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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Batch Effect Correction Methods for NASA GeneLab Transcriptomic Datasets

RNA sequencing (RNA-seq) data from space biology experiments promise to yield invaluable insights into the effects of spaceflight on terrestrial biology. However, sample numbers from each study are low due to limited crew availability, hardware, and space. To increase statistical power, spaceflight RNA-seq datasets from different missions are often aggregated together. However, this can introduce technical variation or "batch effects", often due to differences in sample handling, sample processing, and sequencing platforms. Several computational methods have been developed to correct for technical batch effects, thereby reducing their impact on true biological signals. In this study, we combined 7 mouse liver RNA-seq datasets from NASA GeneLab (part of the NASA Open Science Data Repository) to evaluate several common batch effect correction methods (ComBat and ComBat-seq from the sva R package, and Median Polish, Empirical Bayes, and ANOVA from the MBatch R package). We quantitatively evaluated the ability of these methods to correct for technical batch variables in space biology RNA-seq data using the following criteria: BatchQC, principal component analysis, dispersion separability criterion, log fold change correlation, and differential gene expression analysis. Each batch variable / correction method combination was then assessed using a custom scoring approach to identify the optimal correction method for the combined dataset, by geometrically probing the space of all allowable scoring functions to yield an aggregate volume-based scoring measure. Finally, we describe the way in which the GeneLab multi-study analysis and visualization portal will allow users to examine the presence or absence of batch effects using multiple metrics. If the user chooses to perform batch effect correction, the scoring approach described here can be implemented to identify the optimal correction method to use for their specific combined dataset prior to analysis.

Lauren M. Sanders↗
NASA NTRS2022

Modis TEB Electronic Crosstalk Correction Update and Impact on L1B Product Uncertainty

The MODIS instruments on board the Terra and Aqua satellites have been in operation for over 22 and 20 years, respectively. The instruments’ calibration accuracy has been maintained, even with instrument degradation. Electronic crosstalk in the thermal emissive bands (TEB) is a known issue with an increasing impact on the calibration and product. The Terra MODIS photovoltaic (PV) longwave infrared (LWIR) bands crosstalk corrections have been applied in Collection 6.1 (C6.1). However, the electronic crosstalk contamination for some detectors in the mid-wave infrared(MWIR) bands and the Aqua PVLWIR bands affect the Level-1B(L1B) product’s measurement accuracy and image quality. In Collection 7 (C7), crosstalk corrections for select detectors in the Terra and Aqua MWIR and Aqua PV LWIR bands are applied. The entire mission crosstalk coefficients for the select detectors and bands are derived from scheduled lunar observations and populated in the form of look-up tables (LUTs). The Aqua PV-LWIR bands exhibit similar downward crosstalk trends as the Terra PV-LWIR bands, especially in recent years. The crosstalk coefficients and their trends provide a guideline for the correction application. Earth measurement analyses before and after the correction provide contamination and correction assessments. It has been shown that the product quality is enhanced with the crosstalk correction applied in C7. For C7, the crosstalk coefficient uncertainty is derived from the fit residuals between the measured values and a linear fit over a three-year sliding window. The uncertainty propagation is modeled and applied in the total uncertainty calculation intheL1B product. The TEB electronic cross talk LUT shave been processed over the entire Terra and Aqua MODIS missions. This paper presents the C7 crosstalk correction, as well as its assessment and uncertainty propagation algorithm to the TEB uncertainty.

Tiejun Chang↗
NASA NTRSDate not supplied

Development of In-Flow Phased Microphone Array Windscreen Corrections for Small and Large Arrays

The corrections needed in acoustic level measurements using an in-flow phased-array were documented with detailed measurements in the NASA Ames 25- by 18- by 11-Ft Anechoic Chamber for 4 different in-flow arrays fitted with conformal windscreens of stainless-steel wire cloth and Kevlar120 fabric. This study considered the effects of source measurement angle and distance, and the effects of compact vs large distributed broadband calibration-sources. The study verified a simple geometric scaling that accurately derives the windscreen correction for arbitrary incidence angles from the correction measured at normal incidence. The acoustic corrections for windscreens of stainless-steel wire cloth with 200x600 wires/inch were significantly smaller and more regular than for the Kevlar120 windscreen. The qualitative effects of screen tautness were measured and found to be insignificant for the typical assembly specifications at Ames. Correcting phased array peak levels with the measured windscreen corrections created results that compare well with free-field microphone measurements of broadband noise sources.

windscreens↗
DOE OSTI2026

Radiative corrections to superallowed beta decays at $\mathcal{O}\left({\alpha}^2Z\right)$

We compute $\mathcal{O}\left({\alpha}^2Z\right)$ radiative corrections to superallowed β decays with a heavy-particle effective field theory that systematically describes the interactions of low-energy ultrasoft photons with nuclei. We calculate two-loop virtual and one-loop real-virtual amplitudes by reducing the Feynman integrals to a set of master integrals, which we solve analytically using a variety of techniques. These techniques can be applied to other phenomenologically interesting observables. The ultrasoft corrections can then be combined with contributions arising from the exchange of potential photons to obtain the complete $\mathcal{O}\left({\alpha}^2Z\right)$ correction to the decay rate, with resummation of large logarithms of the electron energy times the nuclear radius. We find that $\mathcal{O}\left({\alpha}^2Z\right)$ ultrasoft loops induce a relative correction to the decay rate that ranges from 0.7 ∙ 10 −3 in the decay of 10 C to 3.6 ∙ 10 −3 in the decay of 54 Co, and will thus impact the extraction of V ud at the permille level. We show that the inclusion of these corrections reduces the residual renormalization scale dependence of the decay rate to a negligible level, making missing ultrasoft perturbative corrections a subdominant source of theoretical uncertainty.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Radiative corrections relating leptoquark-fermion couplings probed at low and high energy

Scalar leptoquarks (LQ) with masses between 2 TeV and 50 TeV are prime candidates to explain deviations between measurements and Standard-Model predictions in decay observables of b-flavored hadrons (“flavor anomalies”). Explanations of low-energy data often involve $\mathcal{O}$ (1) LQ-quark-lepton Yukawa couplings, especially when collider bounds enforce a large LQ mass. This calls for the calculation of radiative corrections involving these couplings. Studying such corrections to LQ-mediated b → cτν and b → sℓ + ℓ − amplitudes, we find that they can be absorbed into finite renormalizations of the LQ Yukawa couplings. If one wants to use Yukawa couplings extracted from low-energy data for the prediction of on-shell LQ decay rates, one must convert the low-energy couplings to their high-energy counterparts, which subsume the corrections to the on-shell LQ-quark-lepton vertex. We present compact formulae for these correction factors and find that in scenarios with S 1 , R 2 , or S 3 LQ the high-energy coupling is always smaller than the low-energy one, which weakens the impact of collider data on the determination of the allowed parameter spaces. For the R 2 scenario addressing b → cτν, in which one of the two involved Yukawa coupling must be significantly larger than 1, we find this coupling reduced by 15% at high energy. If both S 1 and R 2 are present, the high-energy coupling can also be larger and the size of the correction is unbounded, because tree contribution and vertex corrections involve different couplings. We further present the conversion formula to the $\overline{MS}$ scheme for the Yukawa couplings of the S 3 scenario.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

Importance of finite-size corrections for accurate ab initio modeling of carrier capture at semiconductor defects: A case study of substitutional C N in GaN

In ab initio studies of carrier-capture processes in defective semiconductor materials, the single-effective-mode formalism and the static-coupling approximation have become the predominant theoretical approaches for determining carrier-capture coefficients. The single-mode formalism relies on accurate nonequilibrium defect energies obtained from density-functional theory (DFT), where required inputs are a series of configurationally displaced, defect-containing supercells obtained using an interpolative ansatz, and where the DFT outputs are corresponding total energies that have traditionally been postprocessed using a long-established ground-state formulation of finite-size corrections and defect-formation energies. This formulation remains commonly used even though the defects that form a configuration-coordinate (CC) diagram typically exist as structures that are displaced from the ground state. To remedy this inconsistency, Kumagai has recently proposed novel methods for implementing finite-size corrections specifically intended for DFT calculations of the defect energies used to construct CC diagrams and implement the single-mode formalism [Y. Kumagai, Phys. Rev. B 107, L220101 (2023)]. Kumagai's approach builds on the latest finite-size-correction methods introduced to describe vertical charge-state transitions for charge-localizing point defects in semiconductors and insulators [T. Gake et al., Phys. Rev. B 101, 020102 (2020); S. Falletta et al., Phys. Rev. B 102, 041115 (2020)]. The newly identified finite-size artifact treated in these studies is the polarization charge induced on a configurationally frozen defect and its subsequent interaction with a vertical transition in charge state. In this work, we evaluate Kumagai's proposed methodology by applying it in a high-precision DFT study of carrier capture by substitutional C N in GaN, a well-characterized and technologically relevant defect and material. We have rigorously calculated C N defect energies across various supercell sizes for each defect configuration and charge state on the hole-capture CC diagram of C N (𝑞=−1), enabling a direct comparison of the slopes of the defect energies versus inverse cell size with those predicted by Kumagai. The most consequential prediction of Kumagai's method is that these slopes distinctly vary as the square of the linear-interpolation parameter used to construct the nonequilibrium defect configurations. Our results quantitatively support this prediction. Moreover, with these new finite-size corrections and multiple-cell-size DFT calculations in place, we find that the classical energy barrier for hole capture by C N (𝑞=−1) in GaN decreases to 0.092–0.127 eV. This finding confirms the recent ≈ 0.1 eV prediction of Reshchikov based on the weak temperature dependence for hole capture observed in photoluminescence experiments [M. A. Reshchikov, J. Appl. Phys. 129, 121101 (2021)]. These results stand in stark contrast to previously calculated barriers of 0.486 and 0.73 eV, which also used the single-mode formalism but were obtained by instead using ground-state-based finite-size corrections. Our reduced classical barrier for capture increases the temperature-dependent hole-capture coefficient of a C N (𝑞=−1) defect by more than two to four orders of magnitude for temperatures of 100–600 K, compared to the previous 0.486 eV results. While other defects may not be as dramatically affected as here, we suggest that incorporating proper finite-size corrections for the vertical-transition-like states embedded within CC diagrams is an essential, yet previously unrecognized, component of accurate modeling of carrier-capture when using the single-effective-mode formalism.

dielectric properties↗
DOE OSTI2026

Signs of nonmonotonic finite-volume corrections to 𝑔 𝐴

We study finite-volume (FV) corrections to determinations of 𝑔 𝐴 via lattice quantum chromodynamics (QCD) using analytic results and numerical analysis. We observe that 𝑆⁢𝑈⁡(2) heavy Baryon chiral perturbation theory does not provide an unambiguous prediction for the sign of the FV correction, which is not surprising when one also considers large-𝑁 𝑐 constraints on the axial couplings. We further show that nonmonotonic FV corrections are naturally allowed when one considers either including explicit Δ-resonance degrees of freedom or one works to higher orders in the chiral expansion. We investigate the potential impact of these FV corrections with a precision study of 𝑔 𝐴 using models of FV corrections that are monotonic and nonmonotonic. Using lattice QCD data that is approximately at the 1% level of precision, we do not see significant evidence of nonmonotonic corrections. Looking forward to the next phase of lattice QCD calculations, we estimate that calculations that are between the 0.1% and 1% level of precision may be sensitive to these FV artifacts. Finally, we present an update of the CalLat prediction of 𝑔 𝐴 in the isospin limit with subpercent precision, 𝑔$^{QCD}_{𝐴}$ = 1.2674⁢(96).

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2026

Data-Driven Modeling and Correction of Vehicle Dynamics

We develop a data-driven framework for learning and correcting nonautonomous vehicle dynamics. Physics-based vehicle models are often simplified for tractability and therefore exhibit inherent model-form uncertainty, motivating the need for data-driven correction. Moreover, nonautonomous dynamics are governed by time-dependent control inputs, which pose challenges in learning predictive models directly from temporal snapshot data. To address these, we reformulate the vehicle dynamics via a local parameterization of the time-dependent inputs, yielding a modified system composed ofa sequence of local parametric dynamical systems. Here, we approximate these parametric systems using two complementary approaches. First, we employ the dimension reduction and interpolation in parameter space (DRIPS) methodology to construct efficient linear surrogate models, equipped with lifted observable spaces and manifold-based operator interpolation. This enables data-efficient learning of vehicle models whose dynamics admit accurate linear representations in the lifted spaces. Second, for more strongly nonlinear systems, we employ flow map learning (FML), a deep neural network (DNN) approach that approximates the parametric evolution map without requiring special treatment of nonlinearities. We further extend FML with a transfer-learning-based model correction procedure, enabling the correction of misspecified prior models using only a sparse set of high-fidelity or experimental measurements, without assuming a prescribed form for the correction term. Through a suite of numerical experiments on unicycle, simplified bicycle, and slip-based bicycle models, we demonstrate that DRIPS offers robust and highly data-efficient learning of nonautonomous vehicle dynamics, while FML provides expressive nonlinear modeling and effective correction of model-form errors under severe data scarcity.

data-driven modeling↗
NASA NTRS1972

Estimating trajectory correction requirements for multiple outer planet missions.

General approach to the problem of estimating trajectory correction requirements for multiple outer planet flyby missions when the navigation system uses onboard optical measurements made during approach to each target planet to complement the ground-based radio measurements. The accuracy and reliability of the onboard measurement system plays a critical role in sizing the trajectory correction capability required. An illustration of the combined use of radio and optical measurements is provided for the particular case of a Jupiter-Uranus-Neptune mission. Use of the statistical technique developed for computing the trajectory correction margin required to account for uncertainties in subsystem performance, permits trajectory correction savings of 100 to 20 m/sec over 'worst case' designs. This represents weight savings of about 50% of the science payload. For the example case trajectory correction requirements are estimated for two candidate optical systems and the radio alone case. The use of onboard measurements allows a trajectory correction savings of approximately 140 m/sec.

Friedman, L. D.↗
NASA NTRS1977

Development of a drift-correction procedure for a direct-reading spectrometer

A procedure which provides automatic correction for drifts in the radiometric sensitivity of each detector channel in a direct-reading emission spectrometer is described. Such drifts are customarily controlled by the regular analyses of standards, which provide corrections for changes in the excitational, optical, and electronic components of the instrument. This standardization procedure, however, corrects for the optical and electronic drifts. It is a step that must be taken if the time, effort, and cost of processing standards is to be minimized. This method of radiometric drift correction uses a 1,000-W tungsten-halogen reference lamp to illuminate each detector through the same optical path as that traversed during sample analysis. The responses of the detector channels to this reference light are regularly compared with channel response to the same light intensity at the time of analytical calibration in order to determine and correct for drift. Except for placing the lamp in position, the procedure is fully automated and compensates for changes in spectral intensity due to variations in lamp current. A discussion of the implementation of this drift-correction system is included.

Chapman, G. B., II↗
NASA NTRS1985

Determination of corrections to flow direction sensor measurements over an angle-of-attack range from 0 degree to 85 degrees

An investigation was conducted into the nature of corrections for angle-of-attack and angle-of-sideslip measurements obtained with sensors mounted in front of each wingtip of a general aviation airplane. These flow corrections have been obtained from both wind-tunnel and flight tests over an angle-of-attack range from 0 to 85 deg. Both the angle-of-attack and angle-of-sideslip flow corrections were found to be substantial. The corrections were a function of the angle of attack and angle of sideslip and were fairly insensitive to configuration changes and rotational effects. The angle-of-attack flow correction determined from the static wind-tunnel tests agreed reasonably well with the correction determined from flight tests.

Moul, T. M.↗
NASA NTRS1986

Statistical corrections to numerical predictions. IV

The National Meteorological Center Barotropic-Mesh Model has been used to test a statistical correction procedure, designated as M-II, that was developed in Schemm et al. (1981). In the present application, statistical corrections at 12 h resulted in significant reductions of the mean-square errors of both vorticity and the Laplacian of thickness. Predictions to 48 h demonstrated the feasibility of applying corrections at every 12 h in extended forecasts. In addition to these improvements, however, the statistical corrections resulted in a shift of error from smaller to larger-scale motions, improving the smallest scales dramatically but deteriorating the largest scales. This effect is shown to be a consequence of randomization of the residual errors by the regression equations and can be corrected by spatially high-pass filtering the field of corrections before they are applied.

Schemm, Jae-Kyung↗
NASA NTRS1988

Porous wind tunnel corrections for counterrotation propeller testing

Wind tunnel interference corrections have direct impact on measured propeller efficiency. A systematic series of wind tunnel tests was done in the porous-wall NASA Lewis 8- by 6-Foot Wind Tunnel to determine the wind tunnel interference corrections to the NASA Lewis counterrotation propeller test data. The test results were compared with calculations from a potential flow code to determine the interference corrections. At a Mach number of 0.8, the interference corrections resulted in a -0.008 Mach number correction which reduced the counterrotation propeller net efficiency data by 0.46 percent at the reduced Mach number. Additional wind tunnel tests were done to measure the effect of propeller thrust on wind tunnel wall interference. No wall interference corrections due to propeller thrust were found necessary for the high speed counterrotation propeller data obtained in the porous wall NASA Lewis 8- by 6-Foot Wind Tunnel.

Stefko, George L.↗
NASA NTRS1988

Porous wind tunnel corrections for counterrotation propeller testing

Wind tunnel interference corrections have direct impact on measured propeller efficiency. A systematic series of wind tunnel tests was done in the porous-wall NASA Lewis 8- by 6-Foot Wind Tunnel to determine the wind tunnel interference corrections to the NASA Lewis counterrotation propeller test data. The test results were compared with calculations from a potential flow code to determine the interference corrections. At a Mach number of 0.8, the interference corrections resulted in a -0.008 Mach number correction which reduced the counterrotation propeller net efficiency data by 0.46 percent at the reduced Mach number. Additional wind tunnel tests were done to measure the effect of propeller thrust on wind tunnel wall interference. No wall interference corrections due to propeller thrust were found necessary for the high speed counterrotation propeller data obtained in the porous wall NASA Lewis 8- by 6-Foot Wind Tunnel.

Stefko, George L.↗
NASA NTRS1992

Experimental results on a wall interference correction method with interface measurements

A wall interference assessment and correction method for subsonic two-dimensional wind tunnel testing is presented. This method calculates a pressure coefficient and angle of attack correction based on velocity measurements on interfaces inside of the wind tunnel. A mathematical representation of the test article is not required. An experimental verification of the suggested technique is given. A NACA 0012 airfoil is tested at a Mach number of 0.70 and at two different angles of attack. Calculated blockage corrections show reasonable agreement with results based on Hackett's method. Corrected surface pressures compare favorably to free-air flow field data if the tunnel flow field is subsonic. The present wall interference correction method can be applied to transonic tunnel flow fields with some restrictions. Errors are estimated and it is shown that the expected error in calculating the pressure coefficient correction on the model surface is in the order of the error of pressure coefficient measurement on interfaces. Necessary testing equipment in existing tunnels can easily be modified if the present method is applied.

Lo, C. F.↗
NASA NTRS1990

A burst-correcting algorithm for Reed Solomon codes

The Bose, Chaudhuri, and Hocquenghem (BCH) codes form a large class of powerful error-correcting cyclic codes. Among the non-binary BCH codes, the most important subclass is the Reed Solomon (RS) codes. Reed Solomon codes have the ability to correct random and burst errors. It is well known that an (n,k) RS code can correct up to (n-k)/2 random errors. When burst errors are involved, the error correcting ability of the RS code can be increased beyond (n-k)/2. It has previously been show that RS codes can reliably correct burst errors of length greater than (n-k)/2. In this paper, a new decoding algorithm is given which can also correct a burst error of length greater than (n-k)/2.

Chen, J.↗
NASA NTRS1992

Atmospheric corrections for TIMS estimated emittance

The estimated temperature of the average of 500 lines of Thermal Infrared Multispectral Scanner (TIMS) data of the Pacific Ocean, from flight line 94, collected on 30 Sep. 1988, at 1931 GMT is shown. With no atmospheric corrections, estimated temperature decreases away from nadir (the center of the scan line). A LOWTRAN modeled correction, using local radiosonde data and instrument scan angle information, results in reversed limb darkening effects for most bands, and does not adequately correct all bands to the same temperature. The atmosphere tends to re-radiate energy at the wavelengths at which it most absorbs, and thus the overall difference between corrected and uncorrected temperatures is approximately 40 C, despite the average LOWTRAN calculated transmittance of only 60 percent between 8.1 and 11.6 microns. An alternative approach to atmospheric correction is a black body normalization. This is done by calculating a normalization factor for each pixel position and wavelength, which when applied results in a single calculated temperature, as would be expected for a gray body with near uniform emittance. The black body adjustment is based on the atmospheric conditions over the sea. The ground elevation profile along the remaining 3520 scan lines (approximately 10 km) of flight line 94, up the slopes of Kilauea, determined from aircraft pressure and laser altimeter data is shown. This flight line includes a large amount of vegetation that is clearly discernible on the radiance image, being much cooler than the surrounding rocks. For each of the 3520 scan lines, pixels were classified as vegetation or 'other'. A moving average of 51 lines was applied to the composite vegetation emittance for each scan line, to reduce noise. Assuming vegetation to be like water, and to act as gray body with an emittance of 0.986 across the spectrum, it is shown that that the LOWTRAN induced artifacts are severe, and other than for the 0.9.9 micron channel, not significantly different from applying no corrections at all. As expected, with increasing elevation atmospheric effects are slightly reduced, because moisture tends to be concentrated in the lowermost part of the atmosphere. The black body adjustment is highly robust, and even at elevations nearly 600 meters above the sea, remains an alternative procedure for use in calculating emittance.

Warner, T. A.↗
NASA NTRS1994

Evaluation of the TOPEX/POSEIDON dual-frequency ionosphere correction

The NASA altimeter on board TOPEX/POSEIDON exploits the difference in the delays of the Ku and C band radar pulses to estimate an ionosphere correction to the range measurement. The dependence of the ionosphere correction on ocean and satellite parameters is less than 1 cm. The standard deviation of the 1-s averaged ionosphere correction depends on the height of the ocean waves and ranges from 5 to 14 mm. The accuracy of the ionosphere correction is better than 1 cm at the 1 sigma confidence level. The ionosphere correction should be averaged over 140 km (20 s) along track in order to minimize its noise without sacrificing its accuracy. Ionosphere models must achieve an independent sample spacing of 900 km or less in order to allow a single-frequency altimeter to have an ionosphere correction comparable in accuracy to that of the NASA dual-frequency altimeter.

Imel, David A.↗