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At least 73 records · Page 4

Effects of Water Limitation and Competition on Tree Carbon Allocation in an Earth System Modeling Framework

Earth system models (ESMs) have a limited capacity to represent plant functional diversity and shifts in trait distributions. Approaches to improving the representation of this complexity in ESMs include (i) optimality-based approaches that predict trait–environment responses and (ii) explicitly modelling coexistence and community assembly. These approaches are expected to converge only when optimality-based approaches identify competitively dominant strategies, which often differ from strategies that maximize ecosystem functioning or fitness components in monoculture. We used two models, LM3-PPA (a vegetation demographic model designed as an ESM component) and BiomeE (a computationally efficient analog for LM3-PPA), to explore how water limitation affects carbon allocation strategies of canopy trees. We compared competitive allocation strategies and those that maximize biomass or productivity in monoculture. We did not explicitly model coexistence or community assembly. Rather, we used model experiments to identify competitive and maximizing strategies in a two-dimensional trait space under different precipitation and mortality scenarios. At 10 eastern US locations, we simulated historical, wet and dry climate scenarios, novel drought and three different mortality scenarios (low, medium or high sensitivity to water deficit). For each site and scenario, we identified the competitive strategy and three maximizing strategies (maximum biomass, productivity or drought-tolerance). Root: leaf ratios tended to increase and leaf area tended to decrease with increasing water stress (increasing water limitation and its effects on mortality). However, relative to maximizing strategies, competitive strategies shifted towards greater allocation to roots and leaves with increasing water stress. Competitive overinvestments (greater allocation to roots and leaves by competitive strategies compared with maximizing strategies) were robust across different modelling contexts, including vegetation parameter sets (Acer vs. Populus), models (LM3-PPA vs. BiomeE) and uncalibrated vs. calibrated BiomeE versions. Synthesis: The theoretical prediction that competitive and maximizing allocation strategies differ under water limitation is confirmed for a demographic model designed as an ESM component. Optimality-based trait predictions can simplify representing trait diversity in ESMs but do not always correspond to competitive outcomes. Explicitly modelling coexistence and community assembly in ESMs is challenging but is likely the most general approach to representing trait diversity.

vegetation demographic model↗

An ecological framework for microbial metabolites in the ocean ecosystem

The ocean microbe‐metabolite network involves thousands of individual metabolites that encompass a breadth of chemical diversity and biological functions. These microbial metabolites mediate biogeochemical cycles, facilitate ecological relationships, and impact ecosystem health. While analytical advancements have begun to illuminate such roles, a challenge in navigating the deluge of marine metabolomics information is to identify a subset of metabolites that have the greatest ecosystem impact. Here, we present an ecological framework to distill knowledge of fundamental metabolites that underpin marine ecosystems. We borrow terms from macroecology that describe important species, namely “dominant,” “keystone,” and “indicator” species, and apply these designations to metabolites within the ocean microbial metabolome. These selected metabolites may shape marine community structure, function, and health and provide focal points for enhanced study of microbe‐metabolite networks. Applying ecological concepts to marine metabolites provides a path to leverage metabolomics data to better describe and predict marine microbial ecosystems.

microbial metabolites↗

Pinus ponderosa physiology data from the 2023 girdling manipulation field experiment at Game Ridge, Missoula County, Montana, USA

This dataset contains physiology data on Pinus ponderosa saplings, including: leaf water potential (MPa, megapascals), leaf osmotic potential (MPa, megapascals), leaf pressure potential (MPa, megapascals), leaf relative water content (% saturated mass), as well as soluble sugars (% dry mass),starch (% dry mass), and total nonstructural carbohydrates (% dry mass) found in branch phloem and xylem. Data files and data dictionary(ies) are uploaded as .csv files and .xlsx files. The Users Guide is a .pdf file. Location data can be found in the Google Earth file GameRidge_SitePlotCoordinates.kmz.kml included here. These datasets were collected for Plant Carbohydrate Depletion, Mycorrhizal Networks, and Vulnerability to Drought: An Experimental Test in the Field. This experiment examined the interdependency between plant hydraulics and carbohydrate availability and sought to develop ways to incorporate interactions with below ground symbiotic organisms to better model and quantify forest response to drought.

54 ENVIRONMENTAL SCIENCES↗

Decoupling of greenness and gross primary productivity as aridity decreases

Ecosystem primary productivity is a key ecological process influencing many ecosystem services, including carbon storage. Thus, clarifying how primary productivity in terrestrial ecosystems responds to climatic variability can reveal key mechanisms that will drive future changes in the global carbon budget. Satellite products of canopy greenness are widely used as proxies for vegetation productivity to evaluate how ecosystems respond to climate variability. However, to what degree inter-annual variations in productivity are consistent with greenness and how this relationship varies spatially remains unclear. Here we investigated the strength of the coupling between inter-annual variations in leaf area index (LAI, a measure of greenness) and ecosystem gross primary productivity (GPP) derived from eddy covariance towers, i.e., the r2 of the LAI-GPP relationship. Overall, inter-annual GPP and LAI were highly coupled (i.e., high r2) in arid grasslands, but were fully decoupled in mesic evergreen broadleaf forests, indicating that this relationship varies strongly along aridity gradients. A possible mechanism of the spatial variation in the LAI-GPP relationship is that the tradeoff between ecosystem structure (LAI) and physiology (photosynthesis per unit leaf area) becomes stronger in more humid climates. Land models overestimated the r2 of LAI-GPP correlation for most ecosystem types and failed to capture the spatial pattern along aridity gradients. We conclude that relying on greenness products for evaluating inter-annual changes in vegetation productivity may bias assessments, especially in tropical rainforest ecosystems. Our findings may also reconcile observed disparities between responses in greenness and GPP during drought in Amazon forests.

54 ENVIRONMENTAL SCIENCES↗

How to improve scaling from traits to ecosystem processes

Scaling approaches in ecology assume that traits are the main attributes by which organisms influence ecosystem functioning. However, several recent empirical papers have found only weak links between traits and ecosystem functioning, questioning the usefulness of trait-based ecology (TBE). Here, we argue that these studies often suffer from one or more widespread misconceptions. Specifically, these studies often (i) conflict with the conceptual foundations of TBE, (ii) lack theory- or hypothesis-driven selection and use of traits, (iii) tend to ignore intraspecific variation, and (iv) use experimental or study designs that are not well suited to make strong tests of TBE assumptions. Addressing these aspects could significantly improve our ability to scale from traits to ecosystem functioning.

54 ENVIRONMENTAL SCIENCES↗

Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces

These data are from Bandopadhyay et al., "Soil microbial ecology and microbiome-metabolite linkages improve understanding of ecosystem states along terrestrial-aquatic interfaces". This study aims to understand the soil microbial ecology along terrestrial-aquatic interfaces of a freshwater and estuarine region and how it relates to organic matter. We analyzed soil microbial (16S rRNA gene) and organic matter (Fourier-transform ion cyclotron resonance mass spectrometry, FTICR-MS) composition from upland (forested), transition (stressed forest), and wetland positions at three sites in each of the Lake Erie (freshwater) and Chesapeake Bay (estuarine) regions. This dataset includes 16S rRNA gene amplicon data (only processed file types included here) and organic matter composition from FTICR-MS data (raw and processed files included here) from upland (forested), transition (stressed forest), and wetland positions at three sites in each of the Lake Erie and Chesapeake Bay regions. These sites are part of the COMPASS-FME project (https://compass.pnnl.gov/FME/COMPASSFME). File formats and software needed to access files: 16S rRNA gene amplicon data: These files follow the format reported here https://ess-dive.gitbook.io/amplicon-sequencing-reporting-format#updates-in-v1.0.1. As per this format, there are four file types reported: 1. Taxon tables (also called sequence-by-sample or OTU (operational taxonomic unit)/ESV (exact sequence variant) tables) : available in a .txt file format and accessible using TextEdit or MS Excel. 2. Representative sequences (also called consensus sequences) : available in a .fasta format and accessible using TextEdit. 3. Sequencing metadata : available in a MS Excel workbook file format and CSV file format 4. Bioinformatic metadata : available in a MS Excel workbook file format and CSV file format FTICR-MS data: 1. Raw data converted to a processed file with intensities of the peaks in the given samples : available in a MS Excel CSV file format 2. Processed file used in analyses and visualizations (appended as icr_long_) : available in a MS Excel CSV file format 3. Metadata file for ICR features (appended as icr_meta) : available in a MS Excel CSV file format

54 ENVIRONMENTAL SCIENCES↗

Ecological forecasts for marine resource management during climate extremes

Forecasting weather has become commonplace, but as society faces novel and uncertain environmental conditions there is a critical need to forecast ecology. Forewarning of ecosystem conditions during climate extremes can support proactive decision-making, yet applications of ecological forecasts are still limited. We showcase the capacity for existing marine management tools to transition to a forecasting configuration and provide skilful ecological forecasts up to 12 months in advance. The management tools use ocean temperature anomalies to help mitigate whale entanglements and sea turtle bycatch, and we show that forecasts can forewarn of human-wildlife interactions caused by unprecedented climate extremes. We further show that regionally downscaled forecasts are not a necessity for ecological forecasting and can be less skilful than global forecasts if they have fewer ensemble members. Our results highlight capacity for ecological forecasts to be explored for regions without the infrastructure or capacity to regionally downscale, ultimately helping to improve marine resource management and climate adaptation globally.

54 ENVIRONMENTAL SCIENCES↗

Microbial Evolution Drives Adaptation of Substrate Degradation on Decadal to Centennial Time Scales Relevant to Global Change

ABSTRACT Understanding microbial adaptation is crucial for predicting how soil carbon dynamics and global biogeochemical cycles will respond to climate change. This study employs the DEMENT model of microbial decomposition, along with empirical mutation and dispersal rates, to explore the roles of mutation and dispersal in the adaptation of soil microbial populations to shifts in litter chemistry, changes that are anticipated with climate‐driven vegetation dynamics. Following a change in litter chemistry, mutation generally allows for a higher rate of litter decomposition than dispersal, especially when dispersal predominantly introduces genotypes already present in the population. These findings challenge the common idea that mutation rates are too low to affect ecosystem processes on ecological timescales. These results demonstrate that evolutionary processes, such as mutation, can help maintain ecosystem functioning as the climate changes.

Abs, Elsa↗

Photosynthetic and stomatal response, and leaf traits, of two pine species, Talladega National Forest, Alabama, 2023

Photosynthetic response to irradiance (AQ), CO2 (ACi) and stomatal response to irradiance measurements on two pine species common to the southeast United States, long leaf pine, Pinus palustris Mill., and loblolly pine, Pinus taeda L.. Data were collected in June 2023 within the Oakmulgee District of the Talladega National Forest in west-central Alabama at the NEON site (TALL). Measurements were made with four LI-COR LI-6800 and one LI-COR LI-6400XT gas exchange systems. ACi and AQ curves enable the estimation of photosynthetic parameters (e.g., Vcmax, Jmax, Rd, aQY), while stomatal response curves enable the estimation of stomatal slope and intercept parameters. Foliar trait data (needle dimensions, leaf mass per area, leaf nitrogen concentration) is provided for all gas exchange samples. The data package files include multiple raw and processed data files (csv), metadata files (csv), the complete instrument output for all measurements in .zip format, and a pdf describing the experimental protocol.

54 ENVIRONMENTAL SCIENCES↗

Increasing sensitivity of dryland vegetation greenness to precipitation due to rising atmospheric CO 2

Water availability plays a critical role in shaping terrestrial ecosystems, particularly in low- and mid-latitude regions. The sensitivity of vegetation growth to precipitation strongly regulates global vegetation dynamics and their responses to drought, yet sensitivity changes in response to climate change remain poorly understood. Here we use long-term satellite observations combined with a dynamic statistical learning approach to examine changes in the sensitivity of vegetation greenness to precipitation over the past four decades. We observe a robust increase in precipitation sensitivity (0.624% yr –1 ) for drylands, and a decrease (–0.618% yr –1 ) for wet regions. Using model simulations, we show that the contrasting trends between dry and wet regions are caused by elevated atmospheric CO 2 (eCO 2 ). eCO 2 universally decreases the precipitation sensitivity by reducing leaf-level transpiration, particularly in wet regions. However, in drylands, this leaf-level transpiration reduction is overridden at the canopy scale by a large proportional increase in leaf area. The increased sensitivity for global drylands implies a potential decrease in ecosystem stability and greater impacts of droughts in these vulnerable ecosystems under continued global change.

54 ENVIRONMENTAL SCIENCES↗

Social–ecological benefits of land–sea planning at multiple scales in Mesoamerica

Deforestation impacts the ecosystem services provided by downstream coral reefs to coastal communities in multiple ways, such as through increased sedimentation and nutrification. However, connections between terrestrial and marine ecosystems are generally assessed at a single scale and from an ecological perspective alone, limiting our understanding of how watershed management affects the benefits accrued by coastal communities at different scales. Here we explore how ecological and societal benefits of watershed interventions (restoration, protection and sustainable agriculture) differ when considered regionally versus nationally in the Mesoamerican Reef region, by using linked land–sea ecosystem service models. Results from a regional approach prioritize implementing interventions in larger multinational watersheds, leading to neighbouring nations benefiting from increased sediment retention and healthy corals. For the national prioritization approach, selecting for smaller watersheds within individual countries resulted in more societal benefits, particularly increased coastal protection and nature-based tourism, at the cost of improved coral health for neighbouring nations. Finally, we demonstrate how planning at multiple scales across the region can improve ecosystem and societal benefits, resulting in win–win outcomes.

59 BASIC BIOLOGICAL SCIENCES↗

Predicted aboveground biomass of Typha angustifolia in an upland brackish tidal marsh, PIE LTER, Byfield, MA (2022-2024)

This dataset contains predicted monthly aboveground Typha angustifolia biomass per sample and per square meter in a brackish tidal marsh site dominated by Typha angustifolia near the Parker River in the upper estuary of the Plum Island Sound, Massachusetts (MA) during the growing seasons (May-September) of 2022, 2023, and 2024. This site is also located within the Plum Island Ecosystems Long Term Ecological Research Station (PIE LTER). Allometric equations were developed from dry weight data and associated maximum heights collected in 2022 and 2023. The goal of this study was to investigate the difference in aboveground biomass between the site’s marsh interior (MI) and the creek bank (CB). Metadata files (Typha_biomass_predictions_dd.csv and Typha_biomass_predictions_flmd.csv) contain detailed information on variable definitions, calculations, sampling methods, and the location of the site.

DATE↗

Typha angustifolia non-destructive biomass data from an upland tidal brackish marsh, PIE LTER, Byfield, MA, (2022-2024)

This dataset contains non-destructive measurements of key features of Typha angustifolia samples. These samples were measured during the growing season in 2022, 2023, and 2024 in an upland brackish tidal wetland along the Parker River, Byfield, Massachusetts (MA), which is within the Plum Island Ecosystems Long Term Ecological Research Station (PIE LTER). Measurements were taken to investigate the difference in above ground biomass between two locations, the marsh interior (MI) and the creek bank (CB) and to support an allometric equation used to predict aboveground Typha angustifolia biomass per square meter. No QA/QC procedures were applied to the data. Metadata files Typha_biomass_observations_dd.csv and Typha_biomass_observations_flmd.csv contain detailed information on variable definitions, sampling methods, and the location of the site.

CULM_D_1↗

Upland tidal brackish marsh specific conductivity and salinity measurements, PIE LTER, Plum Island Sound, MA, 2023

This dataset includes raw and corrected specific conductivity, temperature, and calculated salinity measurements collected at 10 cm depth in a Typha angustifolia-dominated tidal brackish wetland at the upper estuary of Plum Island Sound in Newbury, Massachusetts (MA) within the Plum Island Ecosystems Long Term Ecological Research (PIE LTER) site. Measurements were taken to evaluate temporal variation in porewater salinity (a proxy for porewater sulfate concentration) in high frequency to assess soil and plant responses to changes in salinity. Measurements were collected using an Onset HOBO U24-002 Saltwater Conductivity/Salinity data logger deployed in a well. Specific conductivity was corrected using non-linear temperature compensation, and salinity was calculated using the Practical Salinity Scale 1978 via Onset's HOBOware software. Reference conductivity measurements to correct for sensor drift were taken at the start and end of each deployment using a HACH HQ14D Portable Conductivity Meter. Data were then filtered in MATLAB to remove values logged while the sensor was out of the well or during post-deployment equilibration. Detailed metadata, including variable descriptions, sampling methods, QA/QC procedures, and site information, are provided in the files: Typha_ctd_salinity_dd.csv and Typha_MI_ctd_salinity_2023_flmd.csv.

54 ENVIRONMENTAL SCIENCES↗

Upland tidal brackish marsh specific conductivity and salinity measurements, PIE LTER, Plum Island Sound, MA, May-December 2022

This dataset includes raw and corrected specific conductivity, temperature, and calculated salinity measurements collected at 10 cm depth in a Typha angustifolia-dominated tidal brackish wetland at the upper estuary of Plum Island Sound in Newbury, Massachusetts (MA) within the Plum Island Ecosystems Long Term Ecological Research (PIE LTER) site. Measurements were taken to evaluate temporal variation in porewater salinity (a proxy for porewater sulfate concentration) in high frequency to assess soil and plant responses to changes in salinity. Measurements were collected using an Onset HOBO U24-002 Saltwater Conductivity/Salinity data logger deployed in a well. Specific conductivity was corrected using non-linear temperature compensation, and salinity was calculated using the Practical Salinity Scale 1978 via Onset's HOBOware software. Reference conductivity measurements to correct for sensor drift were taken at the start and end of each deployment using a HACH HQ14D Portable Conductivity Meter. Data were then filtered in MATLAB to remove values logged while the sensor was out of the well or during post-deployment equilibration. Detailed metadata, including variable descriptions, sampling methods, QA/QC procedures, and site information, are provided in the files: Typha_ctd_salinity_dd.csv and Typha_MI_ctd_salinity_2023_flmd.csv.

54 ENVIRONMENTAL SCIENCES↗

Specific conductivity and salinity of the Parker River, PIE LTER, Plum Island Sound MA, August-November 2022

This dataset contains specific conductivity and calculated salinity data of Parker River water at a tidal brackish wetland dominated by Typha angustifolia at the upper estuary of the Plum Island Sound in Newbury, Massachusetts (MA) within the Plum Island Ecosystems Long Term Ecological Research site (PIE LTER). Measurements were taken to evaluate temporal changes in surface water salinity in high frequency to characterize boundary conditions of soil and plant responses to changes in salinity. A PVC pipe was installed in a low elevation spot in the creek bank so that the bottom of the pipe sat on the sediment surface allowing flushing with water during flooding. Raw measurements were collected using an Onset HOBO U24-002 Saltwater Conductivity/Salinity data logger. The specific conductance and salinity measurements were corrected and calculated respectively using Onset’s HOBOware software and reference specific conductivity measurements taken in tandem with the first and last points recorded by the HOBO sensor. These reference measurements were taken using a HACH HQ14D Portable Conductivity Meter. Because of the installation design, only data one hour before and after high tide are used. Metadata files Typha_ctd_salinity_dd.csv and Typha_ctd_salinity_flmd.csv contain detailed information on data variables, sampling and QA/QC methods, and site location.

54 ENVIRONMENTAL SCIENCES↗

Specific conductivity and salinity of the Parker River, PIE LTER, Plum Island Sound MA, March-November 2023

This dataset contains specific conductivity and calculated salinity data of Parker River water at a tidal brackish wetland dominated by Typha angustifolia at the upper estuary of the Plum Island Sound in Newbury, Massachusetts (MA) within the Plum Island Ecosystems Long Term Ecological Research site (PIE LTER). Measurements were taken to evaluate temporal changes in surface water salinity in high frequency to characterize boundary conditions of soil and plant responses to changes in salinity. A PVC pipe was installed in a low elevation spot in the creek bank so that the bottom of the pipe sat on the sediment surface allowing flushing with water during flooding. Raw measurements were collected using an Onset HOBO U24-002 Saltwater Conductivity/Salinity data logger. The specific conductance and salinity measurements were corrected and calculated respectively using Onset’s HOBOware software and reference specific conductivity measurements taken in tandem with the first and last points recorded by the HOBO sensor. These reference measurements were taken using a HACH HQ14D Portable Conductivity Meter. Because of the installation design, only data one hour before and after high tide are used. Metadata files Typha_ctd_salinity_dd.csv and Typha_ctd_salinity_flmd.csv contain detailed information on data variables, sampling and QA/QC methods, and site location.

54 ENVIRONMENTAL SCIENCES↗