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All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Data and scripts associated with a manuscript modeling microbial regulation of priming effects

This data package is associated with the publication “Modeling Microbial Regulatory Feedback in Organic Matter Decomposition Identifies Copiotrophic Traits as Key Drivers of Positive Priming” published as a preprint on BioRXiv by Ahamed et al. (2026); https://doi.org/10.1101/2024.08.11.607483. The package contains MATLAB scripts and saved simulation outputs used to implement a cybernetic model of microbial regulation during complex organic matter (OM) decomposition governing priming effects. It includes models of (i) single microbial functional groups (copiotrophic or oligotrophic degraders) and (ii) binary consortia composed of degraders and non-degraders with contrasting or common growth traits. Simulation results were generated using Monte Carlo analyses, with randomized key model parameters across a range of environmental mixing fractions of complex and labile OM. The dataset was created to provide a transparent and reusable computational framework for systematically exploring how microbial growth traits, metabolic regulation, and community composition influence OM decomposition dynamics and priming effects. For details on how to navigate data packages generated by this project, see https://data.ess-dive.lbl.gov/portals/PNNLRiverCorridorSFA/About. In addition to a readme, this data package also includes a file-level metadata (FLMD) file that describes each file and a data dictionary (DD) that describes the variable definitions. This package includes: (1) annotated MATLAB code implementing the system of ordinary differential equations and cybernetic control laws; (2) saved output files containing data (e.g., biomass, substrates, enzyme levels, priming metrics); and (3) scripts for processing saved outputs and regenerating figures. Specifically, the data package contains three main MATLAB scripts: runPrimingModel.m, runPlotData.m, and runPlotSuppFigS1.m, along with this readme and supporting documentation. Users should begin with runPrimingModel.m, which contains the annotated code implementing the system of ordinary differential equations and cybernetic control laws. This script runs the Monte Carlo simulations of microbial OM decomposition and allows users to modify microbial trait definitions, adjust parameter distributions, or define new community configurations. Simulation outputs are automatically saved as .mat files in the folder named SavedData, which stores all pre-generated results included in this package. The second script, runPlotData.m, reads files from the SavedData folder and processes them to regenerate the figures presented in the manuscript. The third script, runPlotSuppFigS1.m, specifically generates Figure S1 in the Supplementary Material of the manuscript. The package also includes the aforementioned files in non-proprietary .txt format. If users intend to use them, they should first save the files in their respective .m or .mat formats prior to execution in MATLAB.

Biomass concentration↗
DOE OSTI2026

Alumina Priming-Mediated Enhanced Binding of Diethylzinc with Carbonyl Groups in Poly(Methyl Methacrylate) during Vapor-Phase Infiltration

Vapor-phase infiltration (VPI) of inorganic materials in polymers is increasingly becoming popular for synthesizing various functional hybrid materials. While AlO x infiltration using trimethylaluminum (TMA) has been extensively studied, the mechanism of diethylzinc (DEZ)-based ZnO x infiltration, especially one that is initiated by AlO x priming, has not received much attention because highly reactive hydroxyl groups generated by AlO x -priming are expected to dominate the initial binding of DEZ, thus enabling the overall ZnO x VPI. Here, we interrogate the ZnO x infiltration mechanism in AlO x -primed poly(methyl methacrylate) (PMMA) in comparison to the control AlO x -only infiltration by utilizing a suite of complementary characterizations, including quartz crystal microbalance mass gain measurement, transmission electron microscopy, infrared reflection–absorption spectroscopy (IRRAS), and synchrotron X-ray absorption spectroscopy (XAS). The multivalent TMA precursor and associated hyperbranched AlO x network can quickly saturate the AlO x infiltration by clogging the polymer-free volume near the top. On the contrary, the ZnO x infiltration using divalent DEZ precursor, once activated via AlO x -priming, can lead to accelerated ZnOx infiltration. With the help of IRRAS, XAS, and density functional theory (DFT) simulations, we uncover that the AlO x -priming enhances the reactivity of neighboring carbonyl groups toward DEZ and opens up simultaneous reaction pathways, leading to accelerated high-fidelity infiltration of ZnO x .

36 MATERIALS SCIENCE↗
NASA NTRS1976

Conversion of prime agricultural land to urban land uses in Kansas City

In an expanding urban environment, agriculture and urban land uses are the two primary competitors for regional land resources. As a result of an increasing awareness of the effects which urban expansion has upon the regional environment, the conversion of prime agricultural land to urban land uses has become a point of concern to urban planners. A study was undertaken for the Kansas City Metropolitan Region, to determine the rate at which prime agricultural land has been converted to urban land uses over a five year period from 1969 to 1974. Using NASA high altitude color infrared imagery acquired over the city in October, 1969 and in May, 1974 to monitor the extent and location of urban expansion in the interim period, it was revealed that 42% of that expansion had occurred upon land classified as having prime agricultural potential. This involved a total of 10,727 acres of prime agricultural land and indicated a 7% increase over the 1969 which showed that 35% of the urban area had been developed on prime agricultural land.

Shaklee, R. V.↗
NASA NTRS1977

Effects of heat treating PM Rene' 95 slightly below the gamma-prime solvus

An investigation was performed on As-HIP Rene' 95 to obtain additional information on the variation of the amount of gamma-prime with solutioning temperatures near the gamma-prime solvus temperature and the resulting effects on tensile and stress rupture strengths of As-HIP Rene' 95. The amount of gamma-prime phase was found to increase at a rate of about 0.5% per degree Celsius as the temperature decreased from the solvus temperature to about 50 C below the gamma-prime solvus temperature. The change in the amount of gamma-prime phase with decreasing solutioning temperature was observed to be primarily associated with decreasing solubilities of Al+Ti+Nb and increasing solubility of Cr in the gamma phase. For As-HIP Rene' 95 solutioned at either 1107 or 1135 C and subsequently water-quenched and double aged for 4 hours at 815 C followed by 24 hours at 650 C, the higher solution temperature resulted in significantly greater yield strengths at room temperature and 650 C as well as a greater room-temperature ultimate strength. Also, longer stress rupture lives at 650 C were associated with the higher solution temperature.

Dreshfield, R. L.↗
NASA NTRS1985

pH profile of the adsorption of nucleotides onto montmorillonite. II - Adsorption and desorption of 5-prime-AMP in iron-calcium montmorillonite systems

The interaction of 5-prime-AMP with montmorillonite saturated with various ratios of two metals found ubiquitously on the surface of earth, that is, iron and calcium, is investigated. Adsorption and desorption of the nucleotide were studied in the pH range of 2-12 at three levels of addition: 0.080, 0.268 and 0.803 mmole 5-prime-AMP per gram of clay. Two desorption stages were employed - H2O wash and NaOH extraction (pH = 12.0). 5-prime-AMP was preferentially adsorbed on the Fe-containing clays relative to the Ca clay. The nucleotide was fully recovered by the two desorption stages, mostly by the NaOH extraction. The evidence at hand indicates that 5-prime-AMP reaction with clay is affected by electrostatic interactions involving both attraction and repulsion forces. Some specific adsorption, possibly the result of covalent bonding and complex formation with the adsorbed ion, cannot be ruled out for iron but does not appear to operate for calcium. Changes in pH cause varying degrees of attaction and repulsion of 5-prime-AMP and may have been operating on the primitive earth, leading to sequences of adsorption and release of this biomolecule.

Banin, A.↗
NASA NTRS1985

Temperature dependence of gamma-gamma prime lattice mismatch in nickel-base superalloys

High temperature X-ray diffraction techniques were used to determine the gamma-gamma prime lattice mismatch of three different nickel-base superalloys at temperatures between 18 and 1000 C. The measurements were performed on oriented single-crystal disks which had been aged to produce a semicoherent gamma-gamma prime structure. The thermal expansion of the lattice parameters of the gamma and gamma-prime phases was described by a second-order polynomial expression. The expansion of the gamma-prime phase was consistently smaller than that of the gamma phase, which caused the lattice mismatch to become more negative at higher temperatures. It was also shown that high values of lattice mismatch resulted in increased rates of directional gamma-prime coarsening during elevated temperature creep exposure.

Nathal, M. V.↗
NASA NTRS1989

PRIME: A bottom-up approach to probabilistic rule development

PRIME is a system to be used by an intelligent machine to allow it to operate in an abstract but uncertain (or stochastic) environment. It maintains a model of the effects of the machine's actions in the form of a rule base, which is induced from experience. This bottom-up approach to rule development allows the model to adapt to changes in the environment. Each rule consists of a condition under which the rule is active, an action, the effect of the action on the environment, and an estimate of the probability of this effect occurring. The effect probabilities are used to model the uncertainty in the environment, permitting multiple possible effects for a single action under a particular set of conditions. The objective of the intelligent machine is to satisfy user-specified goals with maximum probability of success. PRIME fulfills this requirement in two ways: it continuously updates the rule base with the most recent information, to ensure the validity of the model; and it generates plans which have the maximum probability of achieving the goals, based on the probability estimates in the rule base. PRIME is composed of three main processes: exploration, generalization, and planning. In exploration, the machine executes various randomly chosen actions, observes the effects on the environment, and updates the rule base accordingly. This process is used to develop the rule base in simulation, as well as to supplement the current knowledge during normal operation. Generalization is the procedure used to induce general rules from experience, which is encoded in the form of specific rules. These general rules extend the machine's knowledge to situations which have not been encountered yet, thereby increasing the capability of the machine to plan effectively. Planning is the process of constructing an optimal sequence of actions to satisfy a goal, using the rule base to predict the effects of these actions and to determine the probability of success of the plan. The rule representation and many other data structures were specifically chosen to maximize the efficiency of these processes. A simulated environment was designed to test the performance of PRIME. The results of experimentation were largely negative. The main problem was that the domain coverage of the rules was inadequate for the number of rules stored in the rule base, due to redundancies in general rules and numerous rules covering ineffective actions. It was determined that a more efficient generalization, and some form of goal-directed exploration, are necessary in order to solve most of the current deficiencies in PRIME.

Miller, Scott A.↗
NASA NTRS2003

The effects of study-task relevance on perceptual repetition priming

Repetition priming is easily elicited in many traditional paradigms, and the possibility that perceptual priming may be other than an automatic consequence of perception has received little consideration. This issue is explored in two experiments. In Experiment 1, participants named the target from a four-item category search study task more quickly than the nontarget study items at a later naming test. Experiment 2 extended this finding to conditions in which stimuli were individually presented at study. In three different study tasks, stimuli relevant to study-task completion elicited priming on a later test, but stimuli presented outside the context of a task did not. In both experiments, recognition was above chance for nonrelevant stimuli, suggesting that participants explicitly remembered stimuli that did not elicit priming. Results suggest that priming is sensitive to study-task demands and may reflect a more adaptive and flexible mechanism for modification of perceptual processing than previously appreciated.

Visual Perception↗
NASA NTRS2017

Fluid Transient Analysis During Priming of Evacuated Line

Pressure surges are critical in the design of spacecraft propellant feed lines. The pressure transients that occur during priming of feed lines are very important in the design and analysis of liquid propulsion systems. During the start-up of the propulsion system of a spacecraft, the process of filling of an evacuated pipeline is called priming. Priming can generate severe pressure peaks due to the slam (water hammer) of the propellant against a closed thruster valve. The downstream conditions strongly affect the pressure surge. In space systems, satellites, or interplanetary probes, the propellant lines are vacuum-pumped or filled with low pressure helium or nitrogen before the launch. Before operations, these lines are primed with a vaporizing liquid, sometimes in the presence of a non-condensable gas (NCG), which produces water hammer phenomena. The objective of the current study is to use a finite volume based network flow solver (Generalized Fluid System Simulation Program, GFSSP) for the numerical simulation of Priming in (a) a straight feedline and (b) a flow network. The geometrical configurations and dimensions for the pipe and other components used for the current study are identical to experimental study of Prickett et al.

Bandyopadhyay, Alak↗
DOE OSTI2022

Precision genome editing in plants using gene targeting and prime editing: existing and emerging strategies

Precise modification of plant genomes, such as seamless insertion, deletion, or replacement of DNA sequences at a predefined site, is a challenging task. Gene targeting (GT) and prime editing are currently the best approaches for this purpose. However, these techniques are inefficient in plants, which limits their applications for crop breeding programs. Recently, substantial developments have been made to improve the efficiency of these techniques in plants. Several strategies, such as RNA donor templating, chemically modified donor DNA template, and tandem-repeat homology-directed repair, are aimed at improving GT. Additionally, improved prime editing gRNA design, use of engineered reverse transcriptase enzymes, and splitting prime editing components have improved the efficacy of prime editing in plants. These emerging strategies and existing technologies are reviewed along with various perspectives on their future improvement and the development of robust precision genome editing technologies for plants.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2024

EFIT-Prime: Probabilistic and physics-constrained reduced-order neural network model for equilibrium reconstruction in DIII-D

We introduce EFIT-Prime, a novel machine learning surrogate model for EFIT (Equilibrium FIT) that integrates probabilistic and physics-informed methodologies to overcome typical limitations associated with deterministic and ad hoc neural network architectures. EFIT-Prime utilizes a neural architecture search-based deep ensemble for robust uncertainty quantification, providing scalable and efficient neural architectures that comprehensively quantify both data and model uncertainties. Physically informed by the Grad–Shafranov equation, EFIT-Prime applies a constraint on the current density J tor and a smoothness constraint on the first derivative of the poloidal flux, ensuring physically plausible solutions. Furthermore, the spatial location of the diagnostics is explicitly incorporated in the inputs to account for their spatial correlation. Extensive evaluations demonstrate EFIT-Prime's accuracy and robustness across diverse scenarios, most notably showing good generalization on negative-triangularity discharges that were excluded from training. Timing studies indicate an ensemble inference time of 15 ms for predicting a new equilibrium, offering the possibility of plasma control in real-time, if the model is optimized for speed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2020

CCAT-prime: Designs and status of the first light 280 GHz MKID array and mod-cam receiver

The CCAT-prime project's first light array will be deployed in Mod-Cam, a single-module testbed and first light cryostat, on the Fred Young Submillimeter Telescope (FYST) in Chile's high Atacama desert in late 2022. FYST is a six-meter aperture telescope being built on Cerro Chajnantor at an elevation of 5600 meters to observe at millimeter and submillimeter wavelengths. 1 Mod-Cam will pave the way for Prime-Cam, the primary first generation instrument, which will house up to seven instrument modules to simultaneously observe the sky and study a diverse set of science goals from monitoring protostars to probing distant galaxy clusters and characterizing the cosmic microwave background (CMB). At least one feedhorn-coupled array of microwave kinetic inductance detectors (MKIDs) centered on 280 GHz will be included in Mod-Cam at first light, with additional instrument modules to be deployed along with Prime-Cam in stages. The first 280 GHz detector array was fabricated by the Quantum Sensors Group at NIST in Boulder, CO and includes 3,456 polarization- sensitive MKIDs. Current mechanical designs allow for up to three hexagonal arrays to be placed in each single instrument module. We present details on this first light detector array, including mechanical designs and cold readout plans, as well as introducing Mod-Cam as both a testbed and predecessor to Prime-Cam.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

$$\pi ^-p\rightarrow \eta ^{(\prime )}\, \pi ^- p$$ in the double-Regge region: Joint Physics Analysis Center

Abstract The production of $$\eta ^{(\prime )}\pi $$ η ( ′ ) π pairs constitutes one of the golden channels to search for hybrid exotics, with explicit gluonic degrees of freedom. Understanding the dynamics and backgrounds associated to $$\eta ^{(\prime )}\pi $$ η ( ′ ) π production above the resonance region is required to impose additional constraints to the resonance extraction. We consider the reaction $$\pi ^-p\rightarrow \eta ^{(\prime )} \pi ^- \,p$$ π - p → η ( ′ ) π - p measured by COMPASS. We show that the data in $$2.4< m_{\eta ^{(\prime )}\pi } < 3.0{\mathrm {\,GeV}} $$ 2.4 < m η ( ′ ) π < 3.0 GeV can be described by amplitudes based on double-Regge exchanges. The angular distribution of the meson pairs, in particular in the $$\eta ' \pi $$ η ′ π channel, can be attributed to flavor singlet exchanges, suggesting the presence of a large gluon content that couples strongly to the produced mesons.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2017

Minimization of spin tune spread by matching dispersion prime at RHIC

At RHIC, the spin polarization is preserved with a pair of Siberian snakes on the oppo- site sides in each ring. The polarized proton beam with finite spin tune spread might cross spin resonances multiple times in two cases, one is when beam going through strong spin intrinsic resonances during acceleration, the other is when sweeping spin flipper’ frequency across the spin tune to flip the direction of spin polarization. The consequence is loss of spin polarization in both cases. Therefore, a scheme of min- imizing the spin tune spread by matching the dispersion primes at the two snakes was introduced based on the fact that the spin tune spread is proportional to the difference of dispersion primes at the two snakes. The scheme was implemented at fixed energies for the spin flipper study and during beam acceleration for better spin polarization transmission efficiency. The effect of minimizing the spin tune spread by matching the dispersion primes was observed and confirmed experimentally. The principle of minimizing the spin tune spread by matching the dispersion primes, the impact on the beam optics, and the effect of a narrower spin tune spread are presented in this report.

43 PARTICLE ACCELERATORS↗
NASA NTRS1973

On the minimization of the prime power consumption of a coupling-modulated gas laser transmitter

The prime power requirements of a coupling-modulated gas laser transmitter are presented. The latter consists of a gas discharge tube and electro-optic modulator inside a laser resonator. In performing the calculations, the laser discharge length and the modulator voltage are simultaneously varied so that the transmitted power remains constant. In this way, tradeoffs can be made between the prime power supplied individually to the discharge tube and to the modulator driver to obtain a transmitter configuration which minimizes the total prime power consumption. An analytical expression is derived which describes the effects of information bandwidth and transmitter output power on the prime power requirements. Specific numerical results are obtained for a CO2 laser transmitter based on presently available experimental data.

Degnan, J. J.↗
NASA NTRS1974

Minimization of the prime power consumption of a coupling-modulated gas laser transmitter

The present article addresses itself to the prime power requirements of a coupling-modulated gas laser transmitter. The latter consists of a gas discharge tube and electrooptic modulator inside a laser resonator. In performing the calculations, the laser discharge length and the modulator voltage are simultaneously varied so that the transmitted power remains constant. In this way, tradeoffs can be made between the prime power supplied individually to the discharge tube and to the modulator driver to obtain a transmitter configuration that minimizes the total prime power consumption. An analytical expression is derived that describes the effects of information bandwidth and transmitter output power on the prime power requirements. Specific numerical results are obtained for a CO2 laser transmitter based on presently available experimental data.

Degnan, J. J.↗
NASA NTRS1976

Growth kinetics of gamma-prime precipitates in a directionally solidified eutectic, gamma/gamma-prime-delta

A directionally solidified eutectic alloy (DSEA), of those viewed as potential candidates for the next generation of aircraft gas turbine blade materials, is studied for the gamma-prime growth kinetics, in the system Ni-Nb-Cr-Al, specifically: Ni-20 w/o Nb-6 w/o Cr-2.5 w/o Al gamma/gamma-prime-delta DSEA. Heat treatment, polishing and etching, and preparation for electron micrography are described, and the size distribution of gamma-prime phase following various anneals is plotted, along with gamma-prime growth kinetics in this specific DSEA, and the cube of gamma-prime particle size vs anneal time. Activation energies and coarsening kinetics are studied.

Tewari, S. N.↗
NASA NTRS1982

Radiative lifetimes and quenching rate coefficients for directly excited rotational levels of OH/A 2Sigma +, v-prime = 0/

A narrow-bandwidth pulsed dye laser was used to excite OH X 2Pi i radicals to the A 2Sigma(+) state by pumping in the (0, 0) vibrational band around 308 nm. The radiative lifetimes of specific (K-prime, J-prime) rotational levels in v-prime = 0 were measured at low pressures (not greater than 1 mtorr), which yielded a mean lifetime of 0.71 + or - 0.009 microsec (2 sigma). Electronic quenching rate constants for N2, O2, H2O, and H2 were measured for a range of initially excited rotational levels. A strong dependence of this rate constant on the initially excited rotational level was found for N2, and less markedly for O2, with the rate constant tending to increase for the lowest rotational levels K-prime not greater than 3. The implications of these results for the laser-induced fluorescence detection of atmospheric OH are discussed.

Mcdermid, I. S.↗