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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
NASA NTRS2011

Enterprise Reference Library

Introduction: Johnson Space Center (JSC) offers two extensive libraries that contain journals, research literature and electronic resources. Searching capabilities are available to those individuals residing onsite or through a librarian s search. Many individuals have rich collections of references, but no mechanisms to share reference libraries across researchers, projects, or directorates exist. Likewise, information regarding which references are provided to which individuals is not available, resulting in duplicate requests, redundant labor costs and associated copying fees. In addition, this tends to limit collaboration between colleagues and promotes the establishment of individual, unshared silos of information The Integrated Medical Model (IMM) team has utilized a centralized reference management tool during the development, test, and operational phases of this project. The Enterprise Reference Library project expands the capabilities developed for IMM to address the above issues and enhance collaboration across JSC. Method: After significant market analysis for a multi-user reference management tool, no available commercial tool was found to meet this need, so a software program was built around a commercial tool, Reference Manager 12 by The Thomson Corporation. A use case approach guided the requirements development phase. The premise of the design is that individuals use their own reference management software and export to SharePoint when their library is incorporated into the Enterprise Reference Library. This results in a searchable user-specific library application. An accompanying share folder will warehouse the electronic full-text articles, which allows the global user community to access full -text articles. Discussion: An enterprise reference library solution can provide a multidisciplinary collection of full text articles. This approach improves efficiency in obtaining and storing reference material while greatly reducing labor, purchasing and duplication costs. Most importantly, increasing collaboration across research groups provides unprecedented access to information relevant to NASA s mission. Conclusion: This project is an expansion and cost-effective leveraging of the existing JSC centralized library. Adding key word and author search capabilities and an alert function for notifications about new articles, based on users profiles, represent examples of future enhancements.

Bickham, Grandin↗
DOE OSTI2019

Constructing a Tandem Mass Spectral Library for Forensic Ricin Identification

Ricin, a protein found in castor seeds, is a lethal toxin that is designated as a category 2 select agent. Because castor seeds are easy to obtain and the toxin can be easily extracted, cases of attempted ricin poisoning are relatively common. A shotgun proteomics method for ricin identification has recently been developed (manuscript in preparation), in which ricin peptides are identified by liquid chromatography-tandem mass spectrometry (LC-MS/MS) followed by proteomics database search, and peptide-spectrum matches are verified and compared to standard spectra by a human expert. To make this process more reproducible, objective, and high-throughput, we have created a ricin spectral library for peptide identification to supplement the human review step. To construct these spectral libraries, two pure ricin samples (from a proposed standard reference material) and crude castor seed extracts were digested with trypsin and analyzed using a standard shotgun LC-MS/MS protocol. Spectral libraries were created from the filtered search results from four database search tools. The library was then used in a search using SpectraST on samples from castor seeds. Analysis showed that the spectral library search resulted in more peptides identified from crude castor seed samples compared to MS-GF+ and Sequest plus Percolator. These results suggest that computational comparison of putative ricin peptide spectra to library spectra can be an effective method of confirming the presence of ricin, and that spectral library search may be suitable to augment the more manual and subjective aspects of the currently recommended human expert review.

Spectral Library, Ricin, forensic, proteomic↗
DOE OSTI2016

SU-G-BRB-02: An Open-Source Software Analysis Library for Linear Accelerator Quality Assurance

Purpose: Routine linac quality assurance (QA) tests have become complex enough to require automation of most test analyses. A new data analysis software library was built that allows physicists to automate routine linear accelerator quality assurance tests. The package is open source, code tested, and benchmarked. Methods: Images and data were generated on a TrueBeam linac for the following routine QA tests: VMAT, starshot, CBCT, machine logs, Winston Lutz, and picket fence. The analysis library was built using the general programming language Python. Each test was analyzed with the library algorithms and compared to manual measurements taken at the time of acquisition. Results: VMAT QA results agreed within 0.1% between the library and manual measurements. Machine logs (dynalogs & trajectory logs) were successfully parsed; mechanical axis positions were verified for accuracy and MLC fluence agreed well with EPID measurements. CBCT QA measurements were within 10 HU and 0.2mm where applicable. Winston Lutz isocenter size measurements were within 0.2mm of TrueBeam’s Machine Performance Check. Starshot analysis was within 0.2mm of the Winston Lutz results for the same conditions. Picket fence images with and without a known error showed that the library was capable of detecting MLC offsets within 0.02mm. Conclusion: A new routine QA software library has been benchmarked and is available for use by the community. The library is open-source and extensible for use in larger systems.

43 PARTICLE ACCELERATORS↗
DOE OSTI2017

The Extended IRTF Spectral Library: Expanded Coverage in Metallicity, Temperature, and Surface Gravity

We present a 0.7–2.5 μm spectral library of 284 stars observed with the medium-resolution infrared spectrograph, SpeX, at the 3.0 m NASA Infrared Telescope Facility (IRTF) on Maunakea, Hawaii. This library extends the metallicity range of the IRTF Cool Star library beyond solar metallicity to −1.7 < [Fe/H] < 0.6. All of the observed stars are also in the MILES optical stellar library, providing continuous spectral coverage for each star from 0.35 to 2.5 μm. The spectra are absolute flux calibrated using Two Micron All Sky Survey photometry, and the continuum shape of the spectra is preserved during the data reduction process. Synthesized JHK {sub S} colors agree with observed colors at the 1%–2% level, on average. We also present a spectral interpolator that uses the library to create a data-driven model of spectra as a function of T{sub eff}, log g, and [Fe/H]. We use the library and interpolator to compare empirical trends with theoretical predictions of spectral feature behavior as a function of stellar parameters. These comparisons extend to the previously difficult to access low-metallicity and cool dwarf regimes, as well as the previously poorly sampled super-solar metallicity regime. The library and interpolator are publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

IAEA Photonuclear Data Library 2019

Here, photo-induced reaction cross section data are of importance for a variety of current or emerging applications, such as radiation shielding design and radiation transport analyses, calculations of absorbed dose in the human body during radiotherapy, physics and technology of fission reactors (influence of photo-reactions on neutron balance) and fusion reactors (plasma diagnostics and shielding), activation analyses, safeguards and inspection technologies, nuclear waste transmutation, medical isotope production and astrophysical applications. To address these data needs the IAEA Photonuclear Data library was produced in 1999, containing evaluated photo-induced cross sections and neutron spectra for 164 nuclides which were deemed relevant for the applications. Since the release of the IAEA Photonuclear Data Library however, new experimental data as well as new methods to assess the reliability of experimental cross sections have become available. Theoretical models and input parameters used to evaluate photo-induced reactions have improved significantly over the years. In addition, new measurements of partial photoneutron cross sections using mono-energetic photon beams and advanced neutron detection systems have been performed allowing for the validation of the evaluations and assessments of the experimental data. Furthermore, technological advances have led to the construction of new and more powerful gamma-beam facilities, therefore new data needs are emerging. We report our coordinated efforts to address these data needs and present the results of the new up-to-date evaluations included in the new updated IAEA Photonuclear Data Library consisting of 219 nuclides. The new library includes 188 new evaluations produced by the CRP evaluators, and one evaluation taken from the JENDL/PD-2016 library, while 20 evaluations were retained from the previous 1999 IAEA Photonuclear Data Library. In most of the cases, the photon energy goes up to 200 MeV. A total of 55 nuclides are new in this library reflecting the progress in measurements but also the developing data needs. In this paper we discuss the new assessment method and make recommendations to the user community in cases where the experimental data are discrepant and the assessments disagree. In addition, in the absence of experimental data, we present model predictions for photo-induced reaction cross section on nuclides of potential interest to medical radioisotope production.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2023

A comprehensive spectral assay library to quantify the Halobacterium salinarum NRC-1 proteome by DIA/SWATH-MS

Data-Independent Acquisition (DIA) is a mass spectrometry-based method to reliably identify and reproducibly quantify large fractions of a target proteome. The peptide-centric data analysis strategy employed in DIA requires a priori generated spectral assay libraries. Such assay libraries allow to extract quantitative data in a targeted approach and have been generated for human, mouse, zebrafish, E. coli and few other organisms. However, a spectral assay library for the extreme halophilic archaeon Halobacterium salinarum NRC-1, a model organism that contributed to several notable discoveries, is not publicly available yet. Here, we report a comprehensive spectral assay library to measure 2,563 of 2,646 annotated H. salinarum NRC-1 proteins. We demonstrate the utility of this library by measuring global protein abundances over time under standard growth conditions. The H. salinarum NRC-1 library includes 21,074 distinct peptides representing 97% of the predicted proteome and provides a new, valuable resource to confidently measure and quantify any protein of this archaeon. Data and spectral assay libraries are available via ProteomeXchange (PXD042770, PXD042774) and SWATHAtlas (SAL00312-SAL00319).

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Dimensionality Reduction Library v 0.2

Dimensionality Reduction Library is a C++ library for dimensionality reduction. In the context of this library, dimensionality reduction is considered to consist of 1)estimation of the intrinsic dimensionality using sampled data, 2) Finding maps that reduce the dimensionality of data (forward map) or increase the dimensionality of data (reverse map) and 3) mapping arbitray coordinates to high and low dimensionalities. The library is intended to provide a consistent interface to multiple dimensionality reduction algorithms with an efficient C++ interface that runs efficiently on multicore architectures. A few routines have been optimized with an option for GPU acceleration or distributed computation. Currently the library offers intrinsic dimensionality estimation using point-PCA reconstruction error and/ residual variance. The following dimensionality reduction methods have been implemented: Principal Component Analysis Multidimensional Scaling Locally Linear Embedding IsoMap Autoencoder Neutral Networks An executable is also supplied that can be built to allow for command-line access to the library routines. A description for an application of the library for molecular structure analysis has been published.

BROWN, WILLIAM↗
DOE OSTI2018

SCALE MG Cross Section Processing for High Void BWR Using the AMPX 1,597-group Library

The CASL VERA neutronic simulator MPACT has been developed by Oak Ridge National Laboratory (ORNL) and University of Michigan for the pressurized water reactor applications. The MPACT capability is being extended for the boiling water reactor (BWR) analysis. Recent investigation showed that the MPACT multigroup (MG) library has limitations for high void BWR fuels because of the very coarse group structure. Since the MPACT MG library is generated with the AMPX/SCALE code package developed at ORNL, enhancement of the AMPX/SCALE code package and its MG library must be preceded to improve the accuracy of the MPACT MG library. Therefore, a new 1597-group structure was developed and an AMPX 1597-group library was generated. This ultra-fine group (UFG) library resulted in significant improvements in accuracy for fast spectrum systems compared to the AMPX 252-group results. However, the use of the AMPX 1597-group library requires significantly increased burden on memory and computing time.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗
DOE OSTI2024

Benchmarking of ENDF/B-VIII.1 Thermal Scattering Library for Hydrogen

In correctly characterizing the energy and momentum transfer at thermal and cold energies between neutrons and its interacting medium, thermal scattering libraries, which details energy states due to the intra- and inter-molecular bond effects for the medium materials, are applied in place of free-gas cross section libraries in a particle transport simulation code. They are essential to the neutron performance of a neutron facility like SNS, where thermalized neutrons from 20 K liquid hydrogen and ambient (~300 K) water are transported to the beamlines for neutron scattering experiments in studying materials. Recently, a new version of thermal scattering library for parahydrogen and orthohydrogen at 14-20 K was developed and to be released in ENDF/B-VIII.1. It is, therefore, important to benchmark its impacts on the prediction of moderator performance due to the updates in the thermal scattering library. In this study, the recent ENDF/B-VIII.1 thermal scattering library was compared to the current ENDF/B-VII.1 one in the neutron performance calculations for the decoupled and coupled hydrogen moderators at SNS under theorized and real working conditions. In addition, the predictions using both thermal scattering libraries were benchmarked to the measurements of moderator performance. The consistency between the libraries was observed mostly for parahydrogen and the difference in orthohydrogen at cold neutron energies was noted.

Lu, Wei↗
DOE OSTI2023

Selecting Minimal Motion Primitive Libraries with Genetic Algorithms

Motion primitives allow for application of discrete search algorithms to rapidly produce trajectories in complex continuous space. The maneuver automaton (MA) provides an elegant formulation for creating a primitive library based on trims and maneuvers. However, performance is fundamentally limited by the contents of the primitive library. If the library is too sparse, performance can be poor in terms of path cost, whereas a library that is too large can increase run time. This work outlines new methods for using genetic algorithms to prune a primitive library. The proposed methods balance the path cost and planning time while maintaining the reachability of the MA. The genetic algorithm in this paper evaluates and mutates populations of motion primitive libraries to optimize both objectives. Here, we illustrate the performance of these methods with a simulated study using a nonlinear medium-fidelity F-16 model. We optimize a library with the presented algorithm for obstacle-free navigation and a nap-of-the-Earth navigation task. In the obstacle-free navigation task, we show a tradeoff of a 10.16% higher planning cost for a 96.63% improvement in run time. In the nap-of-the-Earth task, we show a tradeoff of a 9.712% higher planning cost for a 92.06% improvement in run time.

42 ENGINEERING↗
NASA NTRS1972

Automatic computer subprogram selection from application program libraries

The program ALTLIB (ALTernate LIBrary) which allows a user access to an alternate subprogram library with a minimum effort is discussed. The ALTLIB program selects subprograms from an alternate library file and merges them with the user's program load file. Only subprograms that are called for (directly or indirectly) by the user's programs and that are available on the alternate library file will be selected. ALTLIB eliminates the need for elaborate control-card manipulations to add subprograms from a subprogram file. ALTLIB returns to the user his binary file and the selected subprograms in correct order for a call to the loader. The user supplies the alternate library file. Subprogram requests which are not satisfied from the alternate library file will be satisfied at load time from the system library.

Drozdowski, J. M.↗
NASA NTRS1993

The Visible Human Project of the National Library of Medicine: Remote access and distribution of a multi-gigabyte data set

As part of the 1986 Long-Range Plan for the National Library of Medicine (NLM), the Planning Panel on Medical Education wrote that NLM should '...thoroughly and systematically investigate the technical requirements for and feasibility of instituting a biomedical images library.' The panel noted the increasing use of images in clinical practice and biomedical research. An image library would complement NLM's existing bibliographic and factual database services and would ideally be available through the same computer networks as are these current NLM services. Early in 1989, NLM's Board of Regents convened an ad hoc planning panel to explore possible roles for the NLM in the area of electronic image libraries. In its report to the Board of Regents, the NLM Planning Panel on Electronic Image Libraries recommended that 'NLM should undertake a first project building a digital image library of volumetric data representing a complete, normal adult male and female. This Visible Human Project will include digitized photographic images for cryosectioning, digital images derived from computerized tomography, and digital magnetic resonance images of cadavers.' The technologies needed to support digital high resolution image libraries, including rapid development; and that NLM encourage investigator-initiated research into methods for representing and linking spatial and textual information, structural informatics. The first part of the Visible Human Project is the acquisition of cross-sectional CT and MRI digital images and cross-sectional cryosectional photographic images of a representative male and female cadaver at an average of one millimeter intervals. The corresponding cross-sections in each of the three modalities are to be registerable with one another.

Ackerman, Michael J.↗
NASA NTRS1999

Smart Objects, Dumb Archives: A User-Centric, Layered Digital Library Framework

Currently, there exist a large number of superb digital libraries, all of which are, unfortunately, vertically integrated and all presenting a monolithic interface to their users. Ideally, a user would want to locate resources from a variety of digital libraries dealing only with one interface. A number of approaches exist to this interoperability issue exist including: defining a universal protocol for all libraries to adhere to; or developing mechanisms to translate between protocols. The approach we illustrate in this paper is to push down the level of universal protocols to one for digital object communication and for communication for simple archives. This approach creates the opportunity for digital library service providers to create digital libraries tailored to the needs of user communities drawing from available archives and individual publishers who adhere to this standard. We have created a reference implementation based on the hyper text transfer protocol (http) with the protocols being derived from the Dienst protocol. We have created a special class of digital objects called buckets and a number of archives based on a NASA collection and NSF funded projects. Starting from NCSTRL we have developed a set of digital library services called NCSTRL+ and have created digital libraries for researchers, educators and students that can each draw on all the archives and individually created buckets.

Maly, Kurt↗
NASA NTRS2010

Planetary Image Geometry Library

The Planetary Image Geometry (PIG) library is a multi-mission library used for projecting images (EDRs, or Experiment Data Records) and managing their geometry for in-situ missions. A collection of models describes cameras and their articulation, allowing application programs such as mosaickers, terrain generators, and pointing correction tools to be written in a multi-mission manner, without any knowledge of parameters specific to the supported missions. Camera model objects allow transformation of image coordinates to and from view vectors in XYZ space. Pointing models, specific to each mission, describe how to orient the camera models based on telemetry or other information. Surface models describe the surface in general terms. Coordinate system objects manage the various coordinate systems involved in most missions. File objects manage access to metadata (labels, including telemetry information) in the input EDRs and RDRs (Reduced Data Records). Label models manage metadata information in output files. Site objects keep track of different locations where the spacecraft might be at a given time. Radiometry models allow correction of radiometry for an image. Mission objects contain basic mission parameters. Pointing adjustment ("nav") files allow pointing to be corrected. The object-oriented structure (C++) makes it easy to subclass just the pieces of the library that are truly mission-specific. Typically, this involves just the pointing model and coordinate systems, and parts of the file model. Once the library was developed (initially for Mars Polar Lander, MPL), adding new missions ranged from two days to a few months, resulting in significant cost savings as compared to rewriting all the application programs for each mission. Currently supported missions include Mars Pathfinder (MPF), MPL, Mars Exploration Rover (MER), Phoenix, and Mars Science Lab (MSL). Applications based on this library create the majority of operational image RDRs for those missions. A Java wrapper around the library allows parts of it to be used from Java code (via a native JNI interface). Future conversions of all or part of the library to Java are contemplated.

Deen, Robert C.↗
DOE OSTI2014

Development and Testing of Nuclear Data Libraries for Improved Energy Deposition Modeling - Paper 144

Accurate calculations of local energy deposition rates require the presence of gamma production data (GPD) in the nuclear data library used by radiation transport codes such as MCNP5, MONACO, or Denovo. The lack of GPD in the underlying nuclear data library can cause significant over-prediction of local heat generation rates with a corresponding under-prediction of heat generation rates away from a region of interest. To address this concern, continuous energy (CE) and multigroup (MG) cross section libraries with additional GPD have been created. Both ACE- and AMPX-formatted CE libraries, as well as ANISN- and AMPX-formatted MG libraries, have been created and are undergoing verification and validation (V and V) testing. A hybrid data set consisting of cross-section evaluations from five different nuclear data repositories has been developed. This hybrid data set, referred to as GPD-Rev0, is intended to support enhanced energy deposition calculations. Code-specific libraries in CE ACE, CE AMPX, MG AMPX, and MG ANISN formats have been created from the GPD-Rev0 data set. V and V testing has demonstrated that these various code-specific libraries are performing well for the intended applications. Localized over- and under-predictions of HFIR heating rates have been addressed without adversely affecting the prediction of other key operating parameters. (authors)

61 RADIATION PROTECTION AND DOSIMETRY↗
DOE OSTI2017

Extending a Tandem Mass Spectral Library to Include MS{sup 2} Spectra of Fragment Ions Produced In-Source and MS{sup n} Spectra

Tandem mass spectral library searching is finding increased use as an effective means of determining chemical identity in mass spectrometry-based omics studies. We previously reported on constructing a tandem mass spectral library that includes spectra for multiple precursor ions for each analyte. Here we report our method for expanding this library to include MS{sup 2} spectra of fragment ions generated during the ionization process (in-source fragment ions) as well as MS{sup 3} and MS{sup 4} spectra. These can assist the chemical identification process. A simple density-based clustering algorithm was used to cluster all significant precursor ions from MS{sup 1} scans for an analyte acquired during an infusion experiment. The MS{sup 2} spectra associated with these precursor ions were grouped into the same precursor clusters. Subsequently, a new top-down hierarchical divisive clustering algorithm was developed for clustering the spectra from fragmentation of ions in each precursor cluster, including the MS{sup 2} spectra of the original precursors and of the in-source fragments as well as the MS{sup n} spectra. This algorithm starts with all the spectra of one precursor in one cluster and then separates them into sub-clusters of similar spectra based on the fragment patterns. Herein, we describe the algorithms and spectral evaluation methods for extending the library. The new library features were demonstrated by searching the high resolution spectra of E. coli extracts against the extended library, allowing identification of compounds and their in-source fragment ions in a manner that was not possible before. .

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2016

Library based x-ray scatter correction for dedicated cone beam breast CT

Purpose: The image quality of dedicated cone beam breast CT (CBBCT) is limited by substantial scatter contamination, resulting in cupping artifacts and contrast-loss in reconstructed images. Such effects obscure the visibility of soft-tissue lesions and calcifications, which hinders breast cancer detection and diagnosis. In this work, we propose a library-based software approach to suppress scatter on CBBCT images with high efficiency, accuracy, and reliability. Methods: The authors precompute a scatter library on simplified breast models with different sizes using the GEANT4-based Monte Carlo (MC) toolkit. The breast is approximated as a semiellipsoid with homogeneous glandular/adipose tissue mixture. For scatter correction on real clinical data, the authors estimate the breast size from a first-pass breast CT reconstruction and then select the corresponding scatter distribution from the library. The selected scatter distribution from simplified breast models is spatially translated to match the projection data from the clinical scan and is subtracted from the measured projection for effective scatter correction. The method performance was evaluated using 15 sets of patient data, with a wide range of breast sizes representing about 95% of general population. Spatial nonuniformity (SNU) and contrast to signal deviation ratio (CDR) were used as metrics for evaluation. Results: Since the time-consuming MC simulation for library generation is precomputed, the authors’ method efficiently corrects for scatter with minimal processing time. Furthermore, the authors find that a scatter library on a simple breast model with only one input parameter, i.e., the breast diameter, sufficiently guarantees improvements in SNU and CDR. For the 15 clinical datasets, the authors’ method reduces the average SNU from 7.14% to 2.47% in coronal views and from 10.14% to 3.02% in sagittal views. On average, the CDR is improved by a factor of 1.49 in coronal views and 2.12 in sagittal views. Conclusions: The library-based scatter correction does not require increase in radiation dose or hardware modifications, and it improves over the existing methods on implementation simplicity and computational efficiency. As demonstrated through patient studies, the authors’ approach is effective and stable, and is therefore clinically attractive for CBBCT imaging.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2025

Solar Energy Demonstration Project for Public Libraries

In this project, the South Hero Library Foundation purchased and installed a 39.95 kW DC roof-mounted solar array on the south-facing roof of the Worthen Library as well as on the south-facing roof of the neighboring 54 Community Lane building. This 94 panel array has a projected output of 39,950 kWh of power which will cover the Library’s annual power usage for heat and lighting. Any power overage will be distributed to other local organizations as designated by the Library. Library programming and added resources will be available to all patrons.

14 SOLAR ENERGY↗