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At least 73 records · Page 4

Improving Medication Regimen Recommendation for Parkinson’s Disease Using Sensor Technology

Parkinson’s disease medication treatment planning is generally based on subjective data obtained through clinical, physician-patient interactions. The Personal KinetiGraph™ (PKG) and similar wearable sensors have shown promise in enabling objective, continuous remote health monitoring for Parkinson’s patients. In this proof-of-concept study, we propose to use objective sensor data from the PKG and apply machine learning to cluster patients based on levodopa regimens and response. The resulting clusters are then used to enhance treatment planning by providing improved initial treatment estimates to supplement a physician’s initial assessment. We apply k-means clustering to a dataset of within-subject Parkinson’s medication changes—clinically assessed by the MDS-Unified Parkinson’s Disease Rating Scale-III (MDS-UPDRS-III) and the PKG sensor for movement staging. A random forest classification model was then used to predict patients’ cluster allocation based on their respective demographic information, MDS-UPDRS-III scores, and PKG time-series data. Clinically relevant clusters were partitioned by levodopa dose, medication administration frequency, and total levodopa equivalent daily dose—with the PKG providing similar symptomatic assessments to physician MDS-UPDRS-III scores. A random forest classifier trained on demographic information, MDS-UPDRS-III scores, and PKG time-series data was able to accurately classify subjects of the two most demographically similar clusters with an accuracy of 86.9%, an F1 score of 90.7%, and an AUC of 0.871. A model that relied solely on demographic information and PKG time-series data provided the next best performance with an accuracy of 83.8%, an F1 score of 88.5%, and an AUC of 0.831, hence further enabling fully remote assessments. These computational methods demonstrate the feasibility of using sensor-based data to cluster patients based on their medication responses with further potential to assist with medication recommendations.

59 BASIC BIOLOGICAL SCIENCES↗

Elastic Stacker

Stacker is a library and command-line tool for interacting with components of the Elastic Stack remotely using their APIs. For example, Stacker allows the user to persist API resources to disk and re-create them using the same APIs, potentially allowing configuration to be kept in sync across multiple Elastic Stack instances.

Taliaferro, JamesP.↗

Design, Development and Testing Plan for Energy Efficiency Algorithms Related to Building-Integrated Cooling, Heating, and Power Systems

Building-integrated cooling, heating and power (CHP) systems are more efficient than conventional systems at providing local power and thermal energy, and favorable fuel prices are bound to spur their increased adoption. It is estimated that the total CHP technical potential in the commercial building sector is approximately 76 GW, but only a small fraction of it is actually deployed. Advanced control and monitoring systems that realize the full potential of these CHP systems can transform this capacity into an asset for both the owner and the grid and also accelerate the adoption of these systems in the building sector. However, to realize the full benefit of the CHP systems, we must ensure persistence of energy efficient operations. It has been demonstrated by several studies that as much as 30% of building energy use is wasted. Much of the waste results from the inability to anticipate load variations (design day vs. non-design day operations; diurnal variation of loads), identify improper operation, and efficiently operate, control and maintain building systems. Moreover, many buildings, even those with adequate control infrastructure, lack knowledgeable staff to operate and maintain energy systems. Operators of buildings with CHP systems will constantly need to make tradeoffs (economic dispatch) between onsite power generation and purchasing power, between onsite heat production from distributed generation versus heating/cooling from conventional systems, and different passive and active load management measures. Much of the inefficiency in the current building operations can be eliminated by use of automated performance monitoring (PM), real-time commissioning verification (CxV) and automated fault detection and diagnostic (AFDD) tools. Automation can help system operators make intelligent decisions. Remote and continuous monitoring of system conditions and performance will enable better management and integration of CHP with existing building systems. Continuous PM, real-time CxV and AFDD could alleviate burdens for operations staff, enhance operations and maintenance (O&M), and improve reliability of building and CHP systems. To address the O&M challenges and to provide a means to maximize the rate-of-return of building-integrated CHP systems, the Building Technologies Office (BTO) within the U.S. Department of Energy’s (DOE’s) Office of Energy Efficiency and Renewable Energy (EERE) initiated a project to design, develop, and field test a VOLTTRON™-based supervisory controller and associated open-source algorithms. These algorithms will ensure real-time optimal operation of a building-integrated CHP system, support electric grid reliability, and lead to achieving the goal of a clean, efficient, reliable and affordable next-generation integrated energy systems. This report lists the components for which PM, real-time CxV and AFDD algorithms will be developed, how the algorithms will be tested, and metrics that will be used to validate the algorithms and easy of deployment. Deployment of these algorithms in the field will result in savings reduction in energy consumption of between 10% and 20%.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Implementation Plan for Combined Heat and Power Systems VOLTTRON Controller: Performance Monitoring and Real-Time Commissioning Algorithm Verification

Building-integrated cooling, heating, and power (CHP) systems are more efficient than conventional systems at providing local power and thermal energy, and favorable fuel prices are bound to spur their increased adoption. However, to realize the full benefit of the CHP systems, we must ensure persistence of energy efficient operations. Much of the inefficiency in the current building operations can be eliminated by use of automated performance monitoring (PM), real-time commissioning verification (CxV) and automated fault detection and diagnostic (AFDD) tools. Automation can help system operators make intelligent decisions. Remote and continuous monitoring of system conditions and performance will enable better management and integration of CHP with existing building systems. Continuous PM, real-time CxV, and AFDD could alleviate burdens for operations staff, enhance operations and maintenance (O&M), and improve reliability of building and CHP systems. To address the O&M challenges and to provide a means to maximize the rate-of-return of building-integrated CHP systems, the Building Technologies Office (BTO) within the U.S. Department of Energy’s (DOE’s) Office of Energy Efficiency and Renewable Energy (EERE) initiated a project to design, develop, and field test a VOLTTRON™-based supervisory controller and associated open-source algorithms. These algorithms will ensure real-time optimal operation of a building-integrated CHP system, support electric grid reliability, and lead to achieving the goal of clean, efficient, reliable, and affordable next-generation integrated energy system. Previous report listed the components for which PM, real-time CxV, and AFDD algorithms will be developed, how the algorithms will be tested, and the metrics that will be used to validate the algorithms and their ease of deployment. Deployment of these algorithms in the field will result in a reduction in energy consumption of between 10% and 20% (for both CHP and conventional building systems). This report builds upon the previous report by detailing the process by which PNNL will implement performance monitoring and real-time commissioning algorithms for CHP systems in conjunction with the use of the VOLTTRON CHP economic dispatch agent in host facilities.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Regional Oil and gas Aerial Methane Synthesis model (ROAMS) v2.0

The Regional Oil and gas Aerial Methane Synthesis model is a tool to convert the results of wide-area, source-resolved aerial methane remote sensing surveys of oil and natural gas infrastructure in a given region into methane emissions inventories (estimates of the magnitude and breakdown of methane emissions from the surveyed infrastructure). The tool leverages databases of source-resolved methane emissions detected in aerial surveys, aerial survey coverage information (which areas were measured and when), data summarizing surveyed oil and natural gas infrastructure and production (derived from third-party databases), as well as state-of-the-art mechanistic emissions simulation tools to characterize emissions too small for the aerial system to see. The regional methane emissions estimates produced by this tool are much more granular in both space and asset type than common satellite- or flux tower-based regional estimates. Unlike other tools for converting site-level measurements into regional emissions estimates, our unique geostatistical approach integrates aerially measured emissions with limited need for statistical extrapolation, which can be highly sensitive to modeler assumptions. As a result, ROAMS-based estimates of regional methane emissions from oil and gas activity are widely viewed as highly credible, as evidenced by the success of Dr. Sherwin's recent paper in Nature.

Sherwin, Evan [Lawrence Berkeley National Laborato↗

Tools and Incentives for Implementing Codes of Ethics to Help Prevent the Reemergence of Chemical Weapons

Since the entry into force of the Chemical Weapons Convention (CWC) and the establishment of the Organisation for Prohibition of Chemical Weapons (OPCW) in 1997, 96% of the world’s declared stockpile, comprising 72,305 metric tons of chemical warfare agents have been destroyed. Despite this notable progress, the convergence of chemistry and biology brings new challenges to preventing chemical weapons production, as the technical capability to manipulate the chemistry of microorganisms has diffused beyond the chemical industry and academic research communities. The development and voluntary adoption by chemical practitioners around the world of ethical codes or guidelines, such as The Hague Ethical Guidelines and the Global Chemists’ Code of Ethics (GCCE) , are important steps in strengthening international nonproliferation efforts through their potential to impact the intent of the individual by normalizing ethical behavior. However, the simple act of adopting a code does not guarantee ethical behavior. Care must be taken to ensure those adopting the code understand specifically the behavior being asked of them, and they must be given ample opportunities to practice exercising those behaviors in low-risk situations and encouragement to keep trying when they fail. Furthermore, in small-to-medium chemical companies, concerns that adopting such measures could negatively impact profit margins may dissuade some business owners from voluntarily adopting ethical codes, while a country’s decision makers may not prioritize establishment of new regulatory mechanisms that could address some of these concerns. In this paper, factors that may positively influence a chemical company’s decision to adopt ethical guidelines, such as integration of social sustainability elements into frameworks and approaches to maintain social legitimacy in the eyes of the broader community, are explored. Voluntary adoption of ethical codes gives teeth to arms control regimes. By encouraging chemical companies to become engaged in the community around them and providing easy-to-use tools like scenario-based E-learning to enable remote engagement and facilitate understanding of the principles undergirding the GCCE, they actively participate in making the world a better place and minimizing the potential for reemergence of chemical weapons.

Small Chemical Companies, Codes of Ethics, E-learn↗

S0 Uncrewed Aircraft System Measurement Characterization Field Campaign Report

The lower atmosphere contributes directly to the modulation of weather and climate. Understanding the importance of this part of the atmosphere, scientists have worked to improve the representation of the atmospheric boundary layer in numerical prediction tools. Such work depends upon information from observing systems, including remote sensors, weather balloons, and research aircraft. Recent years have seen significant advances in uncrewed aircraft systems (UAS) for atmospheric research. Those efforts have provided new perspectives on atmospheric and surface conditions, particularly from smaller UAS (sUAS) platforms. This field campaign included collection of data using several sUAS, and comparing the sUAS data to those from different observing facilities at the U.S. Department of Energy (DOE) Atmospheric Radiation Measurement (ARM) user facility’s Southern Great Plains (SGP) observatory in Oklahoma. Over the course of one week, the Black Swift Technologies and University of Nebraska teams conducted flights for the sole purpose of system evaluation and intercomparison. In addition, these teams conducted joint flight operations at the Marshall, Oklahoma Mesonet site alongside teams from the University of Colorado, University of Oklahoma, and Oklahoma State University to collect additional data for side-by-side comparison. Platforms operated by Black Swift Technologies and the University of Nebraska under this project included one fixed-wing and two rotary-wing platforms, as well as an instrumented surface vehicle. These include the Black Swift Technologies S0 UAS, the University of Nebraska M600 UAS, a University of Nebraska-operated Meteomatics Meteodrone UAS, and the University of Nebraska CoMeT (Combined Mesonet and Tracker) vehicle. Additional details on all of these platforms can be found in de Boer et al. (in prep). In total, 95 sUAS flights were conducted for a combined total of 18.6 flight hours. The S0 was operated both to the south and north of the SGP 60 m tower, while the M600 and Meteodrone were operated directly to the east of the tower. Weather conditions were generally good, with moderate winds. Flights were conducted both to follow the extra radiosondes that were launched as part of this campaign, as well as to conduct extended statistical sampling at tower instrument heights. The later flights also provided data for statistical platform intercomparison.

54 ENVIRONMENTAL SCIENCES↗

Evaluation of artificial neural network performance for classification of potato plants infected with potato virus Y using spectral data on multiple varieties and genotypes

Potato virus Y (Potyviridae, PVY) is a plant virus that poses a significant threat to potato producers on a global basis. The pathogen has disrupted seed potato supplies and negatively impacted yield and quality of commercial potato crops. The potato industry currently manages PVY infection levels via insecticide applications, regional seed certification programs that rely on field scouting to visually assess individual plants for infection status, and destructive and costly tissue sampling coupled with laboratory assays. Despite these efforts, PVY continues to confound potato industry stakeholders resulting in economic harm. Remote sensing and machine learning provide for the development of new tools to more accurately detect and spatially quantify PVY-infected plants versus the current state of the art. However, there is a need to understand how the occurrence of many different potato varieties impact the dynamics of developing models to detect potato plants impacted with PVY and their potential effectiveness. This study evaluates classification modelling outcomes using spectral datasets collected in different temporal and spatial environments (greenhouse and a production field) on multiple potato varieties consisting of labelled instances of plants infected with PVY and those not infected with the virus. A modelling framework was developed to support iterative modelling runs using artificial neural network (ANN) architectures configured as binary classifiers to develop sample populations to support statistical analysis on model performance using specific spectral subsets. When using spectral data to detect PVY-infected plants, ANN models achieved the highest mean accuracy of 0.894 on a single variety. Conversely, the same ANN model architecture only achieved a mean accuracy of 0.575 on a spectral data set representing 29 potato breeding lines. Additionally, statistical analysis indicates spectral regions including the red edge, near infrared and shortwave infrared contain more important spectral features for the ANN classifier introduced in this research.

60 APPLIED LIFE SCIENCES↗

Mauka Energy FEVER Tool DOE SBIR Phase 1 Final Scientific/Technical Report

This report is on the Forestry Electric Vehicle Energy Routing (FEVER) Tool, a novel software system developed to support heavy-duty electric vehicle (EV) operations in remote, forested, and mountainous regions. The Phase I project aimed to demonstrate the feasibility of modeling EV energy consumption using terrain elevation, road conditions, and route features specific to forestry logistics. The tool combines geographic information systems (GIS), electric motor physics, and vehicle-specific data to calculate feasible, energy-efficient routes. Collaborations with Oregon State University’s Research Forests and Titan Freight Systems enabled collection and validation of GPS and elevation-based trip data. The FEVER Tool offers substantial opportunities for the efficient management of medium- and heavy-duty electric vehicles in sectors like forestry, agriculture, mining, defense and waste management—areas which are beginning to adopt HDEVs. The project demonstrated technical feasibility and lays the groundwork for commercial development and deployment in other industries and environmental conditions in Phase II.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗

Deep Learning Classification of Cheatgrass Invasion in the Western United States Using Biophysical and Remote Sensing Data

Cheatgrass (Bromus tectorum) invasion is driving an emerging cycle of increased fire frequency and irreversible loss of wildlife habitat in the western US. Yet, detailed spatial information about its occurrence is still lacking for much of its presumably invaded range. Deep learning (DL) has demonstrated success for remote sensing applications but is less tested on more challenging tasks like identifying biological invasions using sub-pixel phenomena. We compare two DL architectures and the more conventional Random Forest and Logistic Regression methods to improve upon a previous effort to map cheatgrass occurrence at >2% canopy cover. High-dimensional sets of biophysical, MODIS, and Landsat-7 ETM+ predictor variables are also compared to evaluate different multi-modal data strategies. All model configurations improved results relative to the case study and accuracy generally improved by combining data from both sensors with biophysical data. Cheatgrass occurrence is mapped at 30 m ground sample distance (GSD) with an estimated 78.1% accuracy, compared to 250-m GSD and 71% map accuracy in the case study. Furthermore, DL is shown to be competitive with well-established machine learning methods in a limited data regime, suggesting it can be an effective tool for mapping biological invasions and more broadly for multi-modal remote sensing applications.

54 ENVIRONMENTAL SCIENCES↗

Regional Oil and gas Aerial Methane Synthesis model (Analytica) (ROAMS Analytica) v1.5.2

The Regional Oil and gas Aerial Methane Synthesis model (Analytica) is a tool to convert the results of wide-area, source-resolved aerial methane remote sensing surveys of oil and natural gas infrastructure in a given region into methane emissions inventories (estimates of the magnitude and breakdown of methane emissions from the surveyed infrastructure). This version is written in the Analytica programming language, and this version accompanies a correction in preparation for submission to Sherwin et al. 2024 (Nature). The tool leverages databases of source-resolved methane emissions detected in aerial surveys, aerial survey coverage information (which areas were measured and when), data summarizing surveyed oil and natural gas infrastructure and production (derived from third-party databases), as well as state-of-the-art mechanistic emissions simulation tools to characterize emissions too small for the aerial system to see. The regional methane emissions estimates produced by this tool are much more granular in both space and asset type than common satellite- or flux tower-based regional estimates. Unlike other tools for converting site-level measurements into regional emissions estimates, our unique geostatistical approach integrates aerially measured emissions with limited need for statistical extrapolation, which can be highly sensitive to modeler assumptions. As a result, ROAMS-based estimates of regional methane emissions from oil and gas activity are widely viewed as highly credible, as evidenced by the success of Dr. Sherwin's recent paper in Nature.

Sherwin, Evan [Lawrence Berkeley National Laborato↗

GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser

Access to web-based platforms has enabled scientists to perform research remotely. A critical aspect of mass spectrometry data analysis is the inspection, analysis, and visualization of the raw data to validate data quality and confirm statistical observations. We developed the GNPS Dashboard, a web-based data visualization tool, to facilitate synchronous collaborative inspection, visualization, and analysis of private and public mass spectrometry data remotely.

59 BASIC BIOLOGICAL SCIENCES↗

Detecting Coastal Wetland Degradation by Combining Remote Sensing and Hydrologic Modeling

Sea-level rise and climate change stresses pose increasing threats to coastal wetlands that are vital to wildlife habitats, carbon sequestration, water supply, and other ecosystem services with global significance. However, existing studies are limited in individual sites, and large-scale mapping of coastal wetland degradation patterns over a long period is rare. Our study developed a new framework to detect spatial and temporal patterns of coastal wetland degradation by analyzing fine-scale, long-term remotely sensed Normalized Difference Vegetation Index (NDVI) data. Then, this framework was tested to track the degradation of coastal wetlands at the Alligator River National Wildlife Refuge (ARNWR) in North Carolina, United States, during the period from 1995 to 2019. We identified six types of coastal wetland degradation in the study area. Most of the detected degradation was located within 2 km from the shoreline and occurred in the past five years. Further, we used a state-of-the-art coastal hydrologic model, PIHM-Wetland, to investigate key hydrologic processes/variables that control the coastal wetland degradation. The temporal and spatial distributions of simulated coastal flooding and saltwater intrusion confirmed the location and timing of wetland degradation detected by remote sensing. The combined method also quantified the possible critical thresholds of water tables for wetland degradation. The remote sensing–hydrologic model integrated scheme proposed in this study provides a new tool for detecting and understanding coastal wetland degradation mechanisms. Our study approach can also be extended to other coastal wetland regions to understand how climate change and sea-level rise impact wetland transformations.

54 ENVIRONMENTAL SCIENCES↗

Tools for supporting solution scattering during the COVID-19 pandemic

During the COVID-19 pandemic, synchrotron beamlines were forced to limit user access. Performing routine measurements became a challenge. At the Life Science X-ray Scattering (LiX) beamline, new instrumentation and mail-in protocols have been developed to remove the access barrier to solution scattering measurements. Our efforts took advantage of existing instrumentation and coincided with the larger effort at NSLS-II to support remote measurements. Given the limited staff–user interaction for mail-in measurements, additional software tools have been developed to ensure data quality, to automate the adjustments in data processing, as users would otherwise rely on the experience of the beamline staff, and produce a summary of the initial assessments of the data. This report describes the details of these developments.

99 GENERAL AND MISCELLANEOUS↗

Remote sensing from unoccupied aerial systems: Opportunities to enhance Arctic plant ecology in a changing climate

The Arctic is warming at a faster rate than any other biome on Earth, resulting in widespread changes in vegetation composition, structure, and function that have important feedbacks to the global climate system. The heterogeneous nature of arctic landscapes creates challenges for monitoring and improving understanding of these ecosystems, as current efforts typically rely on ground, airborne, or satellite-based observations that are limited in space, time, or pixel resolution. The use of remote sensing instruments on small Unoccupied Aerial Systems (UASs) has emerged as an important tool to bridge the gap between detailed, but spatially limited ground-level measurements, and lower resolution, but spatially extensive high-altitude airborne and satellite observations. UASs allow researchers to view, describe and quantify vegetation dynamics at fine spatial scales (1-10 cm) over areas much larger than typical field plots. UASs can be deployed with a high degree of temporal flexibility, enabling observation across diurnal, seasonal, and annual timescales. In this work, we review how established and emerging UAS remote sensing technologies can enhance arctic plant ecological research by quantifying fine-scale vegetation patterns and processes, and by enhancing the ability to link ground-based measurements with broader-scale information obtained from airborne and satellite platforms. Synthesis: Improved ecological understanding and model representation of arctic vegetation is needed to forecast the fate of the Arctic in a rapidly changing climate. Observations from UASs provide an approach to address this need, however, the use of this technology in the Arctic currently remains limited. Here we share recommendations to better enable and encourage the use of UASs to improve the description, scaling, and model representation of arctic vegetation.

54 ENVIRONMENTAL SCIENCES↗

Data-Driven Analysis Tool Plays Critical Role in Climate Neutral Buildings: Improving energy efficiency and reducing emissions

A new web application that advances the science of data-driven, remote building energy analysis to increase the speed and scale of retrofits worldwide could play a key role in reducing greenhouse gas (GHG) emissions and meeting the Paris Agreement's targets. Here, the multi-award-winning Building Efficiency Targeting Tool for Energy Retrofits (BETTER) is a public access web application (better.lbl.gov) sponsored by the U.S. Department of Energy (DOE) and developed by Lawrence Berkeley National Laboratory (Berkeley Lab) and Johnson Controls.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Management of the Three Mile Island, Unit 2, Accident Corium and Severely Damaged Fuel Debris

The Three Mile Island, Unit Two (TMI-2) pressurized water reactor core melted down in 1979 due to an untimely combination of maintenance problems that led to a loss of feedwater, followed by a series of operational misunderstandings and errors. The melted core recovery process required development of a wide array of tools. After approximately three years of water management and other cleanup actions, the first views of the core revealed a much higher degree of damage than previously expected. Approximately 62 metric tons of the core had melted, leaving only 42 of the 177 fuel assemblies standing with a majority of rods intact. The core to be recovered was composed of loose debris and a solidified mass of formerly molten fuel. Robotic tools that had been designed for the task were of limited effectiveness due to the range of material types and phases. Over a period of several years, the central melt was broken up, primarily by use of a core-boring drill originally designed to acquire samples through the depth of the debris field. The broken pieces were loaded into specially designed debris canisters by use of long-handled pick-and-place tools and suctioned into baffled knockout canisters using an airlift vacuum system. A remotely operable underwater plasma arc torch was developed for removal of the lower core support structure to be able to retrieve the fuel pieces and secondary melt that had accumulated on the bottom reactor vessel head. Canister design played a central role in defining the initial retrieval process and later affected transportation, interim wet and its current interim dry storage. Due to concerns about the potential for radiolysis of residual water in the debris and other canister material, the canisters were fitted with hydrogen recombiner catalyst units to prevent a buildup of flammable gas and potential pressurization. To confirm the effectiveness of the recombiners during shipping, eight dewatered canisters were kept sealed for up to 205 days with periodic sampling of the headspace gas. The highest hydrogen value (9 vol%) was observed in a canister held for 147 days while the longest stored canister resulted in a 5% hydrogen concentration. The oxygen concentration never exceeded 0.5 %, and the primary backfill was >80% argon, meaning there was no flammability risk. Radiolytic hydrogen was also observed in wet pool storage, where the vented canisters discharged a portion of the water backfill as a result of gas production. The 344 canisters (268 fuel debris, 62 filter, and 12 knockout type) were dewatered, loaded in groups of seven into a double barrier shipping cask, and transported to the U.S. Department of Energy site in Idaho for 10 years of pool storage.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗