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At least 73 records · Page 4

Big Data Just Got Bigger

The Trinity supercomputer broke a world record in how quickly they generated a trillion files. A Los Alamos National Laboratory scientist having trouble solving a stubborn research problem needed some help – his scientific simulations had generated a sea of data, but it took so long to search the data that he couldn’t find the information he needed. He found himself looking for the proverbial needle in a haystack. At the same time, the lab’s storage research team had been hard at work on another classic big data problem: creating massive numbers of files as quickly as possible. The day the team met with the scientist, you could say that Big Science and Big Data put their heads together – and now they’re making history.

97 MATHEMATICS AND COMPUTING↗

Introduction to Analysis Methods for Big Earth Data

Big Earth Data are too big to be tractable to simple data inspection and require models to make sense of all the data. Useful models for Big Earth Data may be physical, statistical, or machine learning based. In many cases, hybrid models combine attributes of two or more of these types.

parallel processing (computers)↗

Introduction to Analysis Methods for Big Earth Data

Big Earth Data are too big to be tractable to simple data inspection. Thus, they typically require models to make sense of all the data. Useful models for Big Earth Data may be physical, statistical, or machine learning based. While physical models are ideal for understanding the data, they are not always feasible, particularly when our ability to observe at finer scales exceeds our ability to incorporate the physics. Statistical models are more generalized, but computationally intensive for many Earth Observation datasets. Machine Learning models generally scale well but are sometimes limited in the physical understanding they can offer. Hybrid models combine attributes—and advantages—of two or more of these types.

Christopher Lynnes↗

I/O load balancing for big data HPC applications

High Performance Computing (HPC) big data problems require efficient distributed storage systems. However, at scale, such storage systems often experience load imbalance and resource contention due to two factors: the bursty nature of scientific application I/O; and the complex I/O path that is without centralized arbitration and control. For example, the extant Lustre parallel file system-that supports many HPC centers-comprises numerous components connected via custom network topologies, and serves varying demands of a large number of users and applications. Consequently, some storage servers can be more loaded than others, which creates bottlenecks and reduces overall application I/O performance. Existing solutions typically focus on per application load balancing, and thus are not as effective given their lack of a global view of the system. In this paper, we propose a data-driven approach to load balance the I/O servers at scale, targeted at Lustre deployments. To this end, we design a global mapper on Lustre Metadata Server, which gathers runtime statistics from key storage components on the I/O path, and applies Markov chain modeling and a minimum-cost maximum-flow algorithm to decide where data should be placed. Evaluation using a realistic system simulator and a real setup shows that our approach yields better load balancing, which in turn can improve end-to-end performance.

Paul, Arnab K.↗

Could Blobs Fuel Storage-Based Convergence between HPC and Big Data?

The increasingly growing data sets processed on HPC platforms raise major challenges for the underlying storage layer. A promising alternative to POSIX-IO- compliant file systems are simpler blobs (binary large objects), or object storage systems. Such systems offer lower overhead and better performance at the cost of largely unused features such as file hierarchies or permissions. Similarly, blobs are increasingly considered for replacing distributed file systems for big data analytics or as a base for storage abstractions such as key-value stores or time-series databases. This growing interest in such object storage on HPC and big data platforms raises the question: Are blobs the right level of abstraction to enable storage-based convergence between HPC and Big Data? In this paper we study the impact of blob-based storage for real-world applications on HPC and cloud environments. The results show that blobbased storage convergence is possible, leading to a significant performance improvement on both platforms

Matri, Pierre↗

Big Data Meets HPC Log Analytics: Scalable Approach to Understanding Systems at Extreme Scale

Today's high-performance computing (HPC) systems are heavily instrumented, generating logs containing information about abnormal events, such as critical conditions, faults, errors and failures, system resource utilization, and about the resource usage of user applications. These logs, once fully analyzed and correlated, can produce detailed information about the system health, root causes of failures, and analyze an application's interactions with the system, providing valuable insights to domain scientists and system administrators. However, processing HPC logs requires a deep understanding of hardware and software components at multiple layers of the system stack. Moreover, most log data is unstructured and voluminous, making it more difficult for system users and administrators to manually inspect the data. With rapid increases in the scale and complexity of HPC systems, log data processing is becoming a big data challenge. This paper introduces a HPC log data analytics framework that is based on a distributed NoSQL database technology, which provides scalability and high availability, and the Apache Spark framework for rapid in-memory processing of the log data. The analytics framework enables the extraction of a range of information about the system so that system administrators and end users alike can obtain necessary insights for their specific needs. We describe our experience with using this framework to glean insights from the log data about system behavior from the Titan supercomputer at the Oak Ridge National Laboratory.

Park, Byung↗

Big Data Analytic for Cascading Failure Analysis

With the challenges of increased grid dynamics and more variability of power generation from renewable energy sources, rapidly increasing complexity in the grid model, and abundant data from measurements and simulations, the requirements for computational analysis have also increased dramatically. Power system operators and engineers need to analyze more scenarios, extract meaningful information from a larger set of data, and respond more quickly when faced with these new challenges for large-scale applications, such as contingency analysis. This paper proposes a novel big data analysis approach for power system cascading analysis, prevention, and remediation. The developed techniques will be capable of cascading analysis, better assessment of the system’s vulnerability level, as well as proposing potential remediation. Case studies using IEEE 118-bus system and a 500-bus system, with a comparison against a commercial tool, validate the advantages of the developed big data approach: accurate prediction, and more importantly, faster and effective correction actions.The developed techniques could be further used for other power system applications.

big data, cascading analysis, corrective action, m↗

Big Data Analytics for Long-Term Meteorological Observations at Hanford Site

A growing number of physical objects with embedded sensors with typically high volume and frequently updated data sets has accentuated the need to develop methodologies to extract useful information from big data for supporting decision making. This study applies a suite of data analytics and core principles of data science to characterize near real-time meteorological data with a focus on extreme weather events. To highlight the applicability of this work and make it more accessible from a risk management perspective, a foundation for a software platform with an intuitive Graphical User Interface (GUI) was developed to access and analyze data from a decommissioned nuclear production complex operated by the U.S. Department of Energy (DOE, Richland, USA). Exploratory data analysis (EDA), involving classical non-parametric statistics, and machine learning (ML) techniques, were used to develop statistical summaries and learn characteristic features of key weather patterns and signatures. The new approach and GUI provide key insights into using big data and ML to assist site operation related to safety management strategies for extreme weather events. Specifically, this work offers a practical guide to analyzing long-term meteorological data and highlights the integration of ML and classical statistics to applied risk and decision science.

54 ENVIRONMENTAL SCIENCES↗

Re-Organizing Earth Observation Data Storage to Support Temporal Analysis of Big Data

The Earth Observing System Data and Information System archives many datasets that are critical to understanding long-term variations in Earth science properties. Thus, some of these are large, multi-decadal datasets. Yet the challenge in long time series analysis comes less from the sheer volume than the data organization, which is typically one (or a small number of) time steps per file. The overhead of opening and inventorying complex, API-driven data formats such as Hierarchical Data Format introduces a small latency at each time step, which nonetheless adds up for datasets with O(10^6) single-timestep files. Several approaches to reorganizing the data can mitigate this overhead by an order of magnitude: pre-aggregating data along the time axis (time-chunking); storing the data in a highly distributed file system; or storing data in distributed columnar databases. Storing a second copy of the data incurs extra costs, so some selection criteria must be employed, which would be driven by expected or actual usage by the end user community, balanced against the extra cost.

data storage↗

On the Marriage of Asynchronous Many Task Runtimes and Big Data: A Glance

The rise of the accelerator-based architectures and reconfigurable computing have showcased the weakness of software stack toolchains that still maintain a static view of the hardware instead of relying on a symbiotic relationship between static (e.g., compilers) and dynamic tools (e.g., runtimes). In the past decades, this need has given rise to adaptive runtimes with increasingly finer computational tasks. These finer tasks help to take advantage of the hardware by switching out when a long latency operation is encountered (because of the deeper memory hierarchies and new memory technologies that might target streaming instead of random access), thus trading off idle time for unrelated work. Examples of these finer task runtimes are Asynchronous Many Task (AMT) runtimes, in which highly efficient computational graphs run on a variety of hardware. Due to its inherent latency tolerant characteristics, Latency-sensitive applications, such as Graph Analytics and Big Data can effectively use these runtimes. This paper aims to present an example of how the careful design of an AMT can exploit the hardware substrate when faced with high latency applications such as the ones given in the Big Data domain. Moreover, with its introspection and adaptive capabilities, we aim to show the power of these runtimes when facing the changing requirements of the application workloads. We use the Performance Open Community Runtime (P-OCR) as our vehicle to demonstrate the concepts presented here.

adaptive runtime, big data analysis↗

Roadmap on artificial intelligence and big data techniques for superconductivity

This paper presents a roadmap to the application of AI techniques and big data (BD) for different modelling, design, monitoring, manufacturing and operation purposes of different superconducting applications. To help superconductivity researchers, engineers, and manufacturers understand the viability of using AI and BD techniques as future solutions for challenges in superconductivity, a series of short articles are presented to outline some of the potential applications and solutions. These potential futuristic routes and their materials/technologies are considered for a 10–20 yr time-frame.

machine learning, neural network↗

Big Data in HEP: A comprehensive use case study

Experimental Particle Physics has been at the forefront of analyzing the worlds largest datasets for decades. The HEP community was the first to develop suitable software and computing tools for this task. In recent times, new toolkits and systems collectively called Big Data technologies have emerged to support the analysis of Petabyte and Exabyte datasets in industry. While the principles of data analysis in HEP have not changed (filtering and transforming experiment-specific data formats), these new technologies use different approaches and promise a fresh look at analysis of very large datasets and could potentially reduce the time-to-physics with increased interactivity. In this talk, we present an active LHC Run 2 analysis, searching for dark matter with the CMS detector, as a testbed for Big Data technologies. We directly compare the traditional NTuple-based analysis with an equivalent analysis using Apache Spark on the Hadoop ecosystem and beyond. In both cases, we start the analysis with the official experiment data formats and produce publication physics plots. Lastly, we will discuss advantages and disadvantages of each approach and give an outlook on further studies needed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NUMA-Aware Thread Scheduling for Big Data Transfers over Terabits Network Infrastructure

The evergrowing trend of big data has led scientists to share and transfer the simulation and analytical data across the geodistributed research and computing facilities. However, the existing data transfer frameworks used for data sharing lack the capability to adopt the attributes of the underlying parallel file systems (PFS). LADS (Layout-Aware Data Scheduling) is an end-to-end data transfer tool optimized for terabit network using a layout-aware data scheduling via PFS. However, it does not consider the NUMA (Nonuniform Memory Access) architecture. In this paper, we propose a NUMA-aware thread and resource scheduling for optimized data transfer in terabit network. First, we propose distributed RMA buffers to reduce memory controller contention in CPU sockets and then schedule the threads based on CPU socket and NUMA nodes inside CPU socket to reduce memory access latency. We design and implement the proposed resource and thread scheduling in the existing LADS framework. Experimental results showed from 21.7% to 44% improvement with memory-level optimizations in the LADS framework as compared to the baseline without any optimization.

97 MATHEMATICS AND COMPUTING↗

Big Data, Cloud, and Earth Science

Given the reality of a Big Data future, we need to reevaluate our ability to quickly process immense amounts of data while maintaining our responsibility of stewarding our archives. At National Aeronautics and Space Administration (NASA), our Science Missions Directorate and Earth Science Data Systems have been exploring the commercial cloud as a potential mechanism for data ingest, archive, and distribution since 2015. This talk will discuss our timeline and strategies being employed and will discuss the process of introducing commercial cloud entities into a largely on-premise hardware-reliant approach to ingest, archive, and distribution. We will address topics such as vendor lock-in, varying compute and costing strategies, and end-user adoption. Please join us for an open and authentic conversation about the opportunities we are embracing and the risks we are undertaking as a part of this evolution.

Informatics↗

Taming Big Data Variety in the Earth Observing System Data and Information System

Although the volume of the remote sensing data managed by the Earth Observing System Data and Information System is formidable, an oft-overlooked challenge is the variety of data. The diversity in satellite instruments, science disciplines and user communities drives cost as much or more as the data volume. Several strategies are used to tame this variety: data allocation to distinct centers of expertise; a common metadata repository for discovery, data format standards and conventions; and services that further abstract the variations in data.

Information Systems↗

High-performance End-to-End Integrity Verification on Big Data Transfer

The scale of scientific data generated by experimental facilities and simulations in high-performance computing facilities has been proliferating with the emergence of IoT-based big data. In many cases, this data must be transmitted rapidly and reliably to remote facilities for storage, analysis, or sharing, for the Internet of Things (IoT) applications. Simultaneously, IoT data can be verified using a checksum after the data has been written to the disk at the destination to ensure its integrity. However, this end-to-end integrity verification inevitably creates overheads (extra disk I/O and more computation). Thus, the overall data transfer time increases. In this article, we evaluate strategies to maximize the overlap between data transfer and checksum computation for astronomical observation data. Specifically, we examine file-level and block-level (with various block sizes) pipelining to overlap data transfer and checksum computation. We analyze these pipelining approaches in the context of GridFTP, a widely used protocol for scientific data transfers. Theoretical analysis and experiments are conducted to evaluate our methods. The results show that block-level pipelining is effective in maximizing the overlap mentioned above, and can improve the overall data transfer time with end-to-end integrity verification by up to 70% compared to the sequential execution of transfer and checksum, and by up to 60% compared to file-level pipelining.

data integrity↗

The Bird project: Using Big Data tools to support Search Analytics

The Bird project explored the use of big data analytics tool to improve the findability of information within the Sandia internal network. We were able to perform query classification utilizing the supervised learning algorithms in the Apache Spark library. By relying on the distributed processing capabilities provided by the Apache Hadoop framework, we successfully processed the large query log files needed to train the models in this effort. The capabilities developed in this project are being used to enhance the effectiveness of the enterprise search engine.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗