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At least 73 records · Page 4

3P Program: Phenotyping X Prediction = Productivity (Final Scientific/Technical Report)

The goal of the 3P Program was to establish integrated, real-time phenotyping and to analyze above- and below-ground plant architecture and total carbon partitioning and allocation to predict heterosis and develop superior crop hybrids by fully leveraging the Sorghum gene pool. There were two overarching themes: 1) the development of a new crop improvement approach utilizing advances in high-throughput phenotyping (HTP), computing, and genomics for public dissemination and 2) leveraging this platform for sorghum crop improvement and commercialization. The Clemson team worked on creating genomic resources and using both statistical learning and high-throughput phenotyping in genomics-assisted breeding. Research was broadly interested in the genetics of carbon partitioning, with the aim of improving crop performance and achieving sustainability. The technology and resources created can be readily found in the public domain and serve to advance scientific understanding of crop genomics and breeding. Genomic prediction was able to identify top crosses to be made, and a hybrid prediction pipeline is in place to drive year-over-year genetic gain. Roots have long been ignored by plant breeders and agronomists, not because they are unimportant but because they are hard to measure. This is an untapped white space of potential insight and innovation. To address this, Hi Fidelity Genetics developed the RootTracker to measure roots in the field on a continuous basis. A database system called RootTracker Tracker was developed to handle data coming from the RootTrackers. In using this device, valuable data was observed for plant breeding, hydrochemical development, and other agricultural biology applications. Carnegie Mellon’s goal was developing new techniques to generate high-resolution 3D models of plants from data collected in the field. The idea was that more useful and more informative phenotypes could be extracted by resolving small features, such as seeds and flowers, and that by modeling in 3D, the spatial structure of plants could be examined. To achieve this, multiple images collected by a new small format structured light stereo imager were fused together. A sorghum panicle modeling pipeline was developed to allow the collection and processing of data. Carolina Seed Systems is an agricultural technology company focused on decarbonizing the agricultural system. Their technology pipeline serves to drive fundamental progress towards creation and distribution of carbon negative crops. The genomic and the engineering technology developed through the 3P Program was leveraged to deliver both value and sustainability from the grower to the consumer. Promising sorghum hybrids were scaled up and commercialized. The overall goal of our research was to integrate, create, and deploy genetic and engineering concepts and technologies to enhance crop productivity in a sustainable fashion. The combination of public and private partners allowed the basic research and hypothesis testing to be quickly accelerated for commercial application by the companies yet maintained that the core framework and academic insights remain in the public domain for continued market disruption, competition, and innovation.

59 BASIC BIOLOGICAL SCIENCES↗

Missing data in multi-omics integration: Recent advances through artificial intelligence

Biological systems function through complex interactions between various ‘omics (biomolecules), and a more complete understanding of these systems is only possible through an integrated, multi-omic perspective. This has presented the need for the development of integration approaches that are able to capture the complex, often non-linear, interactions that define these biological systems and are adapted to the challenges of combining the heterogenous data across ‘omic views. A principal challenge to multi-omic integration is missing data because all biomolecules are not measured in all samples. Due to either cost, instrument sensitivity, or other experimental factors, data for a biological sample may be missing for one or more ‘omic techologies. Recent methodological developments in artificial intelligence and statistical learning have greatly facilitated the analyses of multi-omics data, however many of these techniques assume access to completely observed data. A subset of these methods incorporate mechanisms for handling partially observed samples, and these methods are the focus of this review. We describe recently developed approaches, noting their primary use cases and highlighting each method's approach to handling missing data. We additionally provide an overview of the more traditional missing data workflows and their limitations; and we discuss potential avenues for further developments as well as how the missing data issue and its current solutions may generalize beyond the multi-omics context.

97 MATHEMATICS AND COMPUTING↗

Race-Specific Risk Factors for Homeownership Disparity in the Continental United States

The United States has a racial homeownership gap due to a legacy of historic inequality and discriminatory policies, but factors that contribute to the racial disparity in homeownership rates between White Americans and people of color have not been fully characterized. In order to alleviate this issue, policymakers need a better understanding of how risk factors affect the homeownership rates of racial and ethnic groups differently. In this study, data from several publicly available surveys, including the American Community Survey and United States Census, were leveraged in combination with statistical learning models to investigate potential factors related to homeownership rates across racial and ethnic categories, with a focus on how risk factors vary by race or ethnicity. Our models indicated that job availability for specific demographics, and specific regions of the United States were factors that affect homeownership rates in Black, Hispanic, and Asian populations in different ways. Based on the results of this study, it is recommended policymakers promote strategies to increase access to jobs for people of color (POC), such as vocational training and programs to reduce implicit bias in hiring practices. These interventions could ultimately increase homeownership rates for POC and be a step toward reducing the racial wealth gap.

99 GENERAL AND MISCELLANEOUS↗

Hybrid NN/SVM Computational System for Optimizing Designs

A computational method and system based on a hybrid of an artificial neural network (NN) and a support vector machine (SVM) (see figure) has been conceived as a means of maximizing or minimizing an objective function, optionally subject to one or more constraints. Such maximization or minimization could be performed, for example, to optimize solve a data-regression or data-classification problem or to optimize a design associated with a response function. A response function can be considered as a subset of a response surface, which is a surface in a vector space of design and performance parameters. A typical example of a design problem that the method and system can be used to solve is that of an airfoil, for which a response function could be the spatial distribution of pressure over the airfoil. In this example, the response surface would describe the pressure distribution as a function of the operating conditions and the geometric parameters of the airfoil. The use of NNs to analyze physical objects in order to optimize their responses under specified physical conditions is well known. NN analysis is suitable for multidimensional interpolation of data that lack structure and enables the representation and optimization of a succession of numerical solutions of increasing complexity or increasing fidelity to the real world. NN analysis is especially useful in helping to satisfy multiple design objectives. Feedforward NNs can be used to make estimates based on nonlinear mathematical models. One difficulty associated with use of a feedforward NN arises from the need for nonlinear optimization to determine connection weights among input, intermediate, and output variables. It can be very expensive to train an NN in cases in which it is necessary to model large amounts of information. Less widely known (in comparison with NNs) are support vector machines (SVMs), which were originally applied in statistical learning theory. In terms that are necessarily oversimplified to fit the scope of this article, an SVM can be characterized as an algorithm that (1) effects a nonlinear mapping of input vectors into a higher-dimensional feature space and (2) involves a dual formulation of governing equations and constraints. One advantageous feature of the SVM approach is that an objective function (which one seeks to minimize to obtain coefficients that define an SVM mathematical model) is convex, so that unlike in the cases of many NN models, any local minimum of an SVM model is also a global minimum.

Rai, Man Mohan↗

Prognostics

Knowledge discovery, statistical learning, and more specifically an understanding of the system evolution in time when it undergoes undesirable fault conditions, are critical for an adequate implementation of successful prognostic systems. Prognosis may be understood as the generation of long-term predictions describing the evolution in time of a particular signal of interest or fault indicator, with the purpose of estimating the remaining useful life (RUL) of a failing component/subsystem. Predictions are made using a thorough understanding of the underlying processes and factor in the anticipated future usage.

Systems Health Management↗

K-Means Cluster Study for Radiofrequency Propagation Characterization

The objective of this study is to design a simple method for mining radio frequency (RF) propagation data. The study explored the characteristics of a large dataset of propagation experiments conducted over the span of years and using several ground stations around the world. Furthermore, this study developed simple predictive models that can be used for link characterization and overall propagation behavior description, without the need for physical measurements on-site. It is understood that such statistical learning has several drawbacks in terms of accuracy and precision. K-means clustering was used to characterize the data set in a way never explored before in an attempt to create useful tools that reduce cost, time and risk. K-means clustering was used to characterize the data set. Cosine distance was used as a method to determine the optimal number for clustering each feature. Dependence and independence analysis was performed to explore intra and inter-sensitivity between the presented features, with respect to each other and time. Several predicative models were generated and evaluated with respect to a test set to assess a measure of prediction accuracy and precision. A simple method for data analysis was developed and tested as the basis for further studies and future refinement to produce optimal performing models.

Cognitive↗

Reducing V&V Cost of Flight Critical Systems: Myth or Reality?

This paper presents an overview of NASA research program on the V&V of flight critical systems. Five years ago, NASA started an effort to reduce the cost and possibly increase the effectiveness of V&V for flight critical systems. It is the right time to take a look back and realize what progress has been made. This paper describes our overall approach and the tools introduced to address different phases of the software lifecycle. For example, we have improved testing by developing a statistical learning approach tor defining test cases. The tool automatically identifies possible unsafe conditions by analyzing outliers in output data; using an iterative learning process, it can then generate more test cases that represent potentially unsafe regions of operation. At the code level, we have developed and made available as open source a static analyzer for C and C++ programs called IKOS. We have shown that IKOS is very precise in the analysis of embedded C programs (very few false positives) and a bit less for regular C and C++ code. At the design level, in collaboration with our NRA partners, we have developed a suite of analysis tools for Simulink models. The analysis is done in a compositional framework for scalability.

Brat, Guillaume P.↗

Autonomous Contingency Management In Urban Air Mobility: The Communication Network Awareness Machine System

Next Generation Air Transportation System (NextGen) has begun the modernization of the nation’s air transportation system (NAS), with goals to improve system safety, increase operation efficiency and capacity, provide enhanced predictability, resilience and robustness [1]. The overall objective of the Air Traffic Management-eXploration (ATM-X) project is to facilitate the goals of NextGen by conducting research to enable the growing demand of new, mission variant, air vehicles with safe access to the NAS. The implementation and utilization of new and burgeoning technologies that are both flexible, scalable, and systematically user-focused are requisite for ATM-X to achieve its intention of NAS safe entry [2]. Researchers from NASA Langley’s Flight Deck Integration Team have developed a system architecture that would allow ATM-X to leverage the necessary capabilities of an Increasingly Autonomous System (IAS), machine-agent that will promote the safe access and operation of air vehicles within what has become the byproduct of NextGen modernization, a Net-Centric airspace architecture and an Urban Air Mobility (UAM) community. Conducting flight operations within this type of architecture constrains the human-agent’s natural ability by data management. When the massive volume of data, its types, and the acquisition speed at which the data is ingested is observed it becomes evident that the human-agent will be functioning at an operational disadvantage. Therefore, the development and integration of intelligent machine-agents into the flight deck are a necessary implementation to achieve ATM-X overall objective of safe access and operation in the NAS.

Urban Air Mobility↗

Communication Network Awareness Machine System Phase I Development: The Intelligent Party-Line Schema

As NextGen continues toward the full implementation of a Net-Centric Architecture (N-CA)it will inherently provide a continuous increase to the Three-Vs components (Volume, Velocity, and Variety) of big data . This will create an insurmountable environment for direct-action aviation personnel (DAAP)as the DAAP’s natural abilities to manage and process data into actionable information will be overmatched by the Three-Vs. Therefore, conducting operations within a N-CA requires that new tools and applications be researched and developed to aid the DAAP’s ability to understand and manage data, mitigate non-normals, create contingency plans and actions. This paper will describe a research area at NASA Langley Research Center known as the Intelligent Party-Line (IPL).

Intelligent Party-Line↗

Planning Bias: Planning as a Source of Sampling Bias

Many data-driven planning methods are trained on data generated by planners. It is well known that many statistical learning methods are sensitive to sampling bias, and yet there has been little or no attention to planning as a sampling method and its role in introducing sampling bias into planner-generated training data. Recently, it has been demonstrated that A**,* in the presence of problems with variable heuristic error, prefers some solutions over other equally cost-optimal solutions. But, as we discuss in this paper, mitigation may not be as simple as resolving arbitrary tie-breaking by sampling from ties uniformly at random. In this paper, we formalize an intuition of planning bias. We focus on problems which output a single solution. Diverse planning only complicates the problem by generalizing it to bias in the set of sets; we show how it is subject to bias in the single solution. We make some useful observations about deterministic algorithms in contrast to non-deterministic algorithms. We explain how information entropy may be a good way to measure planning bias, and discuss some issues in evaluating practical approaches to measurement. We address the intuition that uniform random tiebreaking should mitigate bias; and sketch a novel approach to constructing an appropriate random distribution for duplicate detection during forward search for unbiased A*. Finally, we suggest directions for future work.

Planning Scheduling Algorithms↗

Exploring for Superhot Geothermal Targets in Magmatic Settings: Developing a Methodology

This paper presents preliminary results from a subset of work carried out as part of a multinational research project entitled DErisking Exploration for multiple geothermal Plays in magmatic ENvironments (DEEPEN). One objective of DEEPEN is to develop a customized approach to exploration for superhot geothermal plays in magmatic systems. This paper summarizes key geologic components, risk factors, and exploration methods for geothermal plays in magmatic settings based on a review and comparative analysis of international training sites. As part of a Play Fairway Analysis (PFA) approach to exploring for multiple play types in a single magmatic system, training data were compiled and weights assigned to various evidence layers. Two different approaches for weighting exploration datasets are described in this paper - one based on expert opinions and the other using statistical learning. Weights produced by both approaches will be input into a 3D PFA workflow that combines multiple exploration datasets to generate 3D geothermal favorability models, which will be applied to two international demonstration sites.

GEOTHERMAL ENERGY↗

AI and ML Applications for PV Reliability and System Performance

This poster discusses AI and ML topics in PV reliability and system performance. In particular, automated metadata extraction and QA for fielded solar installations is covered for the PV Fleets Project. Additionally, statistical learning topics for the PVInsight Project are addressed, as well as development of the PV Validation Hub.

algorithm↗

1st Computational Physics School for Fusion Research (2019 CPS-FR)

The rising number of applications of machine learning and computational statistics in fusion energy research requires flexibility in adopting a growing variety of tools. The Computational Physics School for Fusion Research (CPS-FR) aims at providing young researchers with critical skill sets to deal with modern fusion energy research challenges. The School aims at covering essentials of: Computational Statistics, Machine Learning, Deep Learning and optimization methods, Parallel Programming and HPC. As the first edition of the CPS-FR just concluded, this report highlights its main results and summarizes its contents.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Statistical Complexity of Quantum Learning

Abstract Learning problems involve settings in which an algorithm has to make decisions based on data, and possibly side information such as expert knowledge. This study has two main goals. First, it reviews and generalizes different results on the data and model complexity of quantum learning, where the data and/or the algorithm can be quantum, focusing on information‐theoretic techniques. Second, it introduces the notion of copy complexity, which quantifies the number of copies of a quantum state required to achieve a target accuracy level. Copy complexity arises from the destructive nature of quantum measurements, which irreversibly alter the state to be processed, limiting the information that can be extracted about quantum data. As a result, empirical risk minimization is generally inapplicable. The paper presents novel results on the copy complexity for both training and testing. To make the paper self‐contained and approachable by different research communities, an extensive background material is provided on classical results from statistical learning theory, as well as on the distinguishability of quantum states. Throughout, the differences between quantum and classical learning are highlighted by addressing both supervised and unsupervised learning, and extensive pointers are provided to the literature.

97 MATHEMATICS AND COMPUTING↗

Statistically-informed deep learning for gravitational wave parameter estimation

We introduce deep learning models to estimate the masses of the binary components of black hole mergers, $(m_1,m_2)$, and three astrophysical properties of the post-merger compact remnant, namely, the final spin, $a_\mathrm f$, and the frequency and damping time of the ringdown oscillations of the fundamental $\ell = m = 2$ bar mode, $(\omega_\mathrm R, \omega_\mathrm I)$. Our neural networks combine a modified WaveNet architecture with contrastive learning and normalizing flow. We validate these models against a Gaussian conjugate prior family whose posterior distribution is described by a closed analytical expression. Upon confirming that our models produce statistically consistent results, we used them to estimate the astrophysical parameters $(m_1,m_2, a_\mathrm f, \omega_\mathrm R, \omega_\mathrm I)$ of five binary black holes: GW150914, GW170104, GW170814, GW190521 and GW190630. We use PyCBC Inference to directly compare traditional Bayesian methodologies for parameter estimation with our deep learning based posterior distributions. Our results show that our neural network models predict posterior distributions that encode physical correlations, and that our data-driven median results and 90% confidence intervals are similar to those produced with gravitational wave Bayesian analyses. This methodology requires a single V100 NVIDIA GPU to produce median values and posterior distributions within two milliseconds for each event. Furthermore, this neural network, and a tutorial for its use, are available at the Data and Learning Hub for Science.

79 ASTRONOMY AND ASTROPHYSICS↗

Systematic quark/gluon identification with ratios of likelihoods

Discriminating between quark- and gluon-initiated jets has long been a central focus of jet substructure, leading to the introduction of numerous observables and calculations to high perturbative accuracy. At the same time, there have been many attempts to fully exploit the jet radiation pattern using tools from statistics and machine learning. We propose a new approach that combines a deep analytic understanding of jet substructure with the optimality promised by machine learning and statistics. After specifying an approximation to the full emission phase space, we show how to construct the optimal observable for a given classification task. This procedure is demonstrated for the case of quark and gluons jets, where we show how to systematically capture sub-eikonal corrections in the splitting functions, and prove that linear combinations of weighted multiplicity is the optimal observable. In addition to providing a new and powerful framework for systematically improving jet substructure observables, we demonstrate the performance of several quark versus gluon jet tagging observables in parton-level Monte Carlo simulations, and find that they perform at or near the level of a deep neural network classifier. Combined with the rapid recent progress in the development of higher order parton showers, we believe that our approach provides a basis for systematically exploiting subleading effects in jet substructure analyses at the Large Hadron Collider (LHC) and beyond.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗