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At least 73 records · Page 4

Fine Structure in the Secondary Electron Emission Peak for Diamond Crystal with (100) Negative Electron Affinity Surface

A fine structure was discovered in the low-energy peak of the secondary electron emission spectra of the diamond surface with negative electron affinity. We studied this structure for the (100) surface of the natural type-IIb diamond crystal. We have found that the low-energy peak consists of a total of four maxima. The relative energy positions of three of them could be related to the electron energy minima near the bottom of the conduction band. The fourth peak, having the lowest energy, was attributed to the breakup of the bulk exciton at the surface during the process of secondary electron emission.

Asnin, V. M.↗

Affinity of guanosine derivatives for polycytidylate revisited

Evidence is presented for complexation of guanosine 5'-monophosphate 2-methylimidazolide (2-MeImpG) with polycytidylate (poly(C)) at pH 8.0 and 23 degrees C in the presence of 1.0 M NaCl2 and 0.2 M MgCl2 in water. The association of 2-MeImpG with poly(C) was investigated using UV-vis spectroscopy as well as by monitoring the kinetics of the nucleophilic substitution reaction of the imidazole moiety by amines. The results of both methods are consistent with moderately strong poly(C) 2-MeImpG complexation and the spectrophotometric measurements allowed the construction of a binding isotherm with a concentration of 2-MeImpG equal to 5.55 +/- 0.15 mM at half occupancy. UV spectroscopy was employed to establish the binding of other guanosine derivatives on poly(C). These derivatives are guanosine 5'-monophosphate (5'GMP), guanosine 5'-monophosphate imidazolide (ImpG), and guanosine 5'-monophosphate morpholidate (morpG). Within experimental error these guanosine derivatives exhibit the same affinity for poly(C) as 2-MeImpG.

Non-NASA Center↗

Chelators whose affinity for calcium is decreased by illumination

The present invention discloses a group of calcium chelating compounds which have a descreased affinity for calcium following illumination. These new compounds contain a photolabile nitrobenzyl derivative coupled to a tetracarboxylate Ca.sup.2+ chelating parent compound having the octacoordinate chelating groups characteristic of EGTA or BAPTA. In a first form, the new compounds are comprised of a BAPTA-like chelator coupled to a single 2-nitrobenzyl derivative, which in turn is a photochemical precursor of a 2-nitrosobenzophenone. In a second form, the new compounds are comprised of a BAPTA-like chelator coupled to two 2-nitrobenzyl derivatives, themselves photochemical prcursors of the related 2-nitrosobenzophenones. The present invention also discloses a novel method for preparing 1-hydroxy- or 1-alkoxy-1-(2-nitroaryl)-1-aryl methanes. Methanes of this type are critical to the preparation of, or actually constitute, the photolabile Ca.sup.2+ chelating compounds disclosed and claimed herein.

Tsien, Roger Y.↗

Methods for determining the genetic affinity of microorganisms and viruses

Selecting which sub-sequences in a database of nucleic acid such as 16S rRNA are highly characteristic of particular groupings of bacteria, microorganisms, fungi, etc. on a substantially phylogenetic tree. Also applicable to viruses comprising viral genomic RNA or DNA. A catalogue of highly characteristic sequences identified by this method is assembled to establish the genetic identity of an unknown organism. The characteristic sequences are used to design nucleic acid hybridization probes that include the characteristic sequence or its complement, or are derived from one or more characteristic sequences. A plurality of these characteristic sequences is used in hybridization to determine the phylogenetic tree position of the organism(s) in a sample. Those target organisms represented in the original sequence database and sufficient characteristic sequences can identify to the species or subspecies level. Oligonucleotide arrays of many probes are especially preferred. A hybridization signal can comprise fluorescence, chemiluminescence, or isotopic labeling, etc.; or sequences in a sample can be detected by direct means, e.g. mass spectrometry. The method's characteristic sequences can also be used to design specific PCR primers. The method uniquely identifies the phylogenetic affinity of an unknown organism without requiring prior knowledge of what is present in the sample. Even if the organism has not been previously encountered, the method still provides useful information about which phylogenetic tree bifurcation nodes encompass the organism.

Fox, George E.↗

Application of an Affine Nonlinear Galerkin Reduced-order Model to Compressible Fluid Flows

Galerkin reduced-order models (ROMs) often struggle to accurately capture multiscale fluid physics in challenging flow regimes such as flows experiencing compressibility effects. This in part stems from the global nature of both the basis construction problem and the spectral formulation itself. In this work, a multi-basis ROM is developed in an affine space based on proper orthogonal decomposition (POD) by projecting the full Navier-Stokes equations expressed in terms of the specific volume, velocity, and pressure primitive variables. The model is applied to high-fidelity numerical simulation datasets obtained for a canonical compressible flow configuration: the flow over a backward facing step at different subsonic Mach numbers. It is observed that application of an eigenvalue reassignment (ER) stabilization method is required to avoid early divergence of the ROM predictions for this configuration in the three Mach numbers tested. The sensitivity of the POD-ROM results to the choice of parameters in the stabilization algorithm is discussed.

reduced-order model↗

Application of an Affine Nonlinear Galerkin Reduced-order Model to Compressible Fluid Flows

Galerkin reduced-order models (ROMs) often struggle to accurately capture multiscale fluid physics in challenging flow regimes such as flows experiencing compressibility effects. This in part stems from the global nature of both the basis construction problem and the spectral formulation itself. In this work, a multi-basis ROM is developed in an affine space based on proper orthogonal decomposition (POD) by projecting the full Navier-Stokes equations expressed in terms of the specific volume, velocity, and pressure primitive variables. The model is applied to high-fidelity numerical simulation datasets obtained for a canonical compressible flow configuration: the flow over a backward facing step at different subsonic Mach numbers. It is observed that application of an eigenvalue reassignment (ER) stabilization method is required to avoid early divergence of the ROM predictions for this configuration in the three Mach numbers tested. The sensitivity of the POD-ROM results to the choice of parameters in the stabilization algorithm is discussed.

reduced-order model↗

Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites

To mimic a hypothetical pathway for protein evolution, we previously tailored a monomeric protein (cyt cb562) for metal-mediated self-assembly, followed by re-design of the resulting oligomers for enhanced stability and metal-based functions. We show that a single hydrophobic mutation on the cyt cb562 surface drastically alters the outcome of metal-directed oligomerization to yield a new trimeric architecture, (TriCyt1)3. This nascent trimer was redesigned into second and third-generation variants (TriCyt2)3 and (TriCyt3)3 with increased structural stability and preorganization for metal coordination. The three TriCyt variants combined furnish a unique platform to 1) provide tunable coupling between protein quaternary structure and metal coordination, 2) enable the construction of metal/pH-switchable protein oligomerization motifs, and 3) generate a robust metal coordination site that can coordinate all mid-to-late first-row transition-metal ions with high affinity.

Albert Kakkis↗

Geochemical affinities of cobalt and germanium toward metal, silicate, and sulfide phases at high temperature

Hydrothermal studies indicate that Co and Ge are strongly siderophile when metallic iron is in equilibrium with olivine at 900 C and 500 bars. If the metal is replaced by troilite (FeS), Ge is strongly lithophile whereas Co tends to concentrate in the sulfide phase. If iron meteorites were formed in a core derived from the sulfide phase, they would be depleted in Ge but retain Co.

Wai, C. M.↗

Heavy element affinities in Apollo 17 samples

Pb-204, Bi, Tl, and Zn in samples from the Apollo 17 site exhibit relationships not found in samples from other sites. Pb-204, Tl, and Zn in residues remaining after dilute acid leaching are correlated with one another. Orange soil 74220, which is enriched in Pb-204, Tl, and Zn, is included in these relationships. In addition, the submicron metallic phase generally associated with agglutinate formation is correlated with all three of these elements; this relationship has already been reported for Pb-204 in other samples. Thus, orange soil and agglutinates appear to be involved in concentrating heavy volatile metals. A process other than mixing is required to account for this. As a consequence of the isolation of the landing site by the surrounding massifs, local supply and recycling of volatile trace elements in soils may account for some of the interelement relations.

Allen, R. O., Jr.↗

Conditions of origin of natural diamonds of peridotite affinity

Studies of mineral inclusions in natural diamonds and rare diamondiferous xenoliths from kimberlites show that most diamonds are associated with a dunite or harzburgite paragenesis. The diamondiferous periodites and dunites have predominantly coarse or tabular textures that suggest low-temperature (less than 1100 C) equilibration. Application of the K(D) Fe/Mg(Ga/Ol) geothermometer of O'Neill and Wood to analytical data for the minerals in these rocks shows that most have equilibrated below 1100 C. Application of this thermometer to pairs of olivine and garnet crystals included in individual diamonds indicates that the diamonds have crystallized in the range 900-1300 C, with a majority of estimated equilibration temperatures falling in the range below 1150 C. Comparison of these estimates of equilibration temperature with the zone of invariant vapor composition solidus for kimberlite and garnet lherzolite determined by Eggler and Wendlandt (1979) suggests that many diamonds may have formed in subsolidus events.

Boyd, F. R.↗

The fundamental constants of orthotropic affine plate/slab equations

The global constants associated with orthotropic slab/plate equations are discussed, and the rotational behavior of the modulus/compliance components associated with orthotropic slabs/plates are addressed. It is concluded that one cluster constant is less than or equal to unity for all physically possible materials. Rotationally anomalous behavior is found in two materials, and a simple inequality which can be used to identify regular or anomalous behavior is presented and discussed in detail.

Brunelle, E. J.↗