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At least 73 records · Page 4

Data for Influence of soil depth, irrigation, and plant genotype on the soil microbiome, metaphenome, and carbon chemistry: Sequence Data

Climate change is causing an increase in drought in many soil ecosystems and a loss of soil organic carbon. Calcareous soils may partially mitigate these losses via carbon capture and storage. Here, we aimed to determine how irrigation-supplied soil moisture and perennial plants impact biotic and abiotic soil properties that underpin deep soil carbon chemistry in an unfertilized calcareous soil. Soil was sampled up to one meter in depth from irrigated and planted field treatments and analyzed using a suite of omics and chemical analyses. Carbon cycling processes in the surface soil were dominated by plant-microbe interactions that drive organic carbon cycling, whereas inorganic carbon chemistry dominated in deeper soil layers. Both irrigation and plant cover impacted organic and inorganic carbon pools in the soil profiles. This study reveals the complex interactions between water, plants, minerals, and microorganisms that govern organic and inorganic pools of soil carbon at different depths.

Naasko, Katherine I↗

Utah FORGE: Well 16A(78)-32 Core Analysis Results

This dataset features petrographic, X-Ray Diffraction (XRD), and Scanning Electron Microscopy Analyses of core samples from well 16A(78)-32, which serves as the injection well for the Utah FORGE Enhanced Geothermal System (EGS) project. In addition to an overview of the analysis, the following items have been included here: images of 21 entire thin sections in plane-polarized and cross-polarized light from 16 depths, scanning electron microscope back scatter electron photomosaic maps of 21 thin sections from 16 depths, bulk XRD data from 16 depths, clay-sized XRD patterns from 16 depths, an optical petrography report, and scanning electron microscopy and energy dispersive spectroscopy analyses of eight selected samples.

15 GEOTHERMAL ENERGY↗

Snow Depth Datasets for Snodgrass Catchment, Colorado, Water Year 2022-2023

This data package presents snow depths data from distributed temperature probes at 18 locations near Snodgrass catchment, Colorado. These data show that snow melt-out dates are approximately one or two weeks later under evergreen forests compared to other vegetation types even at the same elevation. These data were collected to understand how snowmelt heterogeneity impacts headwater hydrology, including streamflow and groundwater levels. They were also used to compare with process-based model simulations of snow depth to evaluate whether the model accurately represents snowmelt dynamics and their effects on headwater hydrology. Snow_DTPs_locations.csv includes all probes locations and their associated elevation and vegetation types. Snow_Depth_Snodgrass_WY2022_2023.csv includes processed snow depths datasets for Water Year (WY) 2022 and 2023. This dataset also includes a file-level metadata (flmd.csv) file that lists each file contained in the dataset with associated metadata and a data dictionary (dd.csv) file that contains column/row headers used throughout the files along with a definition, units, and data type. Several probes have recordings for WY 2021.

54 ENVIRONMENTAL SCIENCES↗

New analysis indicates no thermal inversion in the atmosphere of HD 209458b

An important focus of exoplanet research is the determination of the atmospheric temperature structure of strongly irradiated gas giant planets, or hot Jupiters. HD 209458b is the prototypical exoplanet for atmospheric thermal inversions, but this assertion does not take into account recently obtained data or newer data reduction techniques. We reexamine this claim by investigating all publicly available Spitzer Space Telescope secondary-eclipse photometric data of HD 209458b and performing a self-consistent analysis. We employ data reduction techniques that minimize stellar centroid variations, apply sophisticated models to known Spitzer systematics, and account for time-correlated noise in the data. We derive new secondary-eclipse depths of 0.119% ± 0.007%, 0.123% ± 0.006%, 0.134% ± 0.035%, and 0.215% ± 0.008% in the 3.6, 4.5, 5.8, and 8.0 μm bandpasses, respectively. We feed these results into a Bayesian atmospheric retrieval analysis and determine that it is unnecessary to invoke a thermal inversion to explain our secondary-eclipse depths. The data are well fitted by a temperature model that decreases monotonically between pressure levels of 1 and 0.01 bars. We conclude that there is no evidence for a thermal inversion in the atmosphere of HD 209458b.

79 ASTRONOMY AND ASTROPHYSICS↗

NGEE Arctic Integrated Modeling (IM3): Improved snow-vegetation interaction

This data product represents the integration of new code capability for arctic tundra snow-vegetation-terrain interactions into the Energy Exascale Earth System Model (E3SM), through the E3SM Land Model (ELM) component. This code integration is the result of collaborative effort between the NGEE Arctic project and the E3SM project. The NGEE Arctic project developed a total of six Integrated Modeling (IM) modules informed by observations and experiments. New ELM capability represented by this data product (IM3) falls into three categories: 1) Downscaling from gridcell to topographic unit level when working through the existing coupler bypass code. 2) Four new parameters (taper, stocking, bendresist, and vegshape) have been added to ELM to allow for flexible definition of snow-vegetation interactions. 3) Vegshape and bendresist parameters are used to calculate the fraction of leaf area and/or stem area buried by snow for a given snow depth. This data record consists of a single document (pdf format) that describes the theoretical basis for the snow-vegetation-terrain interactions added to ELM, and describes the modifications made to the ELM code. The Methods section of this metadata record includes a link to the public E3SM code repository where the exact code modifications as integrated in E3SM can be accessed. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

Thornton, Peter E [ORNL] (ORCID:0000000247595158)↗

Using Ensemble Data Assimilation to Estimate Transient Hydrologic Exchange Flow Under Highly Dynamic Flow Conditions

Abstract Quantifying dynamic hydrologic exchange flows (HEFs) within river corridors that experience high‐frequency flow variations caused by dam regulations is important for understanding the biogeochemical processes at the river water and groundwater interfaces. Heat has been widely used as a tracer to infer steady‐state flow velocities through analytical solutions of heat transport defined by the diurnal temperature signals. Under sub‐daily dynamic flow conditions, however, such analytical solutions are not applicable due to the violation of their fundamental assumptions. In this study, we developed a data assimilation‐based approach to estimate the sub‐daily flux under highly dynamic flow conditions using multi‐depth temperature observations at a 5‐min resolution. If the hydraulic gradient is measured, Darcy's law was used to calculate the flux with permeability estimated from temperature responses below the riverbed. Otherwise, flux was estimated directly by assimilating multi‐depth temperature data at 1‐ or 2‐hr time intervals assuming one‐dimensional flow and heat transport governing equation. By comparing estimated fluxes with model‐generated synthetic truth, we demonstrated that both schemes have robust performance in estimating fluxes under highly dynamic flow conditions. This data assimilation‐based flux estimation method was able to capture the vertical sub‐daily fluxes using multi‐depth high‐resolution temperature data alone, even in the presence of multi‐dimensional flow. This approach has been successfully applied to real field temperature data collected at the Hanford site, which experiences highly dynamic HEFs. Our study shows the promise of adopting distributed 1‐D temperature monitoring to capture spatial and temporal exchange dynamics in river corridors at a watershed scale or beyond.

54 ENVIRONMENTAL SCIENCES↗

Elastic depths for detecting shape anomalies in functional data

This this paper, we propose a new family of depth measures called the elastic depths that can be used to greatly improve shape anomaly detection in functional data. Shape anomalies are functions that have considerably different geometric forms or features from the rest of the data. Identifying them is generally more difficult than identifying magnitude anomalies because shape anomalies are often not distinguishable from the bulk of the data with visualization methods. The proposed elastic depths use the recently developed elastic distances to directly measure the centrality of functions in the amplitude and phase spaces. Measuring shape outlyingness in these spaces provides a rigorous quantification of shape which, in turn, gives the elastic depths a strong theoretical and practical advantage over other methods in detecting shape anomalies. A simple boxplot and thresholding method are introduced to identify shape anomalies using the elastic depths. We assess the elastic depth's detection skill on simulated shape outlier scenarios and compare them against popular shape anomaly detectors. Finally, bond yields, image outlines, and hurricane trajectories are used to demonstrate our method's applicability to functional data observed on three different manifolds.

97 MATHEMATICS AND COMPUTING↗

Genome-Scale Metabolic Modeling Enables In-Depth Understanding of Big Data

Genome-scale metabolic models (GEMs) enable the mathematical simulation of the metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a relationship between genotype and phenotype by contextualizing different types of Big Data (e.g., genomics, metabolomics, and transcriptomics). In this review, we analyze the available Big Data useful for metabolic modeling and compile the available GEM reconstruction tools that integrate Big Data. We also discuss recent applications in industry and research that include predicting phenotypes, elucidating metabolic pathways, producing industry-relevant chemicals, identifying drug targets, and generating knowledge to better understand host-associated diseases. In addition to the up-to-date review of GEMs currently available, we assessed a plethora of tools for developing new GEMs that include macromolecular expression and dynamic resolution. Finally, we provide a perspective in emerging areas, such as annotation, data managing, and machine learning, in which GEMs will play a key role in the further utilization of Big Data.

59 BASIC BIOLOGICAL SCIENCES↗

GNSS-based Vegetation Optical Depth, Tree Sway, and Evapotranspiration data from the Niwot Ridge Subalpine Forest (US-NR1) AmeriFlux site

This data package contains data and information about Global Navigation Satellite System (GNSS)-based Vegetation Optical Depth (VOD), tree sway motion, and eddy-covariance evapotranspiration (ET) data collected at the Niwot Ridge Subalpine Forest AmeriFlux site (US-NR1). The raw GNSS data were collected between May 2022 and August 2023. Other processed datasets such as tree sway motion and ET data are also included. The goal was to study the water content within a subalpine forest and, more specifically, examine the canopy evaporation process. This data archive includes all data that were used within the following Biogeosciences discussion paper that further summarizes the research objectives and conclusions:Burns, S.P., V. Humphrey, E.D. Gutmann, M.S. Raleigh, D.R. Bowling, and P.D. Blanken, 2025: Using GNSS-based vegetation optical depth, tree sway motion, and eddy-covariance to examine evaporation of canopy-intercepted rainfall in a subalpine forest. EGUsphere [preprint],https://doi.org/10.5194/egusphere-2025-1755This data archive also supplements the 30-min Lawrence Berkeley National Laboratory (LBNL) AmeriFlux dataset for US-NR1 (i.e., https://doi.org/10.17190/AMF/1246088) and updates what was in the 2020 ESS-DIVE US-NR1 archive (https://doi.org/10.15485/1671825) to include data from the years 2020-2025. More specifically, the following updates are provided: (i) five-minute statistics (means, variances, covariances) of all data measured by the US-NR1 data system between Sep 2020 and Jun 2025 in netCDF format, (ii) the electronic logbook of US-NR1 site visits, (iii) a web calendar (in HTML format) documenting activity at the site (a replica of https://urquell.colorado.edu/calendar/), (iv) photos taken at the site between years 2020 and present day (Aug 2025), and (v) several auxiliary datasets, primary related to trees near the site, soil properties, soil moisture and soil temperature, and subcanopy radiation data. The data package is setup so that the web calendar, photos, and electronic logbook can be easily accessed on a local computer using a web browser. The provided data files are in either BINEX or SBF format (for the raw GNSS data), netCDF, CSV, ASCII, or MATLAB format. To obtain a better understanding about the archive, please start by reading the following PDF which is included within the data archive:README_ESS_DIVE_USNR1_2025_readme_first.pdf.

54 ENVIRONMENTAL SCIENCES↗

East River Watershed Stable Water Isotope Data in Precipitation, Snowpack and Snowmelt 2016-2020

Stable water isotopes (d18O, d2H and d-excess) are important tracers in hydrologic research to understand water partitioning between vegetation, groundwater, and runoff but are rarely applied to large watersheds with persistent snowpack and complex topopgraphy. Data were collected for the Lawrence Berkeley National Laboratory Watershed Function Science Focus Area supported by the U.S Department of Energy in the East River, CO Hydrologic Unit Code (140200010) with limited data also collected in adjacent watersheds Ohio Creek and Taylor River. Data are provided in csv and includes isotopic information for precipitation (years 2014-2016), snowmelt (years 2016-2017) and snowpits (years 2016-2020). Snowpit data contain depth resolved information at 10 cm intervals for density, snow water equivalent (SWE) and stable water isotopes. Bulk isotopic data for 86 snowpits contain depth, SWE, density and SWE-weighted isotope values. Sampling locations and elevations are provided within the data files, while kmz files are provided to view sampling locations using Google Earth software.

54 ENVIRONMENTAL SCIENCES↗

Satellite-Based Daily PM 2.5 Estimates During Fire Seasons in Colorado

The western United States has experienced increasing wildfire activities, which have negative effects on human health. Epidemiological studies on fine particulate matter (PM 2.5 ) from wildfires are limited by the lack of accurate high-resolution PM 2.5 exposure data over fire days. Satellite-based aerosol optical depth (AOD) data can provide additional information in ground PM 2.5 concentrations and has been widely used in previous studies. However, the low background concentration, complex terrain, and large wildfire sources add to the challenge of estimating PM 2.5 concentrations in the western United States. Here, we applied a Bayesian ensemble model that combined information from the 1 km resolution AOD products derived from the Multi-angle Implementation of Atmospheric Correction (MAIAC) algorithm, Community Multiscale Air Quality (CMAQ) model simulations, and ground measurements to predict daily PM 2.5 concentrations over fire seasons (April to September) in Colorado for 2011–2014. Our model had a 10-fold cross-validated R 2 of 0.66 and root-mean-squared error of 2.00 μg/m 3 , outperformed the multistage model, especially on the fire days. Elevated PM 2.5 concentrations over large fire events were successfully captured. The modeling technique demonstrated in this study could support future short-term and long-term epidemiological studies of wildfire PM 2.5 .

54 ENVIRONMENTAL SCIENCES↗

SU-E-J-197: Investigation of Microsoft Kinect 2.0 Depth Resolution for Patient Motion Tracking

Purpose: Investigate the use of the Kinect 2.0 for patient motion tracking during radiotherapy by studying spatial and depth resolution capabilities. Methods: Using code written in C#, depth map data was abstracted from the Kinect to create an initial depth map template indicative of the initial position of an object to be compared to the depth map of the object over time. To test this process, simple setup was created in which two objects were imaged: a 40 cm × 40 cm board covered in non reflective material and a 15 cm × 26 cm textbook with a slightly reflective, glossy cover. Each object, imaged and measured separately, was placed on a movable platform with object to camera distance measured. The object was then moved a specified amount to ascertain whether the Kinect’s depth camera would visualize the difference in position of the object. Results: Initial investigations have shown the Kinect depth resolution is dependent on the object to camera distance. Measurements indicate that movements as small as 1 mm can be visualized for objects as close as 50 cm away. This depth resolution decreases linearly with object to camera distance. At 4 m, the depth resolution had decreased to observe a minimum movement of 1 cm. Conclusion: The improved resolution and advanced hardware of the Kinect 2.0 allows for increase of depth resolution over the Kinect 1.0. Although obvious that the depth resolution should decrease with increasing distance from an object given the decrease in number of pixels representing said object, the depth resolution at large distances indicates its usefulness in a clinical setting.

60 APPLIED LIFE SCIENCES↗

Utah FORGE: Drilling Data for Student Competition

Diagnostic drilling data (Pason log files) from Well 58-32 (previously labeled MU-ESW1), which was drilled near Milford Utah during Phase 2B of the FORGE Project to confirm geothermal reservoir characteristics met requirements for the final FORGE site. This dataset includes both raw, unprocessed drilling data recorded at 1Hz and a processed version downscaled to ~0.3m (1 ft) intervals. Diagnostic drilling data were collected to obtain useful information regarding the nature of the subsurface materials and performance of the drilling rig and drilling bits, including rate of penetration (ROP), weight on bit, temperature, pump pressure, etc.

15 GEOTHERMAL ENERGY↗

SU-E-T-190: First Integration of Steriotactic Radiotherapy Planning System Iplan with Elekta Linear Accelerator

Purpose: For the first time in the world, BrainLAB has integrated its iPlan treatment planning system for clinical use with Elekta linear accelerator (Axesse with a Beam Modulator). The purpose of this study was to compare the calculated and measured doses with different chambers to establish the calculation accuracy of iPlan system. Methods: The iPlan has both Pencil beam (PB) and Monte Carlo (MC) calculation algorithms. Beam data include depth doses, profiles and output measurements for different field sizes. Collected data was verified by vendor and beam modelling was done. Further QA tests were carried out in our clinic. Dose calculation accuracy verified point, volumetric dose measurement using ion chambers of different volumes (0.01cc and 0.125cc). Planner dose verification was done using diode array. Plans were generated in iPlan and irradiated in Elekta Axesse linear accelerator. Results: Dose calculation accuracies verified using ion chamber for 6 and 10 MV beam were 3.5+/-0.33(PB), 1.7%+/-0.7(MC) and 3.9%+/-0.6(PB), 3.4%+/-0.6(MC) respectively. Using a pin point chamber, dose calculation accuracy for 6MV and 10MV was 3.8%+/-0.06(PB), 1.21%+/-0.2(MC) and 4.2%+/-0.6(PB), 3.1%+/-0.7(MC) respectively. The calculated planar dose distribution for 10.4×10.4 cm2 was verified using a diode array and the gamma analysis for 2%-2mm criteria yielded pass rates of 88 %(PB) and 98.8%(MC) respectively. 3mm-3% yields 100% passing for both MC and PB algorithm. Conclusion: Dose calculation accuracy was found to be within acceptable limits for MC for 6MV beam. PB for both beams and MC for 10 MV beam were found to be outside acceptable limits. The output measurements were done twice for conformation. The lower gamma matching was attributed to meager number of measured profiles (only two profiles for PB) and coarse measurement resolution for diagonal profile measurement (5mm). Based on these measurements we concluded that 6 MV MC algorithm is suitable for patient treatment.

07 ISOTOPE AND RADIATION SOURCES↗

Fallon FORGE: Seismic Reflection Profiles

Newly reprocessed Naval Air Station Fallon (1994) seismic lines: pre-stack depth migrations, with interpretations to support the Fallon FORGE (Phase 2B) 3D Geologic model. Data along seven profiles (>100 km of total profile length) through and adjacent to the Fallon site were re-processed. The most up-to-date, industry-tested seismic processing techniques were utilized to improve the signal strength and coherency in the sedimentary, volcanic, and Mesozoic crystalline basement sections, in conjunction with fault diffractions in order to improve the identification and definition of faults within the study area.

15 GEOTHERMAL ENERGY↗

In Situ Soil Moisture and Thaw Depth Measurements Coincident with Airborne SAR Data Collections, Barrow and Seward Peninsulas, Alaska, 2017

The in-situ soil moisture and thaw depth measurements provided in this dataset were collected coincident with airborne overflights of L- and P-band SAR instruments at the NGEE Arctic study site near Barrow, on the North Slope, and at the three study sites on the Seward Peninsula, Alaska. Field measurements and flights were conducted during the summer of 2017 as a collaboration between the NASA ABoVE Project's Airborne SAR Campaign and the NGEE Arctic Project. ABoVE protocols for establishing field measurement plots were followed. NGEE Arctic plots for the ground-based measurements are located at existing study sites where SAR data would also add value to current monitoring and characterization efforts of the NGEE Team. The ground-based data will be used by ABoVE to analyze, calibrate and validate the remote sensing products. In November 2020, a Version 2 (V2) set of in situ soil moisture and thaw depth measurement data files were released. This dataset contains 1 pdf, 2 zip files, and 7 csv files. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy?s Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

Benchmarking CO₂ storage simulations: Results from the 11 th Society of Petroleum Engineers Comparative Solution Project

The 11 th Society of Petroleum Engineers Comparative Solution Project (shortened SPE11 herein) benchmarked simulation tools for geological carbon dioxide (CO 2 ) storage. A total of 45 groups from leading research institutions and industry across the globe signed up to participate, with 18 ultimately contributing valid results that were included in the comparative study reported here. This paper summarizes the SPE11 results. A comprehensive introduction and qualitative discussion of the submitted data are provided, together with an overview of online resources for accessing the full depth of data. A global metric for analyzing the relative distance between submissions is proposed and used to conduct a quantitative analysis of the submissions. This analysis attempts to statistically resolve the key aspects influencing the variability between submissions. The study shows that the major qualitative variation between the submitted results is related to thermal effects, dissolution-driven convective mixing, and resolution of facies discontinuities. Moreover, a strong dependence on grid resolution is observed across all three versions of the SPE11. However, our quantitative analysis suggests that the observed variations are predominantly influenced by factors not documented in the technical responses provided by the participants. We therefore identify that unreported variations due to human choices within the process of setting up, conducting, and reporting on the simulations underlying each SPE11 submission are at least as impactful as the computational choices reported.

Nordbotten, Jan M. [Univ. of Bergen (Norway); Norw↗

Long-Term Daily and Monthly Climate Records from Stations Across the Contiguous United States (U.S. Historical Climatology Network)

The United States Historical Climatology Network (USHCN) is a high-quality data set of daily and monthly records of basic meteorological variables from 1218 observing stations across the 48 contiguous United States. Daily data include observations of maximum and minimum temperature, precipitation amount, snowfall amount, and snow depth; monthly data consist of monthly-averaged maximum, minimum, and mean temperature and total monthly precipitation. Most of these stations are U.S. Cooperative Observing Network stations located generally in rural locations, while some are National Weather Service First-Order stations that are often located in more urbanized environments. The USHCN has been developed over the years at the National Oceanic and Atmospheric Administration's (NOAA) National Climatic Data Center (NCDC) to assist in the detection of regional climate change. Furthermore, it has been widely used in analyzing U.S. climte. The period of record varies for each station. USHCN stations were chosen using a number of criteria including length of record, percent of missing data, number of station moves and other station changes that may affect data homogeneity, and resulting network spatial coverage. Collaboration between NCDC and CDIAC on the USHCN project dates to the 1980s (Quinlan et al. 1987). At that time, in response to the need for an accurate, unbiased, modern historical climate record for the United States, the Global Change Research Program of the U.S. Department of Energy and NCDC chose a network of 1219 stations in the contiguous United States that would become a key baseline data set for monitoring U.S. climate. This initial USHCN data set contained monthly data and was made available free of charge from CDIAC. Since then it has been comprehensively updated several times [e.g., Karl et al. (1990) and Easterling et al. (1996)]. The initial USHCN daily data set was made available through CDIAC via Hughes et al. (1992) and contained a 138-station subset of the USHCN. This product was updated by Easterling et al. (1999) and expanded to include 1062 stations. In 2009 the daily USHCN dataset was expanded to include all 1218 stations in the USHCN.

54 ENVIRONMENTAL SCIENCES↗