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The James Webb Space Telescope Unfolding the Universe
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Unfolding the Universe With the James Webb Space Telescope: Combining Art, Science, and Technology for Public Outreach
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Expression of unfolded protein response proteins improves plant biomass and growth
Described herein are expression cassettes, plant cells, plant seeds, plants, and methods useful for improving the glucan content and growth of plants.
Unfolding Structure Formation in the Dark Universe via Weak Gravitational Lensing: from Pixels to Cosmology in the Dark Energy Survey and Roman Space Telescope
Weak gravitational lensing (deflection of light from distant galaxies due to the gravitational potential of intervening mass) is one of the most exciting probes in cosmology as it is sensitive both to the growth of the large-scale structure and the expansion history of the Universe. We can measure the coherent distortion of galaxy shapes (which we call cosmic shear) and infer the matter distribution. With next-generation imaging surveys such as the Vera C. Rubin Observatory Legacy Survey of Space and Time (Rubin LSST) and the Nancy G. Roman Space Telescope (Roman), there is immense new promise in understanding the fundamental nature of dark matter and dark energy. With datasets from current experiments like the Dark Energy Survey (DES), we see apparent cosmological tensions between experiments that may either be real and indicate new physics or new systematics we do not yet understand. LSST and Roman will increase the number of galaxies we have observed by an order of magnitude, leading to improved constraints on our cosmological model by up to 300%. These experiments will have the potential to prove if these cosmological tensions are real. However, our control of systematic uncertainties must also improve by similar levels to achieve the promise of what these missions can deliver. To achieve these scientific outcomes, the challenges of determining galaxy shapes and redshifts and modeling the impact of astrophysical effects must be solved. My PhD has focused on enabling weak lensing science in DES and Roman. I co-led the shear analysis teams in DES to produce the largest weak lensing galaxy sample, as well as the final DES cosmological analysis of cosmic shear. For Roman, I have led two papers characterizing and mitigating shear-related systematics with image simulations.
Distinct Secondary Structures of the Leucine-Rich Repeat Proteoglycans Decorin and Biglycan: Glycosylation-Dependent Conformational Stability
Biglycan and decorin, closely related small leucine-rich repeat proteoglycans, have been overexpressed in eukaryotic cers and two major glycoforms isolated under native conditions: a proteoglycan substituted with glycosaminoglycan chains; and a core protein form secreted devoid of glycosaminoglycans. A comparative biophysical study of these glycoforms has revealed that the overall secondary structures of biglycan and decorin are different. Far-UV Circular Dichroism (CD) spectroscopy of decorin and biglycan proteoglycans indicates that, although they are predominantly Beta-sheet, biglycan has a significantly higher content of alpha-helical structure. Decorin proteoglycan and core protein are very similar, whereas the biglycan core protein exhibits closer similarity to the decorin glycoforms than to. the biglycan proteoglycan form. However, enzymatic removal of the chondroitin sulfate chains from biglycan proteoglycan does not induce a shift to the core protein structure, suggesting that the fmal form is influenced by polysaccharide addition only during biosynthesis. Fluorescence emission spectroscopy demonstrated that the single tryptophan residue, which is at a conserved position at the C-terminal domain of both biglycan and decorin, is found in similar microenvironments. This indicates that at least in this specific domain, the different glycoforms do exhibit apparent conservation of structure. Exposure of decorin and biglycan to 10 M urea resulted in an increase in fluorescent intensity, which indicates that the emission from tryptophan in the native state is quenched. Comparison of urea-induced protein unfolding curves provided further evidence that decorin and biglycan assume different structures in solution. Decorin proteoglycan and core protein unfold in a manner similar to a classic two-state model, in which there is a steep transition to an unfolded state between 1-2 M urea. The biglycan core protein also shows a similar steep transition. However, biglycan proteoglycan shows a broad unfolding transition between 1-6 M urea, probably indicating the presence of stable unfolding intermediates.
Introduction, Investigation, and Experimental Validation of a Novel Passive Neutron Spectrometer
Unfolding neutron energy spectra are instrumental for determining personal health effects and calculating dose received. This area of study is heavily researched, and Lawrence Livermore National Laboratory (LLNL) is investigating a passive neutron spectrometer for the purpose of acquiring the information needed to determine personnel dose in the event of a criticality accident. A part of this investigation is presented in this article through the examination of four experimental detector responses (DRs). These four DRs were acquired in the presence of 252 Cf, AmBe, GODIVA, and National Ignition Facility (NIF) neutron sources. An algorithm developed at LLNL was used to unfold the neutron fluence from each of the four DRs, and subsequently, fluence-to-dose conversion factors provided by the American National Standards Institute were used to calculate dose. Additionally, a multistep unfolding process was developed and employed to calculate the effects of both direct (from the source) and indirect (from room return) neutrons. The average error when unfolding the direct DR was less than 8%. The dose from 252 Cf was predicted with only 8% error. The multistep approach allowed for the identification of the low-energy neutrons in the 252 Cf, AmBe, and NIF DRs.
Deuterated Xylene-Based Neutron Spectrometry
Deuterated scintillators, such as deuterated xylene (C8D10) have been theorized to offer better pulse shape discrimination (PSD) and neutron spectrometry performance than traditional protiated scintillators due to the anisotropy of neutron scattering on deuterium. However, the light output responses of said deuterated scintillators to monoenergetic has not been characterized in its entirety at both high and low energies. Several time-of-flight experiments were conducted at the Idaho national Laboratory to characterize a pair of EJ-301D deuterated xylene detectors. The low energy detector response to quasi-monoenergetic neutrons was measured using a Cf-252 source, and the high energy detector response was measured using a D-T source and angles of 20, 45, and 60 deg, corresponding to theoretical neutron energies of 13.2, 10.4, and 8.2 MeV. During post-processing, the neutron and gamma bands were clearly able to be separated, even at low light outputs, solidifying the superior PSD capability of deuterated xylene. An exponential of fit of LO=0.63E-2.22*(1-exp(-0.25E)), which has good agreement with previously measured data, was found as the light output response from deuteron recoils. Additionally, measurements of AmBe, D-T, and D-D sources were unfolded using the light output response curve, which resulted in favorable agreement with theoretical values. Further testing of the response matrix by unfolding more sources (such as PuBe) needs to be done, but the unfolding accuracy for currently available sources suggests that deuterated xylene can be used to measure and unfold both fission, monoenergetic, and continuous spectra.
Early events in G-quadruplex folding captured by time-resolved small-angle X-ray scattering
Abstract Time-resolved small-angle X-ray experiments are reported here that capture and quantify a previously unknown rapid collapse of the unfolded oligonucleotide as an early step in the folding of hybrid 1 and hybrid 2 telomeric G-quadruplex structures. The rapid collapse, initiated by a pH jump, is characterized by an exponential decrease in the radius of gyration from 24.3 to 12.6 Å. The collapse is monophasic and is complete in <600 ms. Additional hand-mixing pH-jump kinetic studies show that slower kinetic steps follow the collapse. The folded and unfolded states at equilibrium were further characterized by SAXS studies and other biophysical tools, showing that G4 unfolding was complete at alkaline pH, but not in LiCl solution as is often claimed. The SAXS Ensemble Optimization Method analysis reveals models of the unfolded state as a dynamic ensemble of flexible oligonucleotide chains with a variety of transient hairpin structures. These results suggest a G4 folding pathway in which a rapid collapse, analogous to molten globule formation seen in proteins, is followed by a confined conformational search within the collapsed particle to form the native contacts ultimately found in the stable folded form.
Meas. K+ -Ar Total Inelastic Cross Section at ProtoDUNE-SP
ProtoDUNE-SP is a single-phase liquid argon time projection chamber that took hadron test beam data in 2018. The test beam included positively charged kaons with test beam momenta of 6 GeV/c and 7 GeV/c, providing a sample to study kaons to benefit future DUNE proton decay and neutrino interaction studies with kaons in the final state. The total inelastic cross section of a positively charged kaon was measured at these test beam settings using the LArIAT thin-slice method of dividing the wires of the time projection chamber into target slices for calculating the cross section, which leverages the monolithic quality of liquid argon detectors. A Bayesian-like unfolding method using RooUnfold was applied to both the incident and interacting slice distributions to measure the cross sections at both test beam momenta. The talk will discuss the method of unfolding, optimization studies for unfolding, and applying systematic uncertainties using a LArIAT-style hadronic cross section using unfolding to extract a kaon total inelastic cross section.
Impact of Source Geometry on Detector Response Matrix Efficiency: Simulations of the PFUNS-MUSiC Experiments
This work looks at two different bare highly enriched uranium (HEU) systems, configuration one from Measurements of Uranium Subcritical and Critical (MUSiC) and Prompt Fission Uranium Neutron Spectrum (PFUNS) to see the effect geometry has on detector efficiency and the response matrix. The distance from the multiplying source, the medium between the source and detector, and the geometry of the source all play a part in the efficiency of the detector. These factors are especially important when performing spectrum unfolding. Spectrum unfolding is a process used to reconstruct a true spectrum from measured detector response data. It involves interpreting a set of measured values, such as a light signal from a scintillator, to recover the original neutron energy spectrum. This leads to the question, how much will the efficiency of a detector change when you measure a point source compared to an extended source? The distance and solid angle from the source to the detector may be different. It may only be a minuscule change, but in the spectrum unfolding process it can have a considerable effect on the unfolded spectrum
Advancements of the nSpec system
For this study, a new characterization of the detector response for the EJ301 liquid scintillator based nSpec system has been conducted at the Los Alamos Neutron Science Center. The new characterization was accomplished in two orders of magnitude less time and with better statistics than the previous characterization. The new and old characterization methods were compared by conducting both types of characterization on two detectors (one EJ301 and one EJ301D). The two methods show consistent results and compare well to results previously published in the literature; however, the results from the characterization of the original nSpec detector show discrepancies that have been identified as being caused by oxygen being absorbed into the detector due to a leak. The new characterized detector response shows improved spectrum unfolding performance than the previous characterization. The cross talk of the detector system was also characterized as a function of incident neutron energy and found to have a negligible impact on spectrum unfolding results. Alternative materials (EJ301D and stilbene) were also characterized in a first step towards an upgraded system. The different materials show little difference in unfolding performance, but the comparison is ongoing. A SiPM based stilbene detector was used to evaluate the use of SiPMs in a future system upgrade. The SiPM provides adequate performance, but the custom SiPM readout results in a much longer pulse width than PMT based systems. The measured light output of the SiPM based stilbene compares well with the results in literature. Future work will look at additional materials (deuterated stilbene and organic glass) and optimizing the SiPM readout to decrease the pulse width.
Structure and Interactions of HIV-1 gp41 CHR-NHR Reverse Hairpin Constructs Reveal Molecular Determinants of Antiviral Activity
Engineered reverse hairpin constructs containing a partial C-heptad repeat (CHR) sequence followed by a short loop and full-length N-heptad repeat (NHR) were previously shown to form trimers in solution and to be nanomolar inhibitors of HIV-1 Env mediated fusion. Their target is the in situ gp41 fusion intermediate, and they have similar potency to other previously reported NHR trimers. However, their design implies that the NHR is partially covered by CHR, which would be expected to limit potency. An exposed hydrophobic pocket in the folded structure may be sufficient to confer the observed potency, or they may exist in a partially unfolded state exposing full length NHR. Here, in this study, we examined their structure by crystallography, CD and fluorescence, establishing that the proteins are folded hairpins both in crystal form and in solution. We examined unfolding in the milieu of the fusion reaction by conducting experiments in the presence of a membrane mimetic solvent and by engineering a disulfide bond into the structure to prevent partial unfolding. We further examined the role of the hydrophobic pocket, using a hairpin-small molecule adduct that occluded the pocket, as confirmed by X-ray footprinting. The results demonstrated that the NHR region nominally covered by CHR in the engineered constructs and the hydrophobic pocket region that is exposed by design were both essential for nanomolar potency and that interaction with membrane is likely to play a role in promoting the required inhibitor structure. The design concepts can be applied to other Class 1 viral fusion proteins.
Development of a compact fast-neutron spectrometer for nuclear emergency response applications
We have developed a Compact Fast Neutron Spectrometer (CFNS) for passive assay of special nuclear material (SNM) through the observation of fast neutrons. The CFNS consists of eight organic glass scintillators (OGS) coupled to silicon photomultipliers and a waveform digitizer, which are integrated within a human-portable box. The CFNS determines the neutron energy profile by spectrum unfolding using the Maximum-Likelihood Expectation Maximization method. The detector acquisition system was optimized to have a dynamic range of up to 10 MeV neutron energy. Bulk special nuclear material (SNM) measurements from the National Criticality Experiments Research Center were analyzed for SNM validation/examination. Additionally, the results show that the CFNS can be used to distinguish between fission and (α, n) neutron emitters, regardless of intervening material type (Cu and polyethylene) and thickness, by taking the ratio of neutron counts at different regions in the unfolded energy spectrum. Additionally, by fitting an exponential curve to the unfolded energy spectrum of PuO 2 and Pu neutron emitters, the CFNS showed the ability of distinguishing between pure Pu oxide, pure Pu metal and mixed oxide-metal configurations.
Designing observables for measurements with deep learning
Many analyses in particle and nuclear physics use simulations to infer fundamental, effective, or phenomenological parameters of the underlying physics models. When the inference is performed with unfolded cross sections, the observables are designed using physics intuition and heuristics. We propose to design targeted observables with machine learning. Unfolded, differential cross sections in a neural network output contain the most information about parameters of interest and can be well-measured by construction. The networks are trained using a custom loss function that rewards outputs that are sensitive to the parameter(s) of interest while simultaneously penalizing outputs that are different between particle-level and detector-level (to minimize detector distortions). We demonstrate this idea in simulation using two physics models for inclusive measurements in deep inelastic scattering. We find that the new approach is more sensitive than classical observables at distinguishing the two models and also has a reduced unfolding uncertainty due to the reduced detector distortions.
Foldable self-erecting joint
The invention relates to a foldable self erecting joint which may be used to deploy the tetratruss frame of the proposed shuttle launched triangular space station. The frame must be folded into the payload bay of the space shuttle orbiter. To deploy the frame the tubes are automatically unfolded and once in position should remain safely. A pair of hinged, tubular members in which the hinging is located at corresponding portions of the members are used. The opposite edge portions are connected by spring-based toggle links which in the unfolded position of the members are nested against one of the members in substantial alignment and over-center for securely locking the joint in the unfolded position.
Two Concepts for Deployable Trusses
Two concepts that could be applied separately or together have been suggested to enhance the utility of deployable truss structures. The concepts were intended originally for application to a truss structure to be folded for compact stowage during transport and subsequently deployed in outer space. The concepts may also be applicable, with some limitations, to deployable truss structures designed to be used on Earth. The first concept involves a combination of features that would help to maximize reliability of a structure while minimizing its overall mass, the complexity of its deployment system, and the expenditure of energy for deployment. The deployment system would be integrated into the truss: some of the truss members would contain folding/unfolding-detent mechanisms similar to those in umbrellas; other truss members would contain shape-memory-alloy (SMA) coil actuators (see Figure 1). Upon exposure to sunlight, the SMA actuators would be heated above their transition temperature, causing them to extend to their deployment lengths. The extension of the actuators would cause the structure to unfold and, upon completion of unfolding, the umbrellalike mechanisms would lock the unfolded truss in the fully deployed configuration. The use of solar heating to drive deployment would eliminate the need to carry a deployment power source. The actuation scheme would offer high reliability in that the truss geometry would be such that deployment could be completed even if all actuators were not functioning. Of course, in designing for operation in normal Earth gravitation, it would be necessary to ensure that the SMA actuators could apply forces large enough to overcome the deploymentresisting forces attributable to the weights of the members. The second concept is that of an improved design for the joints in folding members. Before describing this design,
Folding Elastic Thermal Surface - FETS
The FETS is a light and compact thermal surface (sun shade, IR thermal shield, cover, and/or deployable radiator) that is mounted on a set of offset tape-spring hinges. The thermal surface is constrained during launch and activated in space by a thermomechanical latch such as a wax actuator. An application-specific embodiment of this technology developed for the MATMOS (Mars Atmospheric Trace Molecule Occultation Spectrometer) project serves as a deployable cover and thermal shield for its passive cooler. The FETS fits compactly against the instrument within the constrained launch envelope, and then unfolds into a larger area once in space. In this application, the FETS protects the passive cooler from thermal damage and contamination during ground operations, launch, and during orbit insertion. Once unfolded or deployed, the FETS serves as a heat shield, intercepting parasitic heat loads by blocking the passive cooler s view of the warm spacecraft. The technology significantly enhances the capabilities of instruments requiring either active or passive cooling of optical detectors. This can be particularly important for instruments where performance is limited by the available radiator area. Examples would be IR optical instruments on CubeSATs or those launched as hosted payloads because radiator area is limited and views are often undesirable. As a deployable radiator, the panels making up the FETS are linked thermally by thermal straps and heat pipes; the structural support and deployment energy is provided using tape-spring hinges. The FETS is a novel combination of existing technologies. Prior art for deployable heat shields uses rotating hinges that typically must be lubricated to avoid cold welding or static friction. By using tape-spring hinges, the FETS avoids the need for lubricants by avoiding friction altogether. This also eliminates the potential for contamination of nearby cooled optics by outgassing lubricants. Furthermore, the tape-spring design of the FETS is also self-locking so the panels stay in a rigid and extended configuration after deployment. This unexpected benefit makes the tape-spring hinge design of the FETS a light, simple, reliable, compact, non-outgassing hinge, spring, and latch. While tape-spring hinges are not novel, they have never been used to deploy passive unfolding thermal surfaces (radiator panels, covers, sun shades, or IR thermal shields). Furthermore, because this technology is compact, it has minimal impact on the launch envelope and mass specifications. FETS enhances the performance of hosted payload instruments where the science data is limited by dark noise. Incorporating FETS into a thermal control system increases radiator area, which lowers the optical detector temperature. This results in higher SNR (signal-to-noise ratio) and improved science data.