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At least 73 records · Page 4

Dispersion-correcting potentials can significantly improve the bond dissociation enthalpies and noncovalent binding energies predicted by density-functional theory

Dispersion-correcting potentials (DCPs) are atom-centered Gaussian functions that are applied in a manner that is similar to effective core potentials. Previous work on DCPs has focussed on their use as a simple means of improving the ability of conventional density-functional theory methods to predict the binding energies of noncovalently bonded molecular dimers. We show in this work that DCPs developed for use with the LC-ωPBE functional along with 6-31+G(2d,2p) basis sets are capable of simultaneously improving predicted noncovalent binding energies of van der Waals dimer complexes and covalent bond dissociation enthalpies in molecules. Specifically, the DCPs developed herein for the C, H, N, and O atoms provide binding energies for a set of 66 noncovalently bonded molecular dimers (the “S66” set) with a mean absolute error (MAE) of 0.21 kcal/mol, which represents an improvement of more than a factor of 10 over unadorned LC-ωPBE/6-31+G(2d,2p) and almost a factor of two improvement over LC-ωPBE/6-31+G(2d,2p) used in conjunction with the “D3” pairwise dispersion energy corrections. In addition, the DCPs reduce the MAE of calculated X-H and X-Y (X,Y = C, H, N, O) bond dissociation enthalpies for a set of 40 species from 3.2 kcal/mol obtained with unadorned LC-ωPBE/6-31+G(2d,2p) to 1.6 kcal/mol. Our findings demonstrate that broad improvements to the performance of DFT methods may be achievable through the use of DCPs.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Modeling solvation effects in real-space and real-time within density functional approaches

The Polarizable Continuum Model (PCM) can be used in conjunction with Density Functional Theory (DFT) and its time-dependent extension (TDDFT) to simulate the electronic and optical properties of molecules and nanoparticles immersed in a dielectric environment, typically liquid solvents. In this contribution, we develop a methodology to account for solvation effects in real-space (and real-time) (TD)DFT calculations. The boundary elements method is used to calculate the solvent reaction potential in terms of the apparent charges that spread over the van der Waals solute surface. In a real-space representation, this potential may exhibit a Coulomb singularity at grid points that are close to the cavity surface. We propose a simple approach to regularize such singularity by using a set of spherical Gaussian functions to distribute the apparent charges. We have implemented the proposed method in the OCTOPUS code and present results for the solvation free energies and solvatochromic shifts for a representative set of organic molecules in water.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Charge transport properties of poly(dA)-poly(dT) DNA in variation of backbone disorder and amplitude of base-pair twisting motion

By using tight binding Hamiltonian model, charge transport properties of poly(dA)-poly(dT) DNA in variation of backbone disorder and amplitude of base-pair twisting motion is studied. The DNA chain used is 32 base pairs long poly(dA)-poly(dT) molecule. The molecule is contacted to electrode at both ends. The influence of environment on charge transport in DNA is modeled as variation of backbone disorder. The twisting motion amplitude is taking into account by assuming that the twisting angle distributes following Gaussian distribution function with zero average and standard deviation proportional to square root of temperature and inversely proportional to the twisting motion frequency. The base-pair twisting motion influences both the onsite energy of the bases and electron hopping constant between bases. The charge transport properties are studied by calculating current using Landauer-Buttiker formula from transmission probabilities which is calculated by transfer matrix methods. The result shows that as the backbone disorder increases, the maximum current decreases. By decreasing the twisting motion frequency, the current increases rapidly at low voltage, but the current increases slower at higher voltage. The threshold voltage can increase or decrease with increasing backbone disorder and increasing twisting frequency.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

PREDOMINANTLY LOW METALLICITIES MEASURED IN A STRATIFIED SAMPLE OF LYMAN LIMIT SYSTEMS AT Z = 3.7

We measured metallicities for 33 z = 3.4–4.2 absorption line systems drawn from a sample of H i-selected-Lyman limit systems (LLSs) identified in Sloan Digital Sky Survey (SDSS) quasar spectra and stratified based on metal line features. We obtained higher-resolution spectra with the Keck Echellette Spectrograph and Imager, selecting targets according to our stratification scheme in an effort to fully sample the LLS population metallicity distribution. We established a plausible range of H i column densities and measured column densities (or limits) for ions of carbon, silicon, and aluminum, finding ionization-corrected metallicities or upper limits. Interestingly, our ionization models were better constrained with enhanced α -to-aluminum abundances, with a median abundance ratio of [ α /Al] = 0.3. Measured metallicities were generally low, ranging from [M/H] = −3 to −1.68, with even lower metallicities likely for some systems with upper limits. Using survival statistics to incorporate limits, we constructed the cumulative distribution function (CDF) for LLS metallicities. Recent models of galaxy evolution propose that galaxies replenish their gas from the low-metallicity intergalactic medium (IGM) via high-density H i “flows” and eject enriched interstellar gas via outflows. Thus, there has been some expectation that LLSs at the peak of cosmic star formation ( z ≈ 3) might have a bimodal metallicity distribution. We modeled our CDF as a mix of two Gaussian distributions, one reflecting the metallicity of the IGM and the other representative of the interstellar medium of star-forming galaxies. This bimodal distribution yielded a poor fit. A single Gaussian distribution better represented the sample with a low mean metallicity of [M/H] ≈ −2.5.

79 ASTRONOMY AND ASTROPHYSICS↗

Vibrationally resolved NEXAFS at C and N K-edges of pyridine, 2-fluoropyridine and 2,6-difluoropyridine: A combined experimental and theoretical assessment

In the present work, the near edge X-ray absorption spectroscopy (NEXAFS) spectra at both C and N K-edges of pyridine, 2-fluoropyridine, and 2,6-difluoropyridine have been studied both experimentally and theoretically. From an electronic point of view, both transition potential density functional theory and time-dependent density functional theory approaches lead to reliable results provided that suitable basis sets and density functionals are employed. In this connection, the global hybrid B3LYP functional in conjunction with the EPR-III basis set appears particularly suitable after constant scaling of the band positions. For the N K-edge, vertical energies obtained at these levels and broadened by symmetric Gaussian distributions provide spectra in reasonable agreement with the experiment. Vibronic contributions further modulate the band-shapes leading to a better agreement with the experimental results, but are not strictly necessary for semi-quantitative investigations. On the other hand, vibronic contributions are responsible for strong intensity redistribution in the NEXAFS C K-edge spectra, and their inclusion is thus mandatory for a proper description of experiments. In this connection, the simple vertical gradient model is particularly appealing in view of its sufficient reliability and low computational cost. For more quantitative results, the more refined vertical Hessian approach can be employed, and its effectiveness has been improved thanks to a new least-squares fitting approach.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Plasma Dispersion Function for the Kappa Distribution

The plasma dispersion function is computed for a homogeneous isotropic plasma in which the particle velocities are distributed according to a Kappa distribution. An ordinary differential equation is derived for the plasma dispersion function and it is shown that the solution can be written in terms of Gauss' hypergeometric function. Using the extensive theory of the hypergeometric function, various mathematical properties of the plasma dispersion function are derived including symmetry relations, series expansions, integral representations, and closed form expressions for integer and half-integer values of K.

Podesta, John J.↗

On electron bunching and stratification of glow discharges

Plasma stratification and excitation of ionization waves is one of the fundamental problems in gas discharge physics. Significant progress in this field is associated with the name of Lev Tsendin. He advocated the need for the kinetic approach to this problem contrary to the traditional hydrodynamic approach, introduced the idea of electron bunching in spatially periodic electric fields, and developed a theory of kinetic resonances for analysis of moving striations in rare gases. The present paper shows how Tsendin's ideas have been further developed and applied for understanding the nature of the well-known S-, P-, and R-striations observed in glow discharges of inert gases at low pressures and currents. We review numerical solutions of a Fokker-Planck kinetic equation in spatially periodic electric fields under the effects of elastic and inelastic collisions of electrons with atoms. We illustrate the formation of kinetic resonances at specific field periods for different shapes of injected Electron Distribution Functions (EDF). Computer simulations illustrate how self-organization of the EDFs occurs under nonlocal conditions and how Gaussian-like peaks moving along resonance trajectories are formed in a certain range of discharge conditions. The calculated EDFs agree well with the experimentally measured EDFs for the S, P, and R striations in noble gases. We discuss how kinetic resonances affect dispersion characteristics of moving striations and mention some non-linear effects associated with glow discharge stratification. We propose further studies of stratification phenomena combining physical kinetics and non-linear physics.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Schrödinger potentials solvable in terms of the general Heun functions

Highlights: •There are 35 Schrödinger potentials solvable in terms of the Heun functions. •Only 11 of the potentials are independent. •9 potentials have sub-potentials with solution via a single hypergeometric function. •Many subpotentials are solved through a combination of two hypergeometric functions. •A generalization of the third exactly solvable hypergeometric potential is presented. -- Abstract: We show that there exist 35 choices for the coordinate transformation each leading to a potential for which the stationary Schrödinger equation is exactly solvable in terms of the general Heun functions. Because of the symmetry of the Heun equation with respect to the transposition of its singularities only eleven of these potentials are independent. Four of these independent potentials are always explicitly written in terms of elementary functions, one potential is given through the Jacobi elliptic sn-function, and the others are in general defined parametrically. Nine of the independent potentials possess exactly or conditionally integrable hypergeometric sub-potentials for which each of the fundamental solutions of the Schrödinger equation is written through a single hypergeometric function. Many of the potentials possess sub-potentials for which the general solution is written through fundamental solutions each of which is a linear combination of two or more Gauss hypergeometric functions. We present an example of such a potential which is a conditionally integrable generalization of the third exactly solvable Gauss hypergeometric potential.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Gaussian kernel density functions for compositional quantification in atom probe tomography

Highlights: • A methodology for compositional quantification from atom probe tomography is proposed. • A probability density function p(x) given discrete data points is constructed. • Each atom approximated by a Gaussian function with a particular smoothing parameter. • Density Kernel functions are used to find the optimum smoothing parameter. • The method is validated by using simulated data of semiconductor materials. - Abstract: Atom probe tomography (APT) has the ability to identify the nature and position of single atoms in a material with an almost 3D atomic resolution. However, the quantification of the material composition requires an appropriate treatment of the discrete APT data. When the amount of atoms selected to quantify the composition is relatively small, the spatial resolution is enhanced but the statistical error worsens. Conversely, the increase in the number of atoms considered reduces the spatial resolution, but improving the statistics. We have developed a methodology to reach an optimum equilibrium between the positional and the statistical error in an unsupervised form using Gaussian Kernel density functions. The validity of the method has been tested using APT simulated data of semiconductor materials. It has been proved that the chemical quantification in these materials requires the appropriate selection of the smoothing parameter, obtained without user intervention. In addition, the results have been compared to the usual techniques for composition measurement from APT data (voxelization and proximity histograms), showing better precision for high spatial resolution. This work supplies a data driven methodology based in Gaussian Kernel density functions for the accurate quantification of the composition from APT data.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Direct non-Born-Oppenheimer variational calculations of all bound vibrational states corresponding to the first rotational excitation of D{sub 2} performed with explicitly correlated all-particle Gaussian functions

Direct variational calculations where the Born-Oppenheimer approximation is not assumed are done for all rovibrational states of the D{sub 2} molecule corresponding to first excited rotational level (the N = 1 states). All-particle explicitly correlated Gaussian basis functions are used in the calculations. The exponential parameters of the Gaussians are optimized with the aid of analytically calculated energy gradient determined with respect to these parameters. The results allow to determine the ortho-para spin isomerization energies as a function of the vibrational quantum number.

74 ATOMIC AND MOLECULAR PHYSICS↗

From plane waves to local Gaussians for the simulation of correlated periodic systems

Here, we present a simple, robust, and black-box approach to the implementation and use of local, periodic, atom-centered Gaussian basis functions within a plane wave code, in a computationally efficient manner. The procedure outlined is based on the representation of the Gaussians within a finite bandwidth by their underlying plane wave coefficients. The core region is handled within the projected augment wave framework, by pseudizing the Gaussian functions within a cutoff radius around each nucleus, smoothing the functions so that they are faithfully represented by a plane wave basis with only moderate kinetic energy cutoff. To mitigate the effects of the basis set superposition error and incompleteness at the mean-field level introduced by the Gaussian basis, we also propose a hybrid approach, whereby the complete occupied space is first converged within a large plane wave basis, and the Gaussian basis used to construct a complementary virtual space for the application of correlated methods. We demonstrate that these pseudized Gaussians yield compact and systematically improvable spaces with an accuracy comparable to their non-pseudized Gaussian counterparts. A key advantage of the described method is its ability to efficiently capture and describe electronic correlation effects of weakly bound and low-dimensional systems, where plane waves are not sufficiently compact or able to be truncated without unphysical artifacts. We investigate the accuracy of the pseudized Gaussians for the water dimer interaction, neon solid, and water adsorption on a LiH surface, at the level of second-order Møller–Plesset perturbation theory.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Electronic Excitation Energy Transfer in an Array of CdS Quantum Dots on a Quasi-Two-Dimensional Surface

The optical spectra of films composed of spherical silicon-dioxide particles coated with small-radius CdS quantum dots are recorded and analyzed. Large shifts of the absorption and photoluminescence bands are detected and studied in relation to the concentration of quantum dots and to the pumping density and wavelength. Analysis of the experimental data shows that the effects are due to electronic excitation energy transfer by particles through the mechanism of tunneling induced by a strong interaction between quantum dots. The results obtained at low pumping densities and different excitation wavelengths make it possible to describe the size distribution of CdS quantum dots. This distribution can be adequately approximated with a Gaussian function.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Quantum theory with an energy operator defined as a quartic form of the momentum

Quantum theory of the non-harmonic oscillator defined by the energy operator proposed by Yurke and Buks (2006) is presented. Although these authors considered a specific problem related to a model of transmission lines in a Kerr medium, our ambition is not to discuss the physical substantiation of their model. Instead, we consider the problem from an abstract, logically deductive, viewpoint. Using the Yurke–Buks energy operator, we focus attention on the imaginary-time propagator. We derive it as a functional of the Mehler kernel and, alternatively, as an exact series involving Hermite polynomials. For a statistical ensemble of identical oscillators defined by the Yurke–Buks energy operator, we calculate the partition function, average energy, free energy and entropy. Using the diagonal element of the canonical density matrix of this ensemble in the coordinate representation, we define a probability density, which appears to be a deformed Gaussian distribution. A peculiarity of this probability density is that it may reveal, when plotted as a function of the position variable, a shape with two peaks located symmetrically with respect to the central point.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

The non-Gaussian halo mass function with f{sub NL}, g{sub NL} and τ{sub NL}

Primordial non-Gaussianity has emerged as one of the most promising probes of the inflationary epoch. While the cosmic microwave background and large-scale halo bias currently provide the most stringent constraints on the non-Gaussian parameter f{sub NL}, the abundance of dark matter halos is a complementary probe which may allow tests of Gaussianity which are independent of the precise form of non-Gaussian initial conditions. We study the halo mass function in N-body simulations with a range of non-Gaussian initial conditions. In addition to the usual f{sub NL} model, we consider g{sub NL}Φ{sup 3}-type non-Gaussianity and models where the 4-point amplitude τ{sub NL} is an independent parameter. We introduce a new analytic form for the halo mass function in the presence of primordial non-Gaussianity, the ''log-Edgeworth'' mass function, and find good agreement with the N-body simulations. The log-Edgeworth mass function introduces no free parameters and can be constructed from first principles for any model of primordial non-Gaussianity.

79 ASTRONOMY AND ASTROPHYSICS↗

Development of TDLAS for Water Vapor Concentration Measurement during VHTR Steam Ingress

Very-high-temperature reactors (VHTR) utilize a graphite-moderated, helium-cooled design that provides higher efficiencies and a low-carbon source of process heat (>700 deg. C) for many industrial applications. Safety concerns have led to extensive accident condition investigations. Steam generator heat-exchanger tube rupture accidents (SGTR) can lead to increased reactor core steam density, which causes neutron slowing-down and chemical corrosion of the graphite fuel elements and structural columns. It is important to be able to computationally model the propagation of steam throughout the lower plenum and nuclear reactor core, but experimental data is needed to validate such models. The primary objective of this project is to instrument a scaled down experiment of a VHTR designed by Ohio State University (OSU), with tunable diode laser absorption spectroscopy (TDLAS) diagnostics to measure steam concentration changes and map how water vapor propagates through the test facility's lower plenum and core. The basic principle of absorption spectroscopy is based on a molecular species ability to absorb photons of specific energies. A collimated laser beam of known energy is passed through a test section containing a sample gas. When a transition of the absorbing gas species resonates with the laser frequency, a certain amount of energy will be absorbed based on the rovibrational characteristics of the molecule. The intensity of the transmitted laser light can be measured by a detector after exiting the test section. The Beer-Lambert Law of absorbance is used to recover this information relating beam attenuation to the system dimensions, gas composition, pressure, and temperature. The line-strength is a function of temperature alone and relates the fraction of molecules in a given rovibrational state through the partition function. The partition function describes the statistical properties of a system in thermodynamic equilibrium where the states obey a Boltzmann distribution. Thus, the number density of molecules in a particular state can be determined from the total internal partition function at a particular temperature. The lineshape function of a given absorption transition is derived from the physical interaction between the absorbing species and is dependent on temperature and pressure. Random thermal motion of absorbing molecules result in broadening of the linewidth, called Doppler broadening, which follows a Gaussian distribution. Molecular collisions result in broadening and shifting of the linewidth, called pressure broadening, which follows a Lorentzian distribution. The overall lineshape results in a Voigt profile, which is a convolution of the Gaussian and Lorentzian distributions. The Voigt profile does not have a simple analytical form and is most often calculated numerically or approximated by complex functions. (authors)

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

SU-C-304-01: Investigation of Various Detector Response Functions and Their Geometry Dependence in a Novel Method to Address Ion Chamber Volume Averaging Effect

Purpose: A novel convolution-based approach has been proposed to address ion chamber (IC) volume averaging effect (VAE) for the commissioning of commercial treatment planning systems (TPS). We investigate the use of various convolution kernels and its impact on the accuracy of beam models. Methods: Our approach simulates the VAE by iteratively convolving the calculated beam profiles with a detector response function (DRF) while optimizing the beam model. At convergence, the convolved profiles match the measured profiles, indicating the calculated profiles match the “true” beam profiles. To validate the approach, beam profiles of an Elekta LINAC were repeatedly collected with ICs of various volumes (CC04, CC13 and SNC 125) to obtain clinically acceptable beam models. The TPS-calculated profiles were convolved externally with the DRF of respective IC. The beam model parameters were reoptimized using Nelder-Mead method by forcing the convolved profiles to match the measured profiles. We evaluated three types of DRFs (Gaussian, Lorentzian, and parabolic) and the impact of kernel dependence on field geometry (depth and field size). The profiles calculated with beam models were compared with SNC EDGE diode-measured profiles. Results: The method was successfully implemented with Pinnacle Scripting and Matlab. The reoptimization converged in ∼10 minutes. For all tested ICs and DRFs, penumbra widths of the TPS-calculated profiles and diode-measured profiles were within 1.0 mm. Gaussian function had the best performance with mean penumbra width difference within 0.5 mm. The use of geometry dependent DRFs showed marginal improvement, reducing the penumbra width differences to less than 0.3 mm. Significant increase in IMRT QA passing rates was achieved with the optimized beam model. Conclusion: The proposed approach significantly improved the accuracy of the TPS beam model. Gaussian functions as the convolution kernel performed consistently better than Lorentzian and parabolic functions. Further improvement of using geometry-dependent kernels was marginal.

60 APPLIED LIFE SCIENCES↗

Efficient method of evaluation for Gaussian Hartree-Fock exchange operator for Gau-PBE functional

We previously developed an efficient screened hybrid functional called Gaussian-Perdew–Burke–Ernzerhof (Gau-PBE) [Song et al., J. Chem. Phys. 135, 071103 (2011)] for large molecules and extended systems, which is characterized by the usage of a Gaussian function as a modified Coulomb potential for the Hartree-Fock (HF) exchange. We found that the adoption of a Gaussian HF exchange operator considerably decreases the calculation time cost of periodic systems while improving the reproducibility of the bandgaps of semiconductors. We present a distance-based screening scheme here that is tailored for the Gaussian HF exchange integral that utilizes multipole expansion for the Gaussian two-electron integrals. We found a new multipole screening scheme helps to save the time cost for the HF exchange integration by efficiently decreasing the number of integrals of, specifically, the near field region without incurring substantial changes in total energy. In our assessment on the periodic systems of seven semiconductors, the Gau-PBE hybrid functional with a new screening scheme has 1.56 times the time cost of a pure functional while the previous Gau-PBE was 1.84 times and HSE06 was 3.34 times.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Inelastic p{sup 9}Be scattering and halo structure of the J{sup π} = 1/2{sup +} excited state of the {sup 9}Be nucleus

Differential cross sections for inelastic p{sup 9}Be scattering (to the J{sup α} = 1/2{sup +} level) were calculated on the basis of Glauber’s diffraction theory. The wave function for the {sup 9}Be nucleus in the three-particle 2αn model was used in this calculation. An expansion of this wave function in a series in Gaussian functions and the representation of the Glauber operator Ω in the form conjugate to the three-particle wave function make it possible to calculate analytically inelastic-scattering matrix elements. The differential cross section calculated by using the 2αn wave functions agrees well with available experimental data at E = 180 MeV.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗