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At least 73 records · Page 4

Intercomparison of MODIS Albedo Retrievals and In Situ Measurements Across the Global FLUXNET Network

Surface albedo is a key parameter in the Earth's energy balance since it affects the amount of solar radiation directly absorbed at the planet surface. Its variability in time and space can be globally retrieved through the use of remote sensing products. To evaluate and improve the quality of satellite retrievals, careful intercomparisons with in situ measurements of surface albedo are crucial. For this purpose we compared MODIS albedo retrievals with surface measurements taken at 53 FLUXNET sites that met strict conditions of land cover homogeneity. A good agreement between mean yearly values of satellite retrievals and in situ measurements was found (R(exp 2)= 0.82). The mismatch is correlated to the spatial heterogeneity of surface albedo, stressing the relevance of land cover homogeneity when comparing point to pixel data. When the seasonal patterns of MODIS albedo is considered for different plant functional types, the match with surface observation is extremely good at all forest sites. On the contrary, in non-forest sites satellite retrievals underestimate in situ measurements across the seasonal cycle. The mismatch observed at grasslands and croplands sites is likely due to the extreme fragmentation of these landscapes, as confirmed by geostatistical attributes derived from high resolution scenes.

Cescatti, Alessandro↗

Chromosome-scale Genome Assembly of the Most Abundant Ectomycorrhizal Fungus Cenococcum Geophilum Reveals Massive TE Expansion and RIP Defense Mechanism

Transposable elements (TEs) play crucial roles in genome evolution and ecological adaptation in fungi, yet their dynamics in ectomycorrhizal species remain poorly understood. Cenococcum geophilum, the most widespread ectomycorrhizal fungus in boreal and temperate forests with its large, repeat-rich genome, represents an ideal system to investigate TE-mediated adaptation to the physical environment and symbiotic lifestyle. However, previous studies have been limited by fragmented genome assemblies that prevented the resolution of repeat-rich regions. We assembled a telomere-to-telomere reference genome of C. geophilum strain 1.58 using PacBio HiFi and Hi-C datasets, resulting in a 178.54 Mbp genome with seven contiguous chromosomes. We identified 14,145 genes and over 78% of the genome consists of transposable elements (TEs). Of these, 94% are affected by repeat-induced point mutations (RIP), a genome defense mechanism that acts during the sexual reproduction phase, indicating cryptic or ancient sexual reproduction in this putatively asexual fungus. Long terminal repeat retrotransposons, LINEs, and DNA transposons dominate, with three TE families (Ty3, Ty1, and Tad1) contributing over 60% of the genome size, indicating recent transposition bursts. Screening of 15 additional C. geophilum strains revealed recent and lineage-specific TE expansions, implying that several TEs escaped the RIP machinery and retained potential activity. Supporting TE activity in the context of symbiosis, we found 56 TEs differentially transcribed between ectomycorrhizal and free-living mycelium tissues. An even higher number (n = 66) of TEs were differentially expressed between stress resistance morphology (i.e. sclerotia) and free-living mycelium. This supports that TEs are differentially regulated as a response to symbiotic and stress-related conditions. Our results demonstrate that the C. geophilum genome expansion was driven by a few lineage-specific TE families in recent history, with high RIP activity attesting to sexual reproduction. We also provide insights how TEs could respond to lifestyle transitions and traits associated with desiccation resistance.

Cenococcum geophilum↗

Neutron-Neutron Correlations in the Photofission of 238U

Background: In the fission of actinides, the nearly back-to-back motion of the fission fragments has a strong effect on the kinematics of fission neutrons. This leads to a favoring of opening angles near 0? and 180? in the neutron-neutron (n-n) opening angle distributions of correlated neutron pairs from the same fission event. Purpose: To measure the n-n opening angle and energy correlations in the photofission of 238U. As of this writing, measurements of correlated n-n opening angle distributions have been reported only for the spontaneous and neutron-induced fission of actinides. This work is the first to report such a measurement using photofission and will provide useful experimental input for photofission models used in codes such as MCNP and FREYA. Method: Fission is induced using bremsstrahlung photons produced via a low duty factor, pulsed, linear electron accelerator. The bremsstrahlung photon beam impinges upon a 238U target that is surrounded by a large neutron scintillation detection system capable of measuring particle position and time of flight, from which n-n opening angle and energy are measured. Neutron-neutron angular correlations are determined by taking the ratio between a correlated neutron distribution and an uncorrelated neutron distribution formed by the pairing of neutrons produced during different beam pulses. This analysis technique greatly diminishes effects due to detector efficiencies, acceptance, and experimental drifts. Results: The angular correlation of neutrons from the photofission of 238U shows a high dependence on neutron energy as well as a dependence on the angle of the emitted neutrons with respect to the incoming photon beam. Angular correlations were also measured using neutrons from the spontaneous fission of 252Cf, showing good agreement with past measurements. Conclusions: The measured angular correlations reflect the underlying back-to-back nature of the fission fragments. An anomalous decline in n-n yield was observed for opening angles near 180? for 238U.

Burggraf, Jeff↗

AmeriFlux FLUXNET-1F US-Wi0 Young red pine (YRP)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi0 Young red pine (YRP). This is the FLUXNET version of the carbon flux data for the site US-Wi0 Young red pine (YRP) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Young Red Pine site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. As an assemblage, the ten Wisconsin sites are indicative of the successional stages of development in the predominant stand types of a physically homogeneous landscape. Thinned every 7 years until they reach 100 to 150 years of age, the red pine plantations of all ages occupy approximately 25% of the region.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi1 Intermediate hardwood (IHW)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi1 Intermediate hardwood (IHW). This is the FLUXNET version of the carbon flux data for the site US-Wi1 Intermediate hardwood (IHW) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Intermediate Hardwoods site is located in the Washburn Ranger District of the Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. The intermediate hardwoods site is one of ten sites that collectively represent the successional stages of development in the predominant stand types of a physically homogeneous landscape. In 2001, northern hardwood stands of all ages occupied 45% of the region.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi4 Mature red pine (MRP)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi4 Mature red pine (MRP). This is the FLUXNET version of the carbon flux data for the site US-Wi4 Mature red pine (MRP) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Mature Red Pine site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. As an assemblage, the ten Wisconsin sites are indicative of the successional stages of development in the predominant stand types of a physically homogeneous landscape. Thinned every 7 years until they reach 100 to 150 years of age, the red pine plantations of all ages occupy approximately 25% of the region.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi5 Mixed young jack pine (MYJP)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi5 Mixed young jack pine (MYJP). This is the FLUXNET version of the carbon flux data for the site US-Wi5 Mixed young jack pine (MYJP) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Mixed Young Jack Pine site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. As an assemblage, the ten Wisconsin sites are indicative of the successional stages of development in the predominant stand types of a physically homogeneous landscape. Clearcut on 40 to 70 year intervals, jack pine stands occupy approximately 13% of the region.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi6 Pine barrens #1 (PB1)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi6 Pine barrens #1 (PB1). This is the FLUXNET version of the carbon flux data for the site US-Wi6 Pine barrens #1 (PB1) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Pine Barrens site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. As an assemblage, the ten Wisconsin sites are indicative of the successional stages of development in the predominant stand types of a physically homogeneous landscape. In order to establish and maintain both natural and plantation jack pine stands, pine barrens undergo prescribed burns and harvesting rotations. Pine Barrens occupy 17% of the region in 2001.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi7 Red pine clearcut (RPCC)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi7 Red pine clearcut (RPCC). This is the FLUXNET version of the carbon flux data for the site US-Wi7 Red pine clearcut (RPCC) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Clearcut Red Pine site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. The red pine clearcut site is one of ten sites that collectively represent the successional stages of development in the predominant stand types of a physically homogeneous landscape. Thinned every 7 years until they reach 100 to 150 years of age, the red pine plantations or all ages occupy approximately 25% of the region.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi8 Young hardwood clearcut (YHW)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi8 Young hardwood clearcut (YHW). This is the FLUXNET version of the carbon flux data for the site US-Wi8 Young hardwood clearcut (YHW) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Clearcut Young Hardwood site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. The young hardwood clearcut site is one of ten sites that collectively represent the successional stages of development in the predominant stand types of a physically homogeneous landscape. In 2001, northern hardwood stands of all ages occupied 45% of the region.

Chen, Jiquan↗

AmeriFlux FLUXNET-1F US-Wi9 Young Jack pine (YJP)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Wi9 Young Jack pine (YJP). This is the FLUXNET version of the carbon flux data for the site US-Wi9 Young Jack pine (YJP) produced by applying the standard ONEFlux (1F) software. Site Description - The Wisconsin Young Jack Pine site is located in the Washburn Ranger District of the northeastern section of Chequamegon National Forest. A member of the northern coniferous-deciduous biome, surveys from the mid-19th century indicate the region consisted of a mixed stand of red, white, and jack pines. After extensive timber harvesting, wildfires, and farming activity, the region turned into a fragmented mosaic of stands of various ages and composition. As an assemblage, the ten Wisconsin sites are indicative of the successional stages of development in the predominant stand types of a physically homogeneous landscape. Clearcut on 40 to 70 year intervals, jack pine stands occupy approximately 13% of the region.

Chen, Jiquan↗

A Novel Framework for Multi-Path Data Fusion in Earth Observation and New Observing Strategies: Applications to Predicting Forest Canopy Height

Exponential growth of data from Earth Observation (EO) assets has necessitated the development of sophisticated methods for data interpretation and management. NASA’s New Observing Strategy (NOS) approach aims to coordinate operations among complex heterogenous systems of constellations, requiring advanced Artificial Intelligence and Machine Learning (AI/ML) techniques. Despite significant advancements in AI/ML across various domains, the EO and machine learning for satellite (SatML) fields remain fragmented, often relying on adapted techniques rather than domain-specific solutions. We present a novel end-to-end data fusion framework tailored specifically for EO and SatML, addressing this gap by facilitating rapid development of AI/ML applications. This framework, called, Multimodal Earth Observation Workflow for Machine Learning (MEOW-ML), sup- ports the entire AI/ML lifecycle, from dataset manipulation, to model training, evaluation, and logging, and is designed to expedite the development of next-generation NOS deployments and SOTA in EO. We apply our framework to predict canopy height model (CHM) derived from lidar data. We integrate multiple data modalities through a hierarchical, multi-path model architecture, effectively identifying and leveraging the unique strengths of each data source to enhance predictive accuracy. Our experiments demonstrate that the multi-path architecture outperforms traditional single-path models and provides significant advantages in both accuracy and computational efficiency.

Mark Moussa↗

Optimizing Cryo-Focused Pyrolysis GC/MS for Tracing Soil Organic Matter Across Diverse Ecosystems

The cycling of organic matter in terrestrial soils and sediments is central to a range of biogeochemical processes that regulate nutrient cycling, crop productivity, trace gas emissions, and contaminant transport. Pyrolysis-gas chromatography/mass spectrometry (py-GC/MS) is a powerful tool for characterizing bulk soil organic matter (SOM) at the molecular level. In this study, we used a cryo-focused py-GC/MS system to analyze soil samples from seven diverse ecosystems: vernal pool, prairie pothole, temperate forest, tropical forest, tundra, wildfire-affected boreal forest, and grassland. We addressed a key bottleneck in molecular-level SOM characterization by developing an automated data analysis pipeline to optimize py-GC/MS and complementary evolved gas analysis/mass spectrometry (EGA/MS) methods, incorporating advanced tools for peak deconvolution, developing a custom compound class library, and implementing fragmentation spectrum-based molecular networking for the first time. This improved workflow was applied to soil samples from all seven ecosystems, including multiple depths and density fractions. Our findings demonstrate that ecosystem type plays a dominant role in shaping compositional differences in SOM. We also identified trends in the source of SOM compounds (e.g., microbial vs plantderived) across soil depth and density fractions, which are critical for understanding persistence and turnover of SOM. Our molecular networking analysis indicated that although many compounds are widespread across ecosystems, others are restricted to specific environments, such as wetlands. This underscores the utility of molecular-level data in elucidating the complexity of SOM composition and the environmental drivers that shape it. Such molecular-level insights can deepen our knowledge of biogeochemical SOM cycles.

54 ENVIRONMENTAL SCIENCES↗

SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies

High-throughput genome sequencing technologies enable the investigation of complex genetic interactions, including the horizontal gene transfer of plasmids and bacteriophages. However, identifying these elements from assembled reads remains challenging due to genome sequence plasticity and the difficulty in assembling complete sequences. In this study, we developed a classifier, using random forest, to identify whether sequences originated from bacterial chromosomes, plasmids, or bacteriophages. The classifier was trained on a diverse collection of 23,211 chromosomal, plasmid, and bacteriophage sequences from hundreds of bacterial species. In order to adapt the classifier to incomplete sequences, each complete sequence was subsampled into 5,000 nucleotide fragments and further subdivided into k-mers. This three-class classifier succeeded in identifying chromosomes, plasmids, and bacteriophages using k-mer distributions of complete and partial genome sequences, including simulated metagenomic scaffolds with minimum performance of 0.939 area under the receiver operating characteristic curve (AUC). This classifier, implemented as SourceFinder, has been made available as an online web service to help the community with predicting the chromosomal, plasmid, and bacteriophage sources of assembled bacterial sequence data (https://cge.food.dtu.dk/services/SourceFinder/).

59 BASIC BIOLOGICAL SCIENCES↗

How dry is dead? Evaluating the impact of desiccation on the viability of the invasive species Cissus quadrangularis

Abstract Cissus quadrangularis is a succulent vine that degrades forests where it is not native by growing over trees and causing them to break or by impeding regeneration. Methods for its control have been tried but no satisfactory approach has been found yet. We carried out an experiment to analyze how much desiccation Cissus can endure before losing its ability to grow when rehydrated, using fragments of 0.5, 1, 2, and 3 internodes to test if desiccation tolerance was affected by fragment length. We found that Cissus remains viable after losing up to 80% of its weight, with shorter fragments losing viability (capacity to grow) at 70% weight loss. No fragments sustained viability at 90% water loss, establishing a critical threshold for Cissus desiccation tolerance. Our study also showed that shorter fragments (0.5 internodes) were less viable compared to longer ones (1, 2 or 3 internodes). Cissus has a remarkable tolerance to desiccation. Therefore, management strategies should ensure complete dehydration of Cissus fragments to prevent its regrowth. Reducing fragments to smaller sizes could amplify the effectiveness of control measures by reducing their viability, but risks of increasing propagule numbers should be considered.

Mondragón‐Botero, Ariadna↗

Effects of warming and drying of soils on the ectomycorrhizal community of a mixed Pinus contorta/Picea engelmannii stand in Yellowstone Park

Restriction Fragment Length Polymorphisms (RFLPs) analyses were used to determine patterns of change in ectomycorrhizal community structure response to seasonal warming and drying of soils. Soil cores (42 total, 21 from cold and wet soil in early June, and 21 from dry, warm soil in late August) were collected from replicate blocks in a mixed-conifer forest stand in Yellowstone. Results indicated no significant differences in species richness (2.62 species/core, SE 0.2 in June; 3.25, SE 0.2 in August), however there was a significant effect on ectomycorrhizal infection (P<0.05), mean number of EM tips/core was significantly lower in June (185.8, SE 34) than in August (337 SE 78). Data indicated no difference in overall EM fungal species composition, however among system dominants, two species (Cortinarius 9 and Cortinarius 10) were more abundant in August than in June (P<0.02). The remaining dominant fungal species exhibited no differences in relative abundance. Results are discussed in relation to soil fertility and composition.

Cullings, Kenneth↗

Meteorite Falls Observed in U.S. Weather Radar Data in 2015 and 2016 (To Date)

To date, over twenty meteorite falls have been located in the weather radar imagery of the National Oceanic and Atmospheric Administration (NOAA)'s NEXRAD radar network. We present here the most prominent events recorded since the last Meteoritical Society meeting, covering most of 2015 and early 2016. Meteorite Falls: The following events produced evidence of falling meteorites in radar imagery and resulted in meteorites recovered at the fall site. Creston, CA (24 Oct 2015 0531 UTC): This event generated 218 eyewitness reports submitted to the American Meteor Society (AMS) and is recorded as event #2635 for 2015 on the AMS website. Witnesses reported a bright fireball with fragmentation terminating near the city of Creston, CA, north of Los Angeles. Sonic booms and electrophonic noise were reported in the vicinity of the event. Weather radar imagery records signatures consistent with falling meteorites in data from the KMUX, KVTX, KHNX and KVBX. The Meteoritical Society records the Creston fall as an L6 meteorite with a total recovered mass of 688g. Osceola, FL (24 Jan 2016 1527 UTC): This daytime fireball generated 134 eyewitness reports on AMS report number 266 for 2016, with one credible sonic boom report. The fireball traveled roughly NE to SW with a terminus location north of Lake City, FL in sparsely populated, forested countryside. Radar imagery shows distinct and prominent evidence of a significant meteorite fall with radar signatures seen in data from the KJAX and KVAX radars. Searchers at the fall site found that recoveries were restricted to road sites by the difficult terrain, and yet several meteorites were recovered. Evidence indicates that this was a relatively large meteorite fall where most of the meteorites are unrecoverable due to terrain. Osceola is an L6 meteorite with 991 g total mass recovered to date. Mount Blanco, TX (18 Feb 2016 0343 UTC): This event produced only 39 eyewitness reports and is recorded as AMS event #635 for 2016. No reports of sonic booms or electrophonic noise are recorded in the AMS eyewitness reports, but videos of the event show a relatively long-lasting fireball with fragmentation. Evidence of falling meteorites is seen in radar imagery from the KAMA and KLBB radars defining a roughly WNW to ESE trend with the dominant wind direction. This event featured favorable search ground composed mostly of farmland and ranchland and was extensively searched. Rather surprisingly, only a single L5 chondrite of 36.2g has been recovered to date.

Fries, Marc↗

Zonal-Based Emission Source Term Model for Predicting Particulate Emission Factors in Wildfire Simulations

A physics/chemistry-based numerical model for predicting the emission of fine particles from wildfires is proposed. This model implements the fundamental mechanisms of soot formation in a combustion environment: soot nucleation, surface growth, agglomeration, oxidation, and particle fragmentation. These mechanisms occur on a scale too fine for the discretization of most wildfire models, which need to simulate landscape-scale dynamics. As a result this model implements a zonal approach, where the computed soot particle distribution is partitioned into process zones within a single resolved grid cell. These process zones include: an inception zone (for nucleation), a heating zone (for coagulation, surface growth, and fragmentation), a reaction zone (for oxidation), and a quenched zone (for atmospheric processes). Governing mechanisms are applied to the appropriate zones to predict total particle growth and emission. Additionally, the proposed model is implemented into HIGRAD/FIRETEC, a physics-based wildfire simulation code which couples interactions between fire, fuels, atmosphere, and topography on a landscape scale. Fire simulations among grasslands and conifer forests are performed and compared against experimental data for emission factors.

54 ENVIRONMENTAL SCIENCES↗