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All sources NASA NTRS DOE OSTI

DOE OSTI2026

Dataset describing two reference models for full-spectral lighting and daylight simulations together with implementations for two software systems

A dataset of two spectral lighting simulation reference models - one office and one factory hall - is presented. It aims to demonstrate and support full-spectral daylight and electric lighting simulations and facilitate evaluation of non-visual effects of light. The dataset includes Rhino CAD geometry, comprehensive spectral material and light source data and window system BSDF data. Example implementations in the two software tools, Radiance and OWL, enable reproducible workflows and support adoption in other software. The dataset is openly available on Zenodo. The office model reproduces Room 518 at the University of Innsbruck, including a west-facing façade and interior furnishings. The factory hall model follows the proposed geometry in the European standard 15193 for building energy performance. Interior reflectances in the office were measured in-situ using a handheld spectrometer. Exterior spectra and factory hall materials matching specified reflectances were obtained from an online spectral materials database. Glazing transmittance was derived from IGDB data using LBNL Optics/WINDOW. BSDFs for venetian blinds at various tilt angles, and for a diffusing pane adapted from the Complex Glazing Database, were generated in WINDOW. Luminaires in both models are specified with photometric files (Eulumdat/IES) and lamp spectra (Fluorescent 840, 4000 K LED). The provided example implementations (Radiance, OWL) include prepared input data and scripts to run first spectral simulations; example results are also included. The dataset is prepared to support reuse by researchers, designers and software developers for method validation, software engineering and comparison, and development of spectral metrics and controls.

Geisler-Moroder, David↗

DOE OSTI2015

No evidence of a threshold in traffic volume affecting road-kill mortality at a large spatio-temporal scale

Previous studies have found that the relationship between wildlife road mortality and traffic volume follows a threshold effect on low traffic volume roads. We aimed at evaluating the response of several species to increasing traffic intensity on highways over a large geographic area and temporal period. We used data of four terrestrial vertebrate species with different biological and ecological features known by their high road-kill rates: the barn owl (Tyto alba), hedgehog (Erinaceus europaeus), red fox (Vulpes vulpes) and European rabbit (Oryctolagus cuniculus). Additionally, we checked whether road-kill likelihood varies when traffic patterns depart from the average. We used annual average daily traffic (AADT) and road-kill records observed along 1000 km of highways in Portugal over seven consecutive years (2003–2009). We fitted candidate models using Generalized Linear Models with a binomial distribution through a sample unit of 1 km segments to describe the effect of traffic on the probability of finding at least one victim in each segment during the study. We also assigned for each road-kill record the traffic of that day and the AADT on that year to test for differences using Paired Student's t-test. Mortality risk declined significantly with traffic volume but varied among species: the probability of finding road-killed red foxes and rabbits occurs up to moderate traffic volumes (< 20,000 AADT) whereas barn owls and hedgehogs occurred up to higher traffic volumes (40,000 AADT). Perception of risk may explain differences in responses towards high traffic highway segments. Road-kill rates did not vary significantly when traffic intensity departed from the average. In summary, we did not find evidence of traffic thresholds for the analysed species and traffic intensities. We suggest mitigation measures to reduce mortality be applied in particular on low traffic roads (< 5000 AADT) while additional measures to reduce barrier effects should take into account species-specific behavioural traits. - Highlights: • Traffic and road-kills were analysed along 1000 km of highways over seven years. • Mortality risk declined significantly with traffic volume. • Perception of risk may explain different responses towards high traffic sections. • Reducing barrier effects should take into account species behavioural traits.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2015

SU-E-I-13: Evaluation of Metal Artifact Reduction (MAR) Software On Computed Tomography (CT) Images

Purpose: A new commercially available metal artifact reduction (MAR) software in computed tomography (CT) imaging was evaluated with phantoms in the presence of metals. The goal was to assess the ability of the software to restore the CT number in the vicinity of the metals without impacting the image quality. Methods: A Catphan 504 was scanned with a GE Optima RT 580 CT scanner (GE Healthcare, Milwaukee, WI) and the images were reconstructed with and without the MAR software. Both datasets were analyzed with Image Owl QA software (Image Owl Inc, Greenwich, NY). CT number sensitometry, MTF, low contrast, uniformity, noise and spatial accuracy were compared for scans with and without MAR software. In addition, an in-house made phantom was scanned with and without a stainless steel insert at three different locations. The accuracy of the CT number and metal insert dimension were investigated as well. Results: Comparisons between scans with and without MAR algorithm on the Catphan phantom demonstrate similar results for image quality. However, noise was slightly higher for the MAR algorithm. Evaluation of the CT number at various locations of the in-house made phantom was also performed. The baseline HU, obtained from the scan without metal insert, was compared to scans with the stainless steel insert at 3 different locations. The HU difference between the baseline scan versus metal scan was improved when the MAR algorithm was applied. In addition, the physical diameter of the stainless steel rod was over-estimated by the MAR algorithm by 0.9 mm. Conclusion: This work indicates with the presence of metal in CT scans, the MAR algorithm is capable of providing a more accurate CT number without compromising the overall image quality. Future work will include the dosimetric impact on the MAR algorithm.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2017

A general model for retroviral capsid pattern recognition by TRIM5 proteins

Restriction factors are intrinsic cellular defense proteins that have evolved to block microbial infections. Retroviruses such as HIV-1 are restricted by TRIM5 proteins, which recognize the viral capsid shell that surrounds, organizes, and protects the viral genome. TRIM5α uses a SPRY domain to bind capsids with low intrinsic affinity ( K D >1 mM), and therefore requires higher-order assembly into a hexagonal lattice to generate sufficient avidity for productive capsid recognition. TRIMCyp, on the other hand, binds HIV-1 capsids through a cyclophilin A domain, which has a well-defined binding site and higher ( K D ~10 μM) affinity for isolated capsid subunits. It has therefore been argued that TRIMCyp proteins may have dispensed with the need for higher-order assembly to function as antiviral factors. Here, we show that, consistent with its high degree of sequence similarity with TRIM5α, the TRIMCyp B-box 2 domain shares the same ability to self-associate and facilitate assembly of a TRIMCyp hexagonal lattice that can wrap about the HIV-1 capsid. We also show that under stringent experimental conditions, TRIMCyp-mediated restriction of HIV-1 is indeed dependent on higher-order assembly. Both forms of TRIM5 therefore use the same mechanism of avidity-driven capsid pattern recognition. IMPORTANCE Rhesus macaques and owl monkeys are highly resistant to HIV-1 infection due to the activity of TRIM5 restriction factors. The rhesus macaque TRIM5α protein blocks HIV-1 through a mechanism that requires self-assembly of a hexagonal TRIM5α lattice around the invading viral core. Lattice assembly amplifies very weak interactions between the TRIM5α SPRY domain and the HIV-1 capsid. Assembly also promotes dimerization of the TRIM5α RING E3 ligase domain, resulting in synthesis of polyubiquitin chains that mediate downstream steps of restriction. In contrast to rhesus TRIM5α, the owl monkey TRIM5 homolog, TRIMCyp, binds isolated HIV-1 CA subunits more tightly through its cyclophilin A domain, and was therefore thought to act independent of higher-order assembly. Here, we show that TRIMCyp shares the assembly properties of TRIM5α and that both forms of TRIM5 use the same mechanism of hexagonal lattice formation to promote viral recognition and restriction.

Wagner, Jonathan M.↗

DOE OSTI2026

OptiMX

OptiMX is a GUI-oriented program with principal aim to be an easy to use, yet comprehensive, interactive accelerator optics design and analysis tool. It was originally developed starting in the 1990s as an MS Windows centric application using the commercial Borland OWL framework. In the spring of 2014, a decision was made to port OptiM to Qt, a modern, portable and open framework. As much as possible, the original interface was preserved.While a significant amount of refactoring was required, the underlying physics has been for the most, left unchanged. The custom plots of the original application have been replaced with functional equivalents based on a stable and well-established library (qwt). With very few minor exceptions the new refactored OptiMX should be a drop-in replacement for the original OWL version.

Lebedev, ValeriA. [Joint Inst. for Nuclear Researc↗

DOE OSTI2015

Supplementary Feeding, Plumage Documentation and Early Season Prey of Peregrine Falcons at the New Mexico Alpha Eyrie

A review of what is known about avian physiology and the biological effects of DDE suggests that some benefit to peregrine falcon egg condition could be attained by artificially feeding DDE free prey to the female from the time of her arrival on the nesting grounds until completion of egg laying; the magnitude of potential benefit is unknown. Sporadic efforts in the past demonstrated the need for precision methods of prey delivery. Two methods were developed and tried; providing dead prey items by dropping them in a day perch, and delivery of live prey by remotely controlled release from compartments positioned at the top of the cliff occupied by the falcons. Maintaining quail in the day perch for 21 days resulted in at least one and probably two meals for the female peregrine. Of 16 live birds released (mostly pigeons) 13 were pursued and three caught. Blinding the pigeons with tape proved to be necessary to enable capture. Also, some reluctance of the male peregrine to attack pigeons was observed, and problems with equipment, visibility, and the proximity of the falcons to the release box were encountered. Manpower was the most significant resource requirement. Baiting of great-horned owls, possibly leading to owl attack on the falcons, is judged to be the largest detrimental effect of supplemental feeding. It is recommended that supplemental feeding be reserved for falcons or eyries where complete reproductive failure is expected. Plumage documentation photography was successfully conducted by a remotely controlled camera as an aid to identification of individual falcons. American robin, red-winged blackbird, starling, white-throated swift, bluebird, and mourning dove were among natural prey consumed by the peregrines before completion of egg laying. All activities in close proximity to the cliff were conducted at night to preclude direct disturbance of the falcons.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Leveraging Machine Learning and Geo-Tagged Citizen Science Data to Disentangle the Factors of Avian Mortality Events at the Species Level

Abrupt environmental changes can affect the population structures of living species and cause habitat loss and fragmentations in the ecosystem. During August–October 2020, remarkably high mortality events of avian species were reported across the western and central United States, likely resulting from winter storms and wildfires. However, the differences of mortality events among various species responding to the abrupt environmental changes remain poorly understood. In this study, we focused on three species, Wilson’s Warbler, Barn Owl, and Common Murre, with the highest mortality events that had been recorded by citizen scientists. We leveraged the citizen science data and multiple remotely sensed earth observations and employed the ensemble random forest models to disentangle the species responses to winter storm and wildfire. We found that the mortality events of Wilson’s Warbler were primarily impacted by early winter storms, with more deaths identified in areas with a higher average daily snow cover. The Barn Owl’s mortalities were more identified in places with severe wildfire-induced air pollution. Both winter storms and wildfire had relatively mild effects on the mortality of Common Murre, which might be more related to anomalously warm water. Our findings highlight the species-specific responses to environmental changes, which can provide significant insights into the resilience of ecosystems to environmental change and avian conservations. Additionally, the study emphasized the efficiency and effectiveness of monitoring large-scale abrupt environmental changes and conservation using remotely sensed and citizen science data.

47 OTHER INSTRUMENTATION↗

NASA NTRS1971

Sleep in the nocturnal primate, Aotus trivirgatus.

Measurement of the cycles of wakefulness and stages of sleep in owl monkeys during 24-hr periods divided into half dark and half light segments. Recordings of electrophysiological activity were used. Reversal of the sequence of light and dark served to test the influence of environmental lighting on the sleep-wakefulness cycles. The sleep patterns of owl monkeys expressed in percentage of rapid eye movement (REM) and nonrapid eye movement (NREM) were compared with those of a closely related New World monkey species, Saimiri Sciureus.

Perachio, A. A.↗

NASA NTRS1976

Experiment to Evaluate the Feasibility of Utilizing Skylab-EREP Remote Sensing Data for Tectonic Analysis Through a Study of the Big Horn Mountain Region, Wyoming, South Dakota and Wyoming

The author has identified the following significant results. S190B imagery was the best single product from which fairly detailed structural and some lithologic mapping could be accomplished in the Big Horn basin, the Owl Creek Mountains, and the northern Big Horn Mountains. The Nye-Bowler lineament could not be extended east of its presently mapped location although a linear (fault or monocline) was noted that may be part of the lineament, but north of postulated extensions. Much more structure was discernible in the Big Horn basin than could be seen on LANDSAT-1 imagery; RB-57 color IR photography, in turn, revealed additional folds and faults. A number of linears, several of which could be identified as faults and one a monocline, cut obliquely the east-west trending Owl Creek uplift. The heavy forest cover of the Black Hills makes direct lithologic delineation impossible. However, drainage and linear overlays revealed differences in pattern between the areas of exposed Precambrian crystalline core and the flanking Paleozoic rocks. S192 data, even precision corrected segments, were not of much use.

Hoppin, R. A.↗

NASA NTRS1985

Personal-Computer Video-Terminal Emulator

OWL-1200 video terminal emulator has been written for IBM Personal Computer. The OWL-1200 is a simple user terminal with some intelligent capabilities. These capabilities include screen formatting and block transmission of data. Emulator is written in PASCAL and Assembler for the IBM Personal Computer operating under DOS 1.1.

Buckley, R. H.↗

NASA NTRS1989

A Mars/phobos Transportation System

A transportation system will be necessary to support construction and operation of bases on Phobos and Mars beginning in the year 2020 or later. An approach to defining a network of vehicles and the types of vehicles which may be used in the system are presented. The network will provide a convenient, integrated means for transporting robotically constructed bases to Phobos and Mars. All the technology needed for the current plan is expected to be available for use at the projected date of cargo departure from the Earth system. The modular design of the transportation system provides easily implemented contingency plans, so that difficulties with any one vehicle will have a minimal effect on the progress of the total mission. The transportation network proposed consists of orbital vehicles and atmospheric entry vehicles. Initially, only orbital vehicles will participate in the robotic construction phase of the Phobos base. The Interplanetary Transfer Vehicle (ITV) will carry the base and construction equipment to Phobos where the Orbital Maneuvering Vehicles (OMV's) will participate in the initial construction of the base. When the Mars base is ready to be sent, one or more ITV's will be used to transport the atmospheric entry vehicles from Earth. These atmospheric vehicles are the One Way Landers (OWL's) and the Ascent/Descent Vehicles (ADV's). They will be used to carry the base components and/or construction equipment. The OMV's and the Orbital Transfer Vehicles (OTV's) will assist in carrying the atmospheric entry vehicles to low Martian orbit where the OWL's or ADV's will descent to the planet surface. The ADV's were proposed to accommodate expansion of the system. Additionally, a smaller version of the ADV class is capable of transporting personnel between Mars and Phobos.

Source record↗

NASA NTRS2011

The Potential of Spaced-based High-Energy Neutrino Measurements via the Airshower Cherenkov Signal

Future space-based experiments, such as (Orbiting Wide-angle Light Collectors (OWL) and JEM-EUSO, view large atmospheric and terrestrial neutrino targets. With energy thresholds slightly above 10(exp 19) eV for observing airshowers via air fluorescence, the potential for observing the cosmogenic neutrino flux associated with the GZK effect is limited. However, the forward Cherenkov signal associated with the airshower can be observed at much lower energies. A simulation was developed to determine the Cherenkov signal strength and spatial extent at low-Earth orbit for upward-moving airshowers. A model of tau neutrino interactions in the Earth was employed to determine the event rate of interactions that yielded a tau lepton which would induce an upward-moving airshower observable by a space-based instrument. The effect of neutrino attenuation by the Earth forces the viewing of the Earth's limb to observe the vT-induced Cherenkov airshower signal at above the OWL Cherenkov energy threshold of approximately 10(exp 16.5) eV for limb-viewed events. Furthermore, the neutrino attenuation limits the effective terrestrial neutrino target area to approximately 3 x 10(exp 5) square km at 10(exp 17) eV, for an orbit of 1000 km and an instrumental full Field-of-View of 45 deg. This translates into an observable cosmogenic neutrino event rate of approx. l/year based upon two different models of the cosmogenic neutrino flux, assuming neutrino oscillations and a 10% duty cycle for observation.

Krizmanic, John F.↗

DOE OSTI2015

Dissecting the thermal Sunyaev-Zeldovich-gravitational lensing cross-correlation with hydrodynamical simulations

We use the cosmo-OWLS suite of cosmological hydrodynamical simulations, which includes different galactic feedback models, to predict the cross-correlation signal between weak gravitational lensing and the thermal Sunyaev-Zeldovich (tSZ) y-parameter. The predictions are compared to the recent detection reported by van Waerbeke and collaborators. The simulations reproduce the weak lensing-tSZ cross-correlation, ξ{sub yκ}(θ), well. The uncertainty arising from different possible feedback models appears to be important on small scales only (0θ ∼< 1 arcmin), while the amplitude of the correlation on all scales is sensitive to cosmological parameters that control the growth rate of structure (such as σ{sub 8}, Ω{sub m} and Ω{sub b}). This study confirms our previous claim (in Ma et al.) that a significant proportion of the signal originates from the diffuse gas component in low-mass (M{sub halo} ∼< 10{sup 14} M{sub ⊙}) clusters as well as from the region beyond the virial radius. We estimate that approximately 20% of the detected signal comes from low-mass clusters, which corresponds to about 30% of the baryon density of the Universe. The simulations also suggest that more than half of the baryons in the Universe are in the form of diffuse gas outside halos (∼> 5 times the virial radius) which is not hot or dense enough to produce a significant tSZ signal or be observed by X-ray experiments. Finally, we show that future high-resolution tSZ-lensing cross-correlation observations will serve as a powerful tool for discriminating between different galactic feedback models.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Solar soft cost ontology: a review of solar soft costs

The continued deployment of renewable energy is critical to the energy transition necessary for climate change mitigation. Since cost is one of the primary drivers of solar adoption, we must continue to reduce the cost of solar to hasten the transition to clean energy. Currently, solar soft costs account for 52%–70% of the cost of an installed residential solar photovoltaic (PV) system in the U.S. These costs are persistent and an increasing share of the costs, since hardware costs continue to decline. The consensus on a definition of soft costs is 'non-hardware costs', but defining something by what it is not does not tell us what it is, which makes it difficult to study and understand. To this end, we developed the solar soft cost ontology (SSCO) to provide a comprehensive view of the complex and variable knowledge domain of solar soft costs. In this work, we identify the main categories of solar soft costs, how they relate to each other, how that knowledge is created, shared, and acquired, and the relevant actors in the solar soft cost knowledge ecosystem. Developed by coding a corpus of nearly 130 academic articles, the resulting ontology in web ontology language (OWL) includes 136 classes and 87 properties. The SSCO can facilitate and enhance knowledge transfer of research findings and best practices within and between stakeholder communities, including researchers, practitioners, and policy makers, that seek to address solar soft costs. We conclude with a discussion of potential applications and use cases for the SSCO among this diverse stakeholder community.

14 SOLAR ENERGY↗

DOE OSTI2023

Mapping gas around massive galaxies: cross-correlation of DES Y3 galaxies and Compton- y maps from SPT and Planck

ABSTRACT We cross-correlate positions of galaxies measured in data from the first three years of the Dark Energy Survey with Compton-y maps generated using data from the South Pole Telescope (SPT) and the Planck mission. We model this cross-correlation measurement together with the galaxy autocorrelation to constrain the distribution of gas in the Universe. We measure the hydrostatic mass bias or, equivalently, the mean halo bias-weighted electron pressure 〈bhPe 〉, using large-scale information. We find 〈bhPe 〉 to be $[0.16^{+0.03}_{-0.04},0.28^{+0.04}_{-0.05},0.45^{+0.06}_{-0.10},0.54^{+0.08}_{-0.07},0.61^{+0.08}_{-0.06},0.63^{+0.07}_{-0.08}]$ meV cm−3 at redshifts z ∼ [0.30, 0.46, 0.62, 0.77, 0.89, 0.97]. These values are consistent with previous work where measurements exist in the redshift range. We also constrain the mean gas profile using small-scale information, enabled by the high-resolution of the SPT data. We compare our measurements to different parametrized profiles based on the cosmo-OWLS hydrodynamical simulations. We find that our data are consistent with the simulation that assumes an AGN heating temperature of 108.5 K but are incompatible with the model that assumes an AGN heating temperature of 108.0 K. These comparisons indicate that the data prefer a higher value of electron pressure than the simulations within r500c of the galaxies’ haloes.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Probing hot gas around luminous red galaxies through the Sunyaev–Zel’dovich effect

ABSTRACT We construct the mean thermal Sunyaev–Zel’dovich (tSZ) Comptonization y-profile around luminous red galaxies (LRGs) in the redshift range 0.16 < z < 0.47 from the Sloan Digital Sky Survey Data Release 7 using the Planck y-map. We detect a significant tSZ signal out to ∼30 arcmin, which is well beyond the 10 arcmin angular resolution of the y-map and well beyond the virial radii of the LRGs. We compare the measured profile with predictions from the cosmo-OWLS suite of cosmological hydrodynamical simulations. The best agreement is obtained for models that include efficient feedback from active galactic nuclei, over and above feedback associated with star formation. We also compare our results with predictions based on the halo model with a universal pressure profile giving the y-signal. The predicted profile is consistent with the data when using stacked weak lensing measurements to estimate the halo masses of the LRGs, but only if we account for the clustering of neighbouring haloes via a two-halo term.

Tanimura, Hideki↗

DOE OSTI2019

A Logical Model of Homology for Comparative Biology

There is a growing body of research on the evolution of anatomy in a wide variety of organisms. Discoveries in this field could be greatly accelerated by computational methods and resources that enable these findings to be compared across different studies and different organisms and linked with the genes responsible for anatomical modifications. Homology is a key concept in comparative anatomy; two important types are historical homology (the similarity of organisms due to common ancestry) and serial homology (the similarity of repeated structures within an organism). We explored how to most effectively represent historical and serial homology across anatomical structures to facilitate computational reasoning. We assembled a collection of homology assertions from the literature with a set of taxon phenotypes for the skeletal elements of vertebrate fins and limbs from the Phenoscape Knowledgebase. Using seven competency questions, we evaluated the reasoning ramifications of two logical models: the Reciprocal Existential Axioms (REA) homology model and the Ancestral Value Axioms (AVA) homology model. The AVA model returned all user-expected results in addition to the search term and any of its subclasses. The AVA model also returns any superclass of the query term in which a homology relationship has been asserted. The REA model returned the user-expected results for five out of seven queries. We identify some challenges of implementing complete homology queries due to limitations of OWL reasoning. This work lays the foundation for homology reasoning to be incorporated into other ontology-based tools, such as those that enable synthetic supermatrix construction and candidate gene discovery.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2014

SU-E-I-62: Assessing Radiation Dose Reduction and CT Image Optimization Through the Measurement and Analysis of the Detector Quantum Efficiency (DQE) of CT Images Using Different Beam Hardening Filters

Purpose: Reducing patient dose while maintaining (or even improving) image quality is one of the foremost goals in CT imaging. To this end, we consider the feasibility of optimizing CT scan protocols in conjunction with the application of different beam-hardening filtrations and assess this augmentation through noise-power spectrum (NPS) and detector quantum efficiency (DQE) analysis. Methods: American College of Radiology (ACR) and Catphan phantoms (The Phantom Laboratory) were scanned with a 64 slice CT scanner when additional filtration of thickness and composition (e.g., copper, nickel, tantalum, titanium, and tungsten) had been applied. A MATLAB-based code was employed to calculate the image of noise NPS. The Catphan Image Owl software suite was then used to compute the modulated transfer function (MTF) responses of the scanner. The DQE for each additional filter, including the inherent filtration, was then computed from these values. Finally, CT dose index (CTDIvol) values were obtained for each applied filtration through the use of a 100 mm pencil ionization chamber and CT dose phantom. Results: NPS, MTF, and DQE values were computed for each applied filtration and compared to the reference case of inherent beam-hardening filtration only. Results showed that the NPS values were reduced between 5 and 12% compared to inherent filtration case. Additionally, CTDIvol values were reduced between 15 and 27% depending on the composition of filtration applied. However, no noticeable changes in image contrast-to-noise ratios were noted. Conclusion: The reduction in the quanta noise section of the NPS profile found in this phantom-based study is encouraging. The reduction in both noise and dose through the application of beam-hardening filters is reflected in our phantom image quality. However, further investigation is needed to ascertain the applicability of this approach to reducing patient dose while maintaining diagnostically acceptable image qualities in a clinical setting.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗