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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Space Flown Rodent Liver RNA Sequencing Data for Machine Learning in Space Biology Research

High-throughput nucleic acid sequencing (DNA-seq, RNA-seq) has become widespread in biomedical research due to the growing availability and affordability of these assays. Data analysis has been accelerated in recent years by the adoption of artificial intelligence (AI) and machine learning (ML) techniques by biomedical researchers. In space biology research, RNAseq datasets from space-flown experimental samples are critical for characterizing the gene expression aberrations associated with exposure to spaceflight stressors. However, space biological experiments tend to be very low sample size, so identifying proper AI/ML algorithms for sequencing data analysis is an ongoing challenge since these algorithms typically require large sample size. The NASA Science Mission Directorate (SMD) has started the “Benchmark Initiative for AI/ML”, focused on creating datasets meant for three main applications: 1) scientific benchmarking, which finds the best algorithm for a specific problem; 2) application benchmarking, which measures algorithm performance against a set of parameters; and 3) system benchmarking, which evaluates performance of hardware and software architecture. These scientific benchmarks consist of an AI-ready dataset and a reference implementation on a specific scientific question. In this work, we focused on generating standardized datasets to allow the scientific community to benchmark AI/ML algorithms in the domain of space biology. We present here a standardized, AI-ready, publicly available benchmark dataset for space biology RNA-seq data as a collaboration between the NASA AI4LS (Artificial Intelligence for Life Sciences) working group. and NASA’s SMD. This dataset consists of space-flown and ground control mouse liver found in the NASA GeneLab omics database. However, to amplify the small sample number (n=112 samples) for ML purposes, we employ Gaussian noise and a generative adversarial network to extend this dataset to 6,000 synthetic samples, matching the original gene expression characteristics.

James Casaletto↗
NASA NTRS2022

Multi-Mission Terrain Classifier for Safe Rover Navigation and Automated Science

We previously presented Soil Property and Object Classification (SPOC), a machine learning-based terrain classifier for Mars rovers, for automatically segmenting rover images by its surface type such as sand and bedrock. This paper presents a number of practical improvements to pave the way for potential future onboard deployment. First, we achieved 97.0% overall pixel accuracy, evaluated against the classification generated by human experts on images from Mars Science Laboratory (MSL) missions. The substantial increase in accuracy was primarily enabled by the sheer volume of data used for training; we created a new large-scale dataset of Martian terrain labels, namely AI4Mars, which contains more than 400k labels contributed by citizen scientists for 50k images taken by the Mars Exploration Rovers (MER) and Mars Science Laboratory (MSL) rover. Second, we demonstrated that SPOC can quickly adapt to a new mission landed on a previously unseen site. Specifically, we pretrained a model with MER and MSL data from the AI4Mars dataset and then adapted to the Mars 2020 Rover (M2020) by feeding a small volume of data between Sol 0 and 157; the adapted model was tested on Sol 200-203 and resulted in 84.2% overall pixel accuracy and 93.4% reliability (recall) for detecting sand, the most concerning class for rover’s traversability. Third, we found that pretraining can substantially mitigate the decline of accuracy over time. We showed that the performance of a SPOC model pretrained with the ImageNet dataset and then trained by MSL images only up to Sol 390 remains comparable to a model trained by images up to Sol 1689 on the test data after Sol 1689. Fourth, we reimplemented SPOC with a light-weight convolutional neural network (CNN), MobileNetV2, which typically runs within tens of milliseconds (ms) on mobile processors such as Qualcomm’s Snapdragon. Finally, we released the AI4Mars dataset to the public to encourage open innovation.

Ono, Masahiro↗
NASA NTRSDate not supplied

Enabling Interoperability in Earth System Digital Twins (ESDT): Integrating Observations, Models, and AI for Actionable Insights Through NASA'S Intelligent Systems Technology Program

NASA’s Intelligent Systems Technology Program (IST) is driving a paradigm shift in Earth science through the development of Earth System Digital Twins (ESDT). These integrated information systems create a dynamic "digital replica" of the Earth by harmonizing continuous, multi-source observations with high-fidelity models and state-of-the-art artificial intelligence (AI) that enable “What now?”, “What next?”, and “What if?” scenario building. These scenarios are reflected in NASA IST’s series of ESDTs, from the Coastal Zone Digital Twin that integrates complex data on the current state of the Chesapeake Bay to the Terrestrial Environmental Rapid-Replication and Assimilation Hydrometeorological (TerraHydro) AI-based ESDT that forecasts water movement across Earth’s surface, to the Agriculture Land Information System (AgLIS) which can be used to assess optimal planting dates and crop yield estimates. By bridging the gap between vast data archives and actionable insights, these projects enable a system-of-systems approach to understanding complex, interacting Earth processes. This poster will highlight recent innovations and future directions from NASA’s ESDT initiatives: Continuous Data Assimilation & Multi-Source Fusion. A core requirement of the ESDT work is the transition from static models to dynamic "living" replicas. This involves creating frameworks for the continual assimilation of near-real-time data from uncoordinated, heterogeneous sources, including satellite observations and airborne assets, and ground-based Internet of Things (IoT) sensors. These systems link design, operational status, and environmental data, ensuring the digital twin accurately reflects the current state of the physical Earth system. High-Fidelity Hybrid Modeling & Computational Acceleration to enable interactive "what-if" explorations, programs are moving beyond traditional, slow physical solvers by developing fast surrogate machine learning models and Deep Generative Models (DGMs). These hybrid approaches use neural networks to emulate complex physics, such as cloud feedback or ocean dynamics, at a fraction of the original computing cost, often leveraging advanced hardware like Graphics Processing Units (GPUs) to achieve the necessary scale. Federated Ecosystems & Interoperable Frameworks rather than building isolated tools, NASA IST is moving toward federated ESDTs and reusable analytic collaborative frameworks. This theme focuses on interoperability standards and common ontologies that allow specialized digital twins to interact and share data. This system-of-systems architecture supports multi-discipline investigations, such as analyzing how upstream watershed changes impact downstream urban flooding or how wildfire emissions affect regional air quality. By leveraging these advancements, ESDTs empower researchers and decision-makers to conduct real-time analysis and run complex hypothetical scenarios, ultimately improving our understanding of Earth’s evolving systems and informing critical real-world applications.

Earth System↗
NASA NTRSDate not supplied

Super-Resolution from Space: Using MERRA-2 and MAIAC Satellite Imagery to Produce Daily Continuous 1 km PM2.5 Estimates

PM2.5 measurements from ground stations are the gold standard when available, but the expense and coverage of such stations limits widespread monitoring. Having accurate PM2.5 estimates outside the range of these stations is important for monitoring this crucial aspect of air quality. The goal of this project is to produce daily 1 km continuous PM2.5 estimates for the contiguous US relying primarily on satellite-derived data sources. This is important because models based on such data can be more easily expanded outside the study area and produce global estimates as well. The temporal availability of such data products is often weekly/daily, unlike land-use products with are often available at a yearly or worse temporal resolution. To achieve our goal, we use a couple of different deep neural network architectures to produce PM2.5 measurements at 10 km and 1 km resolution. We use two model architectures, a UNET-like model and a GAN-based model. We train both models using MERRA-2 data and MAIAC AOD data scaled to 10 km and 1 km for the two different prediction resolutions. MERRA-2 imagery is data rich with a wide range of geospatial variables at 50 km and has long historical availability (beginning in 1980). We’re also using higher spatial resolution MAIAC data at 1 km to provide finer resolution spatial context. This essentially leverages the spatial resolution of MAIAC data and the “wider” information of MERRA-2 data to predict PM2.5. For the target data we’re using a modeled 1 km PM2.5 dataset produced by Harvard to pre-train our models and then fine-tune our models using ground station measurements. Not only are our results comparable with the performance of the Harvard dataset, but can be generalized to any area or time where MERRA-2 and MAIAC data is available.

satellite imagery↗
NASA NTRSDate not supplied

FluxSat: Long-term Earth Science Data Record (ESDR) for Terrestrial Gross Primary Production (GPP) based on satellite data calibrated with eddy covariance data

Gross primary production (GPP), the amount of carbon dioxide (CO 2 ) assimilated by plants through photosynthesis, is one of the most variable and uncertain components of the global carbon cycle. Global GPP has been estimated with a number of process-based models, data-driven, and hybrid approaches. Dynamic global vegetation models (DGVMs), driven by observed environmental changes, are used for global carbon budget assessments and long-term (climate) prediction. Benchmarking these and other models globally with data-driven GPP estimates is critical for understanding the land sink and ensuring accurate forecasts of the carbon cycle. In addition, global data-driven GPP estimates are crucial for studies of interannual variability, including trends that are linked to mechanisms with large uncertainties, such as the indirect CO 2 fertilization effect related to greening. In response to a community need for a GPP data set that well captures spatio-temporal variability, we developed FluxSat, a data-driven approach that optimizes the use of satellite reflectance data from the NASA MODerate-resolution Imaging Spectroradiometer (MODIS) on the Terra and Aqua satellites, calibrated using ground-based eddy covariance (EC) data. We are enhancing (spatially, higher resolution) and extending FluxSat (in time, with additional sensors) to create a high quality long term GPP Earth System Data Record (ESDR) for use in model benchmarking, carbon cycle modeling, and studies of trends and interannual variability. Our team’s objectives are to: 1. Update and document the current MODIS FluxSat GPP (daily, 0.05o and 0.5o resolutions) products with latest available MODIS and EC data sets; 2. Extend FluxSat GPP record forward in time with the Visible Infrared Imaging Radiometer Suite (VIIRS) on operational weather satellites going forward; 3. Extend FluxSat GPP record backward in time using the Advanced Very High Resolution Radiometer (AVHRR) on weather satellites dating back to 1981; 4. Provide higher spatial resolution MODIS and VIIRS GPP (0.0083o). 5. Thoroughly evaluate all FluxSat products with independent data; and 6. Create a homogenized long-term GPP record spanning 40+ years. We will discuss plans for this long-term data set that is supported through the NASA Making Earth System Data Records for Use in Research Environments (MEaSUREs) program.

gross Primary Production↗