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A computer aided treatment event recognition system in radiation therapy

Purpose: To develop an automated system to safeguard radiation therapy treatments by analyzing electronic treatment records and reporting treatment events. Methods: CATERS (Computer Aided Treatment Event Recognition System) was developed to detect treatment events by retrieving and analyzing electronic treatment records. CATERS is designed to make the treatment monitoring process more efficient by automating the search of the electronic record for possible deviations from physician's intention, such as logical inconsistencies as well as aberrant treatment parameters (e.g., beam energy, dose, table position, prescription change, treatment overrides, etc). Over a 5 month period (July 2012–November 2012), physicists were assisted by the CATERS software in conducting normal weekly chart checks with the aims of (a) determining the relative frequency of particular events in the authors’ clinic and (b) incorporating these checks into the CATERS. During this study period, 491 patients were treated at the University of Iowa Hospitals and Clinics for a total of 7692 fractions. Results: All treatment records from the 5 month analysis period were evaluated using all the checks incorporated into CATERS after the training period. About 553 events were detected as being exceptions, although none of them had significant dosimetric impact on patient treatments. These events included every known event type that was discovered during the trial period. A frequency analysis of the events showed that the top three types of detected events were couch position override (3.2%), extra cone beam imaging (1.85%), and significant couch position deviation (1.31%). The significant couch deviation is defined as the number of treatments where couch vertical exceeded two times standard deviation of all couch verticals, or couch lateral/longitudinal exceeded three times standard deviation of all couch laterals and longitudinals. On average, the application takes about 1 s per patient when executed on either a desktop computer or a mobile device. Conclusions: CATERS offers an effective tool to detect and report treatment events. Automation and rapid processing enables electronic record interrogation daily, alerting the medical physicist of deviations potentially days prior to performing weekly check. The output of CATERS could also be utilized as an important input to failure mode and effects analysis.

62 RADIOLOGY AND NUCLEAR MEDICINE↗

High Performance Computing Traffic Simulations for Real-Time Traffic Control of Mobility in Chattanooga Region

In 2019, highway congestion wasted over 3 billion gallons of fuel and caused 8.8 billion hours of lost productivity.1 Research has shown that introducing near-real time traffic controls can significantly reduce congestion. Validated and calibrated traffic simulations enable the modeling of transportation systems and the evaluation of different traffic control actions and schemes given a variety of circumstances that represent likely future scenarios. The developed scenarios can inform the deployment of controls in near real-time to improve freight and passenger vehicle congestion and energy use. In this work, we present simulations used to model the traffic in the Chattanooga, Tennessee, metropolitan area. Simulations were constructed and calibrated using a variety of local, data science enhanced, data sources utilizing open source software including the Simulation of Urban Mobility (SUMO) simulator. High-Performance Computing (HPC) provides a scalable platform with enough computing for the high-fidelity simulation of many scenarios and the application of advance data science especially for large-scale systems. Our simulations include microscopic simulations at a corridor level for traffic signal control, and mesoscopic simulations to evaluate regional operational controls and infrastructure.

97 MATHEMATICS AND COMPUTING↗

DICER: Data Intensive Computing Environment and Runtime for Evaluating Unprecedented Scale of Geospatial-Temporal Human Mobility Data

With the significant increase in sources and volume of human mobility data through commercial data vendors as well as microsimulation of cities, the scale of geospatial-temporal data to analyze and assess for mobility characterization has grown to the level of Big Data. There are mobility related commercial organizations deploying scalable computing, but often the system architecture, workflow, and intermediate processing components are not fully disclosed in relevant scope. Current research literature has a notable lack of studies demonstrating architectures and workflows for human mobility analytics that are implemented on a TeraByte scale of geospatial-temporal data. In this context, this paper presents a hyperscale-level system solution named DICER (Data Intensive Computing Environment and Runtime) for processing and analytics of geospatial-temporal data at big data scale. Although the cluster computing architecture of DICER with Apache Spark job running on Kubernetes cluster is not new, there are innovations in the workflow, hierarchical processing logic, and a wide range of intermediate preprocessing and mobility metrics calculation. We have performed case studies to validate the effectiveness of DICER system solution by performing detailed analytics and assessment of human mobility microsimulation output at three different scopes and scale, including a usecase with 16.97 TeraByte and 259.2 Billion rows of data. In addition, we have presented another case study of utilizing DICER to perform the same mobility processing and comparative analytics on large-scale commercially available geospatial-temporal data. All these case studies validate the efficiency and usefulness of DICER in computing population mobility characteristics from geospatial-temporal trajectory data at an unprecedented scale (not only just data volume, but also combination of: number of user entities, temporal frequency, spatial resolution, data duration).

De, Debraj↗

Ab initio electron mobility and polar phonon scattering in GaAs

In polar semiconductors and oxides, the long-range nature of the electron-phonon (e- ph) interaction is a bottleneck to compute charge transport from first principles. In this work, we develop an efficient ab initio scheme to compute and converge the e- ph relaxation times (RTs) and electron mobility in polar materials. We apply our approach to GaAs, where by using the Boltzmann equation with state-dependent RTs, we compute mobilities in excellent agreement with experiment at 250 – 500 K . The e- ph RTs and the phonon contributions to intravalley and intervalley e- ph scattering are also analyzed. Our work enables efficient ab initio computations of transport and carrier dynamics in polar materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Fractionated changes in prostate cancer radiotherapy using cone-beam computed tomography

The high mobility of the bladder and the rectum causes uncertainty in radiation doses prescribed to patients with prostate cancer who undergo radiotherapy (RT) multifraction treatments. The purpose of this study was to estimate the dose received by the bladder, rectum, and prostate from multifraction treatments using daily cone-beam computed tomography (CBCT). Overall, 28 patients with prostate cancer who planned to receive radiation treatments were enrolled in the study. The acquired CBCT before the treatment delivery was registered with the planning CT to map the dose distribution used in the treatment plan for estimating the received dose during clinical treatment. For all 28 patients with 112 data sets, the mean percentage differences (± standard deviation) in the volume and radiation dose were 44% (± 41) and 18% (± 17) for the bladder, 20% (± 21) and 2% (± 2) for the prostate, and 36% (± 29) and 22% (± 15) for the rectum, respectively. Substantial differences between the volumes and radiation dose and those specified in treatment plans were observed. Besides the use of image-guided RT to improve patient setup accuracy, further consideration of large changes in bladder and rectum volumes is strongly suggested when using external beam radiation for prostate cancer.

61 RADIATION PROTECTION AND DOSIMETRY↗

FY2019 Energy Efficient Mobility Systems Annual Progress Report

EEMS Program activities during FY 2019 focused on analytical research to understand the impacts that new mobility technologies and services will have at the vehicle, traveler, and overall transportation system-level. This research included the development of vehicle and transportation system simulation models and tools to evaluate the complex interactions among the various actors within the mobility landscape, analysis of empirical data to characterize which solutions may provide the largest benefits, and development of new control systems and algorithms that use vehicle connectivity and automation to improve the performance and efficiency of individual vehicles as well as the overall traffic system. This document presents a brief overview of the EEMS Program and documents progress and results for projects within four of the five EEMS activity areas: (1) the SMART (Systems and Modeling for Accelerated Research in Transportation) Mobility Lab Consortium, (2) High Performance Computing and Big Data Solutions for Mobility Data, (3) Advanced R&D Projects conducted by industry and academia, and (4) Core Modeling, Simulation, and Evaluation, Similarly, the remaining EEMS activity area – (5) Living Labs (managed under VTO’s Technology Integration Program). Each of the individual progress reports provide a project overview and highlights of the technical results.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Energy Efficient Mobility Systems 2018 Annual Progress Report

Energy Efficient Mobility Systems (EEMS) Program activities during FY 2018 focused on analytical research to understand the impacts that new mobility technologies and services will have at the vehicle, traveler, and overall transportation system-level. This research included the development of vehicle and transportation system simulation models and tools to evaluate the complex interactions among the various actors within the mobility landscape, analysis of empirical data to characterize which solutions may provide the largest benefits, and development of new control systems and algorithms that use vehicle connectivity and automation to improve the performance and efficiency of individual vehicles as well as the overall traffic system This document presents a brief overview of the EEMS Program and documents progress and results for projects within four of the five EEMS activity areas: (1) the SMART (Systems and Modeling for Accelerated Research in Transportation) Mobility Lab Consortium, (2) High Performance Computing and Big Data Solutions for Mobility Data, (3) Advanced R&D Projects conducted by industry and academia, and (4) Core Modeling, Simulation, and Evaluation, Similarly, the remaining EEMS activity area – (5) Living Labs (managed under VTO’s Technology Integration Program). Each of the individual progress reports provide a project overview and highlights of the technical results.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

High-Temperature Mobility of Tungsten Grain Boundaries

The objective of this study is to assess the effect of hydrogen isotopes on mechanical properties of tungsten relevant to first-wall applications in a tokamak. We report progress on calculation of the mobility of tungsten grain boundaries at high temperature, a key property in the process of recrystallization. In prior work we studied tungsten grain boundary properties such as the energies of boundaries with various orientations and misorientations, including energies of grain boundary phases that differ in structure from those at low temperature. We have calculated properties associated with the grain boundary mobility including the response of grain boundaries to applied shear stress. Here we report direct calculation of the motion of curved grain boundaries at high temperature using molecular dynamics. We compute how the mobility increases with temperature and how the mobility depends on the grain boundary misorientation. These calculations form baseline data to calculate the change when hydrogen or other defects are present.

36 MATERIALS SCIENCE↗

Logic circuit prototypes for three-terminal magnetic tunnel junctions with mobile domain walls

Spintronic computing promises superior energy efficiency and nonvolatility compared to conventional field-effect transistor logic. But, it has proven difficult to realize spintronic circuits with a versatile, scalable device design that is adaptable to emerging material physics. Here we present prototypes of a logic device that encode information in the position of a magnetic domain wall in a ferromagnetic wire. We show that a single three-terminal device can perform inverter and buffer operations. We demonstrate one device can drive two subsequent gates and logic propagation in a circuit of three inverters. This prototype demonstration shows that magnetic domain wall logic devices have the necessary characteristics for future computing, including nonlinearity, gain, cascadability, and room temperature operation.

42 ENGINEERING↗

Runtime Systems for Energy Efficiency in Advanced Computing Systems

As heterogeneous systems become increasingly popular for both mobile and high-performance computing, conventional efficiency techniques such as dynamic voltage and frequency scaling (DVFS) fail to account for the tightly coupled and varied nature of systems on a chip (SoCs). In this work, we explore the impact of system unaware DVFS techniques on a mobile SoC under three benchmark suites: Chai, Rodinia, and Antutu. We then analyze performance trends across the suites to identify a set of consistent operating points that optimally balance power and performance across the system. The consistent operating points are then constructed into a dependency graph which can be leveraged to produce a more effective, SoC-wide governor.

97 MATHEMATICS AND COMPUTING↗

Quantitative Collision Cross-Sections from FTICR Linewidth Measurements: Improvements in Theory and Experiment

Two corrections to the equation used in the cross-sectional areas by Fourier transform ion cyclotron resonance (“CRAFTI”) technique are identified. In CRAFTI, ion collision cross-sections are obtained from the pressure-dependent ion linewidths in Fourier transform mass spectra. The effects of these corrections on the accuracy of the cross-sections obtained using the CRAFTI technique are evaluated experimentally using the 20 biogenic amino acids and several crown ether complexes with protonated alkyl monoamines. Good absolute agreement is obtained between the CRAFTI cross-sections and the corresponding cross-sections obtained using both static drift ion mobility spectrometry and computational simulations. These results indicate that the CRAFTI cross-sections obtained using the updated equation presented here are quantitatively descriptive of the size and shape of the gas-phase ions. Cross-sections that differ by less than 3% are measured for the isobaric isomers n-butylamine and tert-butylamine complexed with the crown ethers. This level of precision is similar to what has been achieved previously using traveling wave ion mobility devices. These results indicate that CRAFTI can be used to probe subtle structural differences between ions with approximately the same precision as that achieved in traveling wave ion mobility devices. .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Transient solute drag and strain aging of dislocations

The transient drag force exerted by mobile solutes on a moving dislocation is computed using continuum theory. These mobile solutes form so-called Cottrell atmospheres around dislocations during static and dynamic strain aging. We evaluate the evolution of the drag force exerted by the atmosphere under two velocity time-histories: impulsive acceleration to a chosen velocity and a constant acceleration rate. A particular focus is on the conditions under which the stationary limit assumed by theories of dynamic strain aging is obeyed. According to our results, two conditions—one on the dislocation velocity and one on the acceleration rate—must be satisfied for the stationary limit to hold. Using the Orowan relation and a line tension model, we obtain estimates for the temperature, stress, strain rate, and dislocation density regimes where the stationary limit is valid, and compare these results with experiments for a few material systems.

36 MATERIALS SCIENCE↗

An Augmented 3D iPad Mobile Application for Communication, Collaboration, and Learning (CCL) of Building MEP Systems

The goal of this research is to gain better understanding of how BIM models can be used to create mobile 3D game environments for some serious purpose other than entertainment. This project was motivated by the perspective that the capability of BIM creating realistic 3D virtual game environments for collaboration, communication and learning (CCL). The wide dissemination of mobile devices is driving many computer applications toward the direction of ubiquitous mobile accessibility. Considering the popularity of the iPad mobile device, a BIM model of an institutional building was created for this 3D mobile game application on iPad. This game application allows users to visualize and interact with the HVAC BIM components. In this paper, we reported our preliminary findings in developing a BIM-based iPad 3D game application for CCL activities in architecture, engineering, and construction (AEC). Technical barriers of using BIM models to create mobile 3D CCL applications were also discussed. The detailed system architecture and implementation framework were presented in this paper. Differences between the developed program and the existing BIM mobile programs were elaborated to distinguish the developed program from the off-the-shelf BIM mobile programs, such as Vella and Autodesk Inventor mobile viewer. The preliminary results indicated that fairly complex BIM models including multiple building systems can be imported and created through 3D virtual-built environments to conducted CCL activities in the AEC domain.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

A new method for increasing accuracy of distance measurement based on single visual camera

Camera has been widely used in computer vision and mobile robotics applications because the sensor provides complementary information. However, the chief drawback of camera is that it only can provide 2D image information without depth information. There are lots of people studying the distance measurement with single visual camera, however it is difficult to achieve high precision. Usually we use two cameras to form stereo image and measure distance. Obviously it is complex. In this paper, we study the reason why distance measurement with single camera can hardly achieve high precision and propose a new method for improving the accuracy. We evaluate the proposed method and compare with existing methods to demonstrate the efficiency and high precision.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Calibration of a single-point laser range finder and a camera

Laser and visual imagery have been broadly utilized in computer vision and mobile robotics applications because these sensors provide complementary information. Since the single-point laser range finder can provide depth information of a single pixel in the observed image, its price and size is very suitable for handheld devices or very lightweight robotic platforms. So the combination of a single-point laser range finder and a camera has become increasingly useful in recent report and industrial applications. In this paper, we propose two accurate calibration methods for determining the position and direction of the laser range finder relative to the camera. Furthermore, we can accomplish calibration even without observing the laser spot in camera image. We evaluate the two methods through experiments which demonstrate their efficiency and high reliability.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Decomposition of ammonia on ZrB 2 (0001)

Zirconium diboride has been recently identified as a promising substrate for the growth of Group-III nitride semiconductors using reactive vapors that include ammonia as the nitrogen source. Adsorption energies and dissociation pathways of NH 3 on the (0001) surface of ZrB 2 were investigated using density functional theory calculations. Here, our results indicate that NH 3 readily adsorbs onto the ZrB 2 surface terminated with Zr and decomposes to atomic N and H with relatively small activation barriers. The resulting atomic species are found to be mobile with the computed diffusion barriers between 0.11 and 0.78 eV.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Charge Movement and Structural Changes in the Gas-Phase Unfolding of Multimeric Protein Complexes Captured by Native Top-Down Mass Spectrometry

The extent to which noncovalent protein complexes retain native structure in the gas phase is highly dependent on experimental conditions. Energetic collisions with background gas can cause structural changes ranging from unfolding to subunit dissociation. Additionally, recent studies have highlighted the role of charge in such structural changes, but the mechanism is not completely understood. In this study, native top down (native TD) mass spectrometry was used to probe gas-phase structural changes of alcohol dehydrogenase (ADH, 4mer) under varying degrees of in-source activation. Changes in covalent backbone fragments produced by electron capture dissociation (ECD) or 193 nm ultraviolet photodissociation (UVPD) were correlated to structural changes of the ADH 4mer. ECD fragments indicated unfolding started at the N-terminus, and the charge states of UVPD fragments enabled monitoring of charge migration to the unfolded regions. Interestingly, UVPD fragments also indicated that the charge at the “unfolding” N-terminus of ADH decreased at high in-source activation energies after the initial increase. We proposed a possible “refolding-after-unfolding” mechanism, as further supported by monitoring hydrogen elimination from radical a-ions produced by UVPD at the N-terminus of ADH. However, “refolding-after-unfolding” with increasing in-source activation was not observed for charge-reduced ADH, which likely adopted compact structures that are resistant to both charge migration and unfolding. Combined, these results support a charge-directed unfolding mechanism for protein complexes. Overall, an experimental framework was outlined for utilizing native TD to generate structure-informative mass spectral signatures for protein complexes that complement other structure characterization techniques, such as ion mobility spectrometry and computational modeling.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗