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DOE OSTI2026

Electron Neutrino Selection for Neutrino Oscillation Searches in the SBN Program

The Short- Baseline Neutrino (SBN) Pprogram at Fermilab employs a near detector, SBND, and a far detector, ICARUS, to search for baseline-dependent changes to the measure muon neutrino disappearance and electron neutrino appearance and disappearance from the muon neutrino-dominated Booster Neutrino Beam flux. The use of the same liquid argon time projection chamber (LArTPC) technology in both detectors and the same neutrino beam enables a systematically well-constrained oscillation measurement, by leveraging the high statistics of O(10 million) neutrino interactions expected at SBND through 2027 to constrain flux and cross-section systematics. In this poster, we present high-statistics, high-purity electron neutrino selections in SBND and ICARUS and related electron shower energy calibration measurements in SBND enabled by the SPINE deep learning-based particle reconstruction framework. Furthermore, we discuss how these samples can enable high sensitivity to '3+1' sterile neutrino oscillations in a combined fit accounting for systematic uncertainties and correlations.

Oza, Nupur [Nevis Labs, Columbia U.; Columbia U.]↗

DOE OSTI2022

A novel approach for tetrahedral-element-based finite element simulations of anisotropic hyperelastic intervertebral disc behavior

Intervertebral discs are microstructurally complex spinal tissues that add greatly to the flexibility and mechanical strength of the human spine. Attempting to provide an adjustable basis for capturing a wide range of mechanical characteristics and to better address known challenges of numerical modeling of the disc, we present a robust finite-element-based model formulation for spinal segments in a hyperelastic framework using tetrahedral elements. We evaluate the model stability and accuracy using numerical simulations, with particular attention to the degenerated intervertebral discs and their likely skewed and narrowed geometry. To this end, 1) annulus fibrosus is modeled as a fiber-reinforced Mooney-Rivlin type solid for numerical analysis. 2) An adaptive state-variable dependent explicit time step is proposed and utilized here as a computationally efficient alternative to theoretical estimates. 3) Tetrahedral-element-based FE models for spinal segments under various loading conditions are evaluated for their use in robust numerical simulations. For flexion, extension, lateral bending, and axial rotation load cases, numerical simulations reveal that a suitable framework based on tetrahedral elements can provide greater stability and flexibility concerning geometrical meshing over commonly employed hexahedral-element-based ones for representation and study of spinal segments in various stages of degeneration.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2023

Coccidioidomycosis Osteoarticular Dissemination

Valley fever or coccidioidomycosis is a pulmonary infection caused by species of Coccidioides fungi that are endemic to California and Arizona. Skeletal coccidioidomycosis accounts for about half of disseminated infections, with the vertebral spine being the preferred site of dissemination. Most cases of skeletal coccidioidomycosis progress to bone destruction or spread to adjacent structures such as joints, tendons, and other soft tissues, causing significant pain and restricting mobility. Manifestations of such cases are usually nonspecific, making diagnosis very challenging, especially in non-endemic areas. The lack of basic knowledge and research data on the mechanisms defining susceptibility to extrapulmonary infection, especially when it involves bones and joints, prompted us to survey available clinical and animal data to establish specific research questions that remain to be investigated. In this review, we explore published literature reviews, case reports, and case series on the dissemination of coccidioidomycosis to bones and/or joints. We highlight key differential features with other conditions and opportunities for mechanistic and basic research studies that can help develop novel diagnostic, prognostic, and treatment strategies.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2024

Filaments of the Slime Mold Cosmic Web and How They Affect Galaxy Evolution

Abstract We present a novel approach for identifying cosmic web filaments within theDisPerSEstructure identification framework, using cosmic density field estimates from the Monte Carlo Physarum Machine (MCPM), inspired by the slime mold organism. We apply our method to the IllustrisTNG (TNG100) cosmological simulations and investigate the impact of filaments on galaxies. The MCPM density field is superior to the Delaunay tessellation field estimator in tracing the true underlying matter distribution and allows filaments to be identified with higher fidelity, finding more low-prominence/diffuse filaments. Using our new filament catalogs, we find that ≳90% of galaxies are located within ∼1.5 Mpc of a filamentary spine, with little change in the median star formation activity with distance to the nearest filament. Instead, we uncover a differential effect of the local filament line density, Σ fil (MCPM)—the total MCPM overdensity per unit length along a filament segment—on galaxy formation: most galaxies are quenched and gas-poor near high-line density filaments atz≤ 1. At earlier times, the filamentary environment appears to have no effect on galactic gas supply and quenching. Atz= 0, quenching in log ( M * / M ⊙ ) ≳ 10.5 galaxies is mainly driven by mass, while lower-mass galaxies are significantly affected by the filament line density. Satellites are far more susceptible to filaments than centrals. The local environments of massive halos are not sufficient to account for the effect of filament line density on gas removal and quenching. Our new approach holds great promise for observationally identifying filaments from galaxy surveys such as SDSS and DESI.

Astronomy & Astrophysics↗

DOE OSTI2025

Ion-rich Acceleration during an Eruptive Flux Rope Event in a Multiple Null-point Configuration

We report on the γ-ray emission above 100 MeV from the GOES M3.3 flare SOL2012-06-03. The hard X-ray (HXR) and microwave emissions have typical time profiles with a fast rise to a well-defined peak followed by a slower decay. The >100 MeV emission during the prompt phase displayed a double-peaked temporal structure with the first peak following the HXR and microwaves, and the second one, about 3 times stronger, occurring 17 ± 2 s later. The time profiles seem to indicate two separate acceleration mechanisms at work, where the second γ-ray peak reveals a potentially pure or at least largely dominant ion acceleration. The Atmospheric Imaging Assembly imaging shows a bright elliptical ribbon and a transient brightening in the northwestern (NW) region. Nonlinear force-free extrapolations at the time of the impulsive peaks show closed field lines connecting the NW region to the southeastern part of the ribbon, and the magnetic topology revealed clusters of nulls. These observations suggest a spine-and-fan geometry, and based on these observations, we interpret the second γ-ray peak as being due to the predominant acceleration of ions in a region with multiple null points. The >100 MeV emission from this flare also exhibits a delayed phase with an exponential decay of roughly 350 s. We find that the delayed emission is consistent with ions being trapped in a closed flux tube with gradual escape via their loss cone to the chromosphere.

Pesce-Rollins, Melissa [Istituto Nazionale di Fisi↗

DOE OSTI2026

Distortion of a Relativistic Jet Echoing a Magnetic Flux Eruption

Magnetized accretion onto spinning black holes (BHs) can accumulate a large magnetic flux across the event horizon and launch a pair of relativistic jets via the Blandford–Znajek mechanism. In the magnetically saturated (arrested) state, excess magnetic flux is ejected from the BH in episodic magnetic flux eruptions, which result in a significant yet temporary reduction of jet power. We analyze results of a high-resolution 3D general-relativistic magnetohydrodynamic numerical simulation of geometrically thick magnetically saturated accretion onto a high-spin Kerr BH for a single cycle of magnetic flux eruption and accumulation. We show that following an eruption, a weakened jet develops a strong helical distortion with a distinct structure of magnetic fields—the poloidal field along the jet core is unaffected by the eruption; while toroidal field lines, ejected from the BH during the eruption and later readvected onto it, form poloidal “bypasses” along the inner jet sheath. Such a distortion may appear in sources fed by geometrically thick accretion flows as an asymmetric superluminal knot, strongly interacting with the jet sheath along an oblique working surface. The jet section repowered by magnetic flux reaccumulated on the BH is tilted by a few degrees, implying significant variations in radiation boost towards observers of BL Lac blazars. The intrinsic structure of the jet spine is consistent with axisymmetric semi-analytical models.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2021

Reconnection-driven Particle Acceleration in Relativistic Shear Flows

Particle energization in shear flows is invoked to explain nonthermal emission from the boundaries of relativistic astrophysical jets. Yet the physics of particle injection, i.e., the mechanism that allows thermal particles to participate in shear-driven acceleration, remains unknown. With particle-in-cell simulations, we study the development of Kelvin–Helmholtz (KH) instabilities seeded by the velocity shear between a relativistic magnetically dominated electron–positron jet and a weakly magnetized electron–ion ambient plasma. Here, we show that, in their nonlinear stages, KH vortices generate kinetic-scale reconnection layers, which efficiently energize the jet particles, thus providing a first-principles mechanism for particle injection into shear-driven acceleration. Our work lends support to spine-sheath models of jet emission—with a fast core/spine surrounded by a slower sheath —and can explain the origin of radio-emitting electrons at the boundaries of relativistic jets.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2025

Single cell RNA sequencing reveals shifts in cell maturity and function of endogenous and infiltrating cell types in response to acute intervertebral disc injury

Intervertebral disc (IVD) degeneration contributes to disabling back pain. Degeneration can be initiated by injury and progressively leads to an irreversible loss of cells and function. IVD function restoration through cell replacement therapies have had limited success due to knowledge gaps in the critical cell populations important for repair. Here, in this study, we used single cell RNA sequencing to identify the transcriptional changes of IVD resident and infiltrating cell populations from Control and Injured coccygeal IVDs extracted from 12-week-old female C57BL/6J mice 7 days post injury. Clustering, gene ontology, and pseudotime trajectory analyses determined transcriptomic divergences with injury, flow cytometry identified they types of infiltrating immune cells, and immunofluorescence was utilized to define mesenchymal stem cell (MSC) localization. We identified 11 distinct clusters that included IVD, immune, vascular cells, and MSCs. Differential gene expression analysis determined that Outer Annulus Fibrosus, Neutrophils, Saa2-High MSCs, Macrophages, and Krt18 + Nucleus Pulposus (NP) cells were the major drivers of transcriptomic differences between Control and Injured cells. Gene ontology revealed that the most upregulated biological pathways were angiogenesis and T cell-related while wound healing and ECM regulation were downregulated. Pseudotime trajectory analyses revealed that IVD injury directed cells towards increased differentiation in all clusters, except for Krt18 + NP cells which remained in a less mature cell state. Saa2-High and Grem1-High MSCs populations shifted towards more differentiated IVD cells profiles with injury and localized distinctly within the IVD. This study revealed novel MSC populations with the potential to be leveraged for future IVD repair studies.

Cartilage↗