Spectral deconvolution of redox species in the crotonyl-CoA-dependent NADH:ferredoxin oxidoreductase from Megasphaera elsdenii. A flavin-dependent bifurcating enzyme
Not Available
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
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Results for “Electron bifurcation”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Rapid-reaction kinetics of the bifurcating NAD+-dependent NADPH:ferredoxin oxidoreductase NfnI from Pyrococcus furiosus
Not Available
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Formation of Amorphous Carbon Multi‐Walled Nanotubes from Random Initial Configurations
Amorphous carbon nanotubes (a‐CNT) with up to four walls and sizes ranging from 200 to 3200 atoms have been simulated, starting from initial random configurations and using the Gaussian Approximation Potential. The important variables (like density, height, and diameter) required to successfully simulate a‐CNTs were predicted with the machine learning random forest technique. The width of the a‐CNT models ranged between 0.55–2 nm with an average inter‐wall spacing of 0.31 nm. The topological defects in a‐CNTs were analyzed and new defect configurations were observed. The electronic density of states and localization in these phases were discussed and delocalized electrons in the π subspace were identified as an important factor for inter‐layer cohesion. Spatial projection of the electronic conductivity favors axial transport along connecting hexagons, while non‐hexagonal parts of the network either hinder or bifurcate the electronic transport. A vibrational density of states was calculated and is potentially an experimentally comparable fingerprint of the material. The appearance of a low‐frequency radial breathing mode was discussed and the thermal conductivity at 300 K was estimated using the Green‐Kubo formula.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Experimental investigation of PDI bifurcation of lower hybrid waves during electron density ramp-up in EAST
Abstract The effect of parametric decay instability (PDI) on the current drive efficiency of 4.6 GHz lower hybrid (LH) waves in EAST is investigated experimentally, showing the PDI channel bifurcation of LH waves for the first time in EAST. First, experiments with three platforms of LH power were performed, achieving the LH power required for the PDI occurrence. Second, PDI bifurcation experiments were further carried out by ramping up the plasma electron density. The loop voltage increases with an increase in density, implying a decrease in the current driven by the LH wave. PDI bifurcation during electron density ramp-up was studied by analyzing the parallel refractive index ( n ∥ ) and the frequency spectrum broadening, which is measured with a radio frequency magnetic probe array recently installed close to the LH antenna. It is observed for the first time that they both first increase with density, then there is not much variation and a clear sideband in the frequency spectrum is also observed when the density is up to 4 × 10 19 m − 3 , suggesting a change in the PDI channel. Calculation of the mode growth rate driven by PDI shows that when the edge electron density is up to 1.9 × 10 18 m − 3 , the growth rate of the ion cyclotron quasi-mode (ICQM) will exceed that of the ion sound quasi-mode (ISQM), quantitively explaining that with an increase in density, the PDI channel partly transits from the ISQM to the ICQM channel. Studies provide a possible way to reduce the power deposition in the edge region and improve drive capability by means of mitigating PDI behavior.
Physics↗
Modeling the Effects of Drift Orbit Bifurcation on the Magnetopause Shadowing Loss of Radiation Belt Electrons
Abstract Last closed drift shell (LCDS) has been identified as a crucial parameter for investigating the magnetopause shadowing loss of radiation belt electrons. However, drift orbit bifurcation (DOB) effects have not been physically incorporated into the LCDS calculation. Here we calculate event‐specific LCDS using different approaches to dealing with the DOB effects, that is, tracing field lines ignoring DOB, tracing test particles rejecting field lines with DOB, and tracing particles including field lines with DOB, and then incorporate them into a radial diffusion model to simulate the fast electron dropout observed by Van Allen Probes in May 2017. The model effectively captures the fast dropout at high L* and exhibits the best agreement with data when LCDS is calculated by tracing test particles with DOB more physically included. This study represents the first quantitative modeling of the DOB effects on radiation belt magnetopause shadowing loss via a more physical specification of LCDS.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Functionally redundant formate dehydrogenases enable formate-dependent growth in Methanococcus maripaludis
Not Available
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Experimental signatures of electron cyclotron wave energy condensation in magnetic islands
Here, bifurcation of the electron temperature perturbation (ΔT e ) in magnetic islands due to electron cyclotron current drive (ECCD) is reported for the first time in toroidal plasmas. In this DIIID experiment ΔT e spontaneously increases by 50% in a growing 2,1 island which in turn rapidly shrinks, consistent with improved stabilization by the ECCD due to the temperature bifurcation. This non-linearity of ΔT e maps out a hysteresis in the island evolution cycle, in qualitative agreement with the theoretically predicted radio frequency current condensation effect. Therefore, this observed bifurcation can be critical for the avoidance of disruptions caused by tearing modes in tokamaks.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
The anaerobic fungus Caecomyces churrovis produces H 2 via a non-bifurcating NADH-dependent enzyme complex
ABSTRACT Hydrogenosomes are mitochondria-derived organelles that produce ATP and H 2 to support energy metabolism in anaerobic eukaryotes. H 2 production allows reoxidation of reduced cofactors generated during fermentative metabolism; however, the metabolic mechanisms for H 2 production in anaerobic eukaryotes remains incompletely understood. In particular, it remains unclear whether anaerobic fungi (AF) hydrogenosomes use a ferredoxin-dependent pathway or a distinct mechanism to regenerate NAD(P) + and link electron transfer to H 2 formation. Here, by combining genomic search, proteomic analysis, and enzymology, we reveal the molecular mechanism for H 2 production in the AF strain Caecomyces churrovis . Our enzyme assays on the organelle fraction of C. churrovis revealed the activity of H 2 :NAD + oxidoreductase but not pyruvate:ferredoxin oxidoreductase, which is usually linked to H 2 formation. We identified genes encoding [FeFe] hydrogenase (Hyd) and NADH dehydrogenase subunits E and F (NuoE, NuoF) in C. churrovis , and confirmed their expression in the isolated hydrogenosomal fractions by proteomic analysis. Combining the individually purified enzymes, we found Hyd and NuoEF proteins formed H 2 directly from NADH independently of ferredoxin, functioning as a non-bifurcating NADH-dependent enzyme rather than an electron-bifurcating enzyme. We identified homologs of hydrogenosomal NuoE, NuoF, and Hyd in many other AF, indicating this pathway is commonly shared among the AF. This work demonstrates the existence of a non-bifurcating NADH-dependent enzyme complex in eukaryotes. Moreover, this complex could potentially be exploited as a target for controlling AF H 2 production and altering fungal metabolism. IMPORTANCE H 2 production is a prominent feature of anaerobic energy metabolism, yet our understanding of eukaryotic mechanisms remains limited. Anaerobic fungi (AF) are key decomposers of lignocellulose and contribute to hydrogen flux in anaerobic environments. Although it has been more than 40 years since the H 2 production from AF was first reported, the molecular mechanism for hydrogenosomal H 2 production and redox balance remains unclear. We demonstrate that AF produce H 2 from NADH utilizing a non-bifurcating NADH-dependent enzyme complex rather than an electron-bifurcating, ferredoxin-dependent variant. We show that this enzyme complex is conserved across multiple AF lineages and thus demonstrate the occurrence of a non-bifurcating NADH-dependent enzyme in eukaryotes. This discovery expands our understanding of eukaryotic hydrogenosomal metabolism, reveals a previously unknown strategy for redox balancing, and highlights potential targets for manipulating H 2 production. These insights have broad implications for microbial energy metabolism, anaerobic ecosystems, and bioengineering of H 2 -producing systems.
Zhang, Bo [Department of Chemical Engineering, Uni↗
The influence of protein electrostatics on potential inversion in flavoproteins
Biology uses relatively few electron-transfer cofactors, tuning their potentials, electronic couplings, and reorganization energies to carry out the required chemistry. It is remarkable that the potential ordering of two-electron transfer active flavins can be normal (first oxidation at low potential and second oxidation at high potential) or inverted, and the gap between the potentials can be as large as one volt. Analysis based on structural bioinformatics and electrostatics indicates that the ordering of the flavin redox potential is influenced by protein electrostatics. In all 36 flavoproteins examined, the introduction of a negative charge near the flavin in silico increases the extent of potential inversion (by lowering the electrochemical potential of the second electron-transfer step); the introduction of a positive charge near the flavin favors normally ordered potentials. We also find that the addition of positive charges increases the electrochemical potential for the naturally occurring one-electron transition in flavodoxins (between deprotonated hydroquinone and neutral semiquinone) and also increases the second one-electron transition in bifurcating flavins (between anionic semiquinone and fully oxidized flavin). Finally, we find that proximity of a proton acceptor, notably conserved arginine, supports proton-coupled electron transfer because it may act as a proton acceptor, promoting potential inversion. This key arginine residue may enable two-electron transfer chemistry by promoting the proton-coupled electron transfer process over the pure electron transfer process, suggesting how a protein's flavin environment may influence one- or two-electron chemistry in flavoproteins.
Singh, Niven [Duke Univ., Durham, NC (United State↗
The Auger Radioisotope Microscope: an instrument for characterization of Auger electron multiplicities and energy distributions
We describe a new instrument, the Argonne Auger Radioisotope Microscope (ARM), capable of characterizing the Auger electron (AE) emission of radionuclides, including candidates relevant in nuclear medicine. Our approach relies on event-by-event ion–electron coincidence, time-of-flight, and spatial readout measurement to determine correlated electron multiplicity and energy distributions of Auger decays. We present a proof-of-principle measurement with the ARM using x-ray photoionization of stable krypton beyond the K-edge and identify a bifurcation in the electron multiplicity distribution depending on the emission of K-LX electrons. Extension of the ARM to the characterization of radioactive sources of AE emissions is enabled by the combination of two recent developments: (1) cryogenic buffer gas beam technology to introduce Auger emitters into the detection region with well-defined initial conditions, and (2) large-area micro-channel plate detectors with multi-hit detection capabilities to simultaneously detect multiple electrons emitted in a single decay.
Auger emitters↗
Electron ITB formation in EAST high poloidal beta plasmas under dominant electron heating
Abstract Plasma confinement and transport in tokamaks play a crucial role in the development of high poloidal beta steady-state operation scenarios. Therefore, it is very important to study the relevant mechanism of internal transport barriers (ITBs), which can help plasmas to obtain better confinement in order to achieve higher fusion gain. This paper mainly introduces the analysis of the characteristics of electron heat transport of discharges with ITB in high β P operation regime in Experimental Advanced Superconducting Tokamak (EAST). Based on the statistical analysis of stable discharges with β P > 1.5, it is found that there is an obvious bifurcation of the normalised electron temperature gradient (ETG) ( R / L T e ) in the range of β P = 2–2.2. Then the discharges of lower β P ( β P < 2, where the value of β P is below the bifurcation threshold) and of higher β P ( β P > 2.2, where the value of β P is above the threshold) were selected for analysis. The diagnostic data provided by Thomson scattering, x-ray crystal spectrometry and charge exchange recombination spectroscopy are used to provide reliable parameter profiles and then combined with the data of external magnetic probe measurements and the polarisation interferometer diagnosis system to fully reconstruct the balance. A relevant plasma current calculation model is used to calculate and analyse the current density profiles and power deposition, and then the transport analysis is carried out. Interestingly, in the higher β P discharges, it is found that the turbulence intensity provided by the CO 2 laser collective scattering system gradually decreases and the normalised ETG R / L T e gradually increases. It is also found that the electron heat transport coefficient decreases in the discharge with higher β P and the growth rate of the electron-scale turbulence calculated by transport gyro-Landau fluid (TGLF) is significantly reduced. Meanwhile, similar conclusions are also obtained in the discharges when the β P is further increased.
Wang, Z. H. (ORCID:0009000203431036)↗
Transport barrier and spinning blob dynamics in the tokamak edge
Abstract In this work, we investigate the dynamics of plasma blobs in the edge of magnetic confinement devices using a full-f gyrokinetic particle-in-cell code with X-point geometry. In simulations, the evolution of a seeded blob is followed as it approaches a naturally-forming zonal shear layer near the separatrix, where the blob is stabilized by a large spin induced by the self-consistent adiabatic electron response, and blob bifurcation and trapping are observed during the cross-field propagation of blobs. A new theoretical explanation in both the zonal free and zonal shear layer is constructed, where the dominant E × B spin motion is included. A theoretical condition for a transport barrier induced by the interaction between spinning blobs and the zonal shear layer is obtained, and its scaling is verified with simulations. The new theoretical framework, especially the transport barrier, is applicable to explain and predict various experimental phenomena. In particular, the transport barrier condition calculated with experimental parameters demonstrates that the blob radial transport for H mode is smaller than L mode in experiments.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Energetic Electron Transport in Magnetized Plasma with Magnetic Islands (Final Technical Report)
The main scientific goal of this project was to investigate the interactions between energetic electrons and magnetic islands in magnetized plasmas from lab to space. The proposed plan of addressed the following specific objectives: (1) Determine if energetic electrons are trapped by magnetic islands. Specifically, test the hypothesis that energetic electrons are trapped near island O-points due to stable orbits and de-confined near island X-points due to X-point tangles. (2) Determine how electron transport changes with island width and location. Specifically, test the hypothesis that electrons are accelerated by contracting magnetic islands through a Fermi acceleration process. (3) Assess how electron transport is affected by island dynamics, including island rotation, bifurcation, and/or island overlap. Specifically, test the hypothesis that electrons are deconfined and possibly accelerated during island rotations, bifurcations, and overlap due to stochastization of the magnetic field lines.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Recent advances in plasma control and physics research in the Large Helical Device
The Large Helical Device (LHD), the largest superconducting helical system in the world, is equipped with advanced heating and diagnostic tools, facilitating plasma control and physics research. Data assimilation was employed for electron temperature control using a real-time Thomson scattering system and real time prediction code. A virtual LHD environment enabled visualization of escaping high-energy tritium ions and demonstrated that these ions impact the rear side of the divertor plate. Pioneering results crucial to plasma control have also been achieved. Real-time wall conditioning using Lithium granule dropping improved bulk ion energy and particle transport while simultaneously enhancing the heavy impurity transport. Progress has also been made in the investigation of turbulence-driven transport. At the confinement bifurcation, ion-scale turbulence decreased, while electron-scale turbulence increased. A change in the anisotropy of turbulent eddies was also observed at the confinement bifurcation. Coexistence of local and non-local turbulence was identified in electron-scale turbulence. Non-local turbulence exhibited the rapid spatial propagation of perturbations throughout the plasma, while local turbulence followed the temperature gradient. A transition between drift-wave turbulence and magnetohydrodynamics (MHD) turbulence was observed with the turbulence minimized at the transition condition. Machine learning analysis was employed to evaluate the temperate and density conditions of this turbulence transition. Then, real-time control of fueling and heating was applied to maintain the turbulence transition condition, improving the energy confinement enhancement factor by 20%. In addition, evidence was obtained for collisionless ion heating by energetic-ion-driven geodesic acoustic modes and MHD bursts. These achievements represent unique contributions to the development of fusion reactors.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Possibility of an integrated transmission electron microscope: enabling complex in-situ experiments
Abstract Multimodal in-situ experiments are the wave of the future, as this approach will permit multispectral data collection and analysis during real-time nanoscale observation. In contrast, the evolution of technique development in the electron microscopy field has generally trended toward specialization and subsequent bifurcation into more and more niche instruments, creating a challenge for reintegration and backward compatibility for in-situ experiments on state-of-the-art microscopes. We do not believe this to be a requirement in the field; therefore, we propose an adaptive instrument that is designed to allow nearly simultaneous collection of data from aberration-corrected transmission electron microscopy (TEM), probe-corrected scanning transmission electron microscopy, ultrafast TEM, and dynamic TEM with a flexible in-situ testing chamber, where the entire instrument can be modified as future technologies are developed. The value would be to obtain a holistic understanding of the underlying physics and chemistry of the process-structure–property relationships in materials exposed to controlled extreme environments. Such a tool would permit the ability to explore, in-situ, the active reaction mechanisms in a controlled manner emulating those of real-world applications with nanometer and nanosecond resolution. If such a powerful tool is developed, it has the potential to revolutionize our materials understanding of nanoscale mechanisms and transients. Graphical Abstract
36 MATERIALS SCIENCE↗
High-energy ballistic electrons in low-pressure radio-frequency plasmas
This study demonstrates the presence of a small number of high-energy ballistic electrons (HEBEs) that originate from secondary electrons in low-pressure radio-frequency (rf) plasmas. The kinetic behaviors of the HEBEs are illustrated through electron energy probability functions from the fully kinetic particle-in-cell simulations, showing two wavy high-energy tails and two bifurcations during one rf cycle. Test-particle simulations and a semi-analytical method associated with nonlocal electron kinetics are performed to characterize the HEBE trajectories, which reveal the ballistic nature of the HEBEs and their typical bouncing features between the rf sheaths. Parameter dependence of the HEBEs on the discharge conditions (e.g., gas pressure, gap distance, and rf frequency) are identified, which is relevant to the plasma collisionality. With a pronounced presence of HEBEs, the overall impacts of the secondary electron emission on discharge parameters, such as electron power absorption and ionization rate, are also illustrated.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Experimental inference of flux tunneling between magnetic island chains in tokamaks
We report confinement bifurcations due to flux tunneling in magnetic islands in toroidal plasmas. This occurs in 2/1 islands, triggered by decoupling of non-overlapping adjacent 5/2 islands. While subject to electron cyclotron current drive (ECCD), the temperature at the 2/1 O-point is flat before but peaks after decoupling. Here, this is shown to be due to a bifurcation from stochastic to nested magnetic structure, caused by the removal of flux tunneling through intersecting manifolds of overlapping heteroclinic tangles. 2/1 island stability correlates with coupling events in an ITER baseline scenario plasma where ECCD can not stabilize the coupled islands, showing the critical impact of flux tunneling on disruption avoidance in tokamaks.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Enhancement of ECCD by the current condensation effect for stabilizing large magnetic islands caused by neoclassical tearing modes in tokamak plasmas
The radio frequency current condensation effect reported in Reiman and Fisch (2018 Phys. Rev. Lett. 121 225001) is modeled in the nonlinear resistive magnetohydrodynamic code. A series of numerical investigations have been performed to investigate the enhancement of electron cyclotron current drive (ECCD) by the current condensation effect during the control of neoclassical tearing mode (NTM) in tokamak plasmas. In the numerical model, both the parallel transport and the perpendicular transport of electron temperature are considered. The EC driven current and driven perturbed electron temperature can nonlinearly evolve within the given magnetic configuration and eventually reach saturation states. The input power threshold of ECCD and the fold bifurcation phenomenon are numerically verified via nonlinear simulations. The numerical results show good agreements with the analytical results. Moreover, spatial distributions of EC current for the two solutions at different condensed level are displayed. The control effectiveness of ECCD for large NTM islands has been evaluated while considering the current condensation effect. While taking into account current condensation effect, for a sufficiently large input power, a larger island can be more effectively stabilized than a smaller one, which suggests a reassessment of the previous idea that the ECCD should always be turned on as early as possible. The potential physics mechanism behind the ECCD control have all been discussed in detail. Furthermore, the condensation effect is found to have favorable effects on the radial misalignment of ECCD. In the consideration of the situation for extremely localized control needs, a highly peaked heating profile is adopted to verify that the fold bifurcation phenomenon still exists and the current condensation effect can still take effect in this extreme condition.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗