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NASA NTRS2016

Stewardship of NASA's Earth Science Data and Ensuring Long-Term Active Archives

Program, NASA has followed an open data policy, with non-discriminatory access to data with no period of exclusive access. NASA has well-established processes for assigning and or accepting datasets into one of 12 Distributed Active Archive Centers (DAACs) that are parts of EOSDIS. EOSDIS has been evolving through several information technology cycles, adapting to hardware and software changes in the commercial sector. NASA is responsible for maintaining Earth science data as long as users are interested in using them for research and applications, which is well beyond the life of the data gathering missions. For science data to remain useful over long periods of time, steps must be taken to preserve: (1) Data bits with no corruption, (2) Discoverability and access, (3) Readability, (4) Understandability, (5) Usability' and (6). Reproducibility of results. NASAs Earth Science data and Information System (ESDIS) Project, along with the 12 EOSDIS Distributed Active Archive Centers (DAACs), has made significant progress in each of these areas over the last decade, and continues to evolve its active archive capabilities. Particular attention is being paid in recent years to ensure that the datasets are published in an easily accessible and citable manner through a unified metadata model, a common metadata repository (CMR), a coherent view through the earthdata.gov website, and assignment of Digital Object Identifiers (DOI) with well-designed landing product information pages.

Data Management↗
NASA NTRS2016

Plasma Observations During the Mars Atmospheric Plume Event of March-April 2012

We present initial analysis and conclusions from plasma observations made during the reported Mars Dust plume event of March - April 2012. During this period, multiple independent amateur observers detected a localized, high-altitude plume over the Martian dawn terminator [Sanchez-Lavega7 et al., Nature, 2015, doi:10.1038nature14162], the origin of which remains to be explained. We report on in-situ measurements of ionospheric plasma density and solar wind parameters throughout this interval made by Mars Express, obtained over the surface region, but at the opposing terminator. We tentatively conclude that the formation and/or transport of this plume to the altitudes where it was observed could be due in part the result of a large interplanetary coronal mass ejection (ICME) encountering the Martian system. Interestingly, we note that a similar plume detection in May 1997 may also have been associated with a large ICME impact at Mars.

Plumes↗
NASA NTRS2016

Aerosol Optical Properties at the Lulin Atmospheric Background Station in Taiwan and the Influences of Long-Range Transport of Air Pollutants

The Lulin Atmospheric Background Station (LABS, 23.47 deg. N 120.87 deg. E, 2862 m ASL) in Central Taiwan was constructed in 2006 and is the only high-altitude background station in the western Pacific region for studying the influence of continental outflow. In this study, extensive optical properties of aerosols, including the aerosol light scattering coefficient [Sigma(sub s)] and light absorption coefficient [Sigma(sub a)], were collected from 2013 to 2014. The intensive optical properties, including mass scattering efficiency [Sigma(sub s)], mass absorption efficiency [Sigma(sub a)] single scattering albedo (Omega), scattering Angstrom exponent (A), and backscattering fraction (b), were determined and investigated, and the distinct seasonal cycle was observed. The value of [Alpha(sub a)] began to increase in January and reached a maximum in April; the mean in spring was 5.89 m(exp. 2) g(exp. -1) with a standard deviation (SD) of 4.54 m(exp. 2) g(exp. -1) and a 4.48 m(exp. 2) g(exp. -1) interquartile range (IQR: 2.95-7.43 m(exp. 2) g(exp. -1). The trend was similar in [Sigma(sub a)], with a maximum in March and a monthly mean of 0.84 m(exp. 2) g(exp. -1). The peak values of Omega (Mean = 0.92, SD = 0.03, IQR: 0.90 - 0.93) and A (Mean = 2.22, SD = 0.61, IQR: 2.12 = 2.47) occurred in autumn. These annual patterns of optical properties were associated with different long-range transport patterns of air pollutants such as biomass burning (BB) aerosol in spring and potential anthropogenic emissions in autumn. The optical measurements performed at LABS during spring in 2013 were compared with those simultaneously performed at the Doi Ang Kang Meteorology Station, Chiang Mai Province, Thailand (DAK, 19.93 deg. N, 99.05 deg. E, 1536 m a.s.l.), which is located in the Southeast Asia BB source region. Furthermore, the relationships among [Sigma(sub s)], [Sigma(sub a)], and (b) were used to characterize the potential aerosol types transported to LABS during different seasons, and the data were inspected according to the HYSPLIT 5-day backward trajectories, which differentiate between different regions of air mass origin.

aerosol optical properties↗
NASA NTRS2016

A Compilation of Global Bio-Optical in Situ Data for Ocean-Colour Satellite Applications

A compiled set of in situ data is important to evaluate the quality of ocean-colour satellite-data records. Here we describe the data compiled for the validation of the ocean-colour products from the ESA Ocean Colour Climate Change Initiative (OC-CCI). The data were acquired from several sources (MOBY, BOUSSOLE, AERONET-OC, SeaBASS, NOMAD, MERMAID, AMT, ICES, HOT, GePCO), span between 1997 and 2012, and have a global distribution. Observations of the following variables were compiled: spectral remote-sensing reflectances, concentrations of chlorophyll a, spectral inherent optical properties and spectral diffuse attenuation coefficients. The data were from multi-project archives acquired via the open internet services or from individual projects, acquired directly from data providers. Methodologies were implemented for homogenisation, quality control and merging of all data. No changes were made to the original data, other than averaging of observations that were close in time and space, elimination of some points after quality control and conversion to a standard format. The final result is a merged table designed for validation of satellite-derived ocean-colour products and available in text format. Metadata of each in situ measurement (original source, cruise or experiment, principal investigator) were preserved throughout the work and made available in the final table. Using all the data in a validation exercise increases the number of matchups and enhances the representativeness of different marine regimes. By making available the metadata, it is also possible to analyse each set of data separately. The compiled data are available at doi:10.1594PANGAEA.854832 (Valente et al., 2015).

Valente, Andre↗
NASA NTRS2015

Investigation of the CCN Activity, BC and UVBC Mass Concentrations of Biomass Burning Aerosols during the 2013 BASELInE Campaign

Biomass-burning (BB) aerosols, acting as cloud condensation nuclei (CCN), can influence cloud microphysical and radiative properties. In this study, we present CCN measured near the BB source regions over northern Southeast Asia (Doi Ang Khang, Thailand) and at downwind receptor areas (Lulin Atmospheric Background Station, Taiwan), focusing exclusively on 13-20 March 2013 as part of 2013 spring campaign of the Seven SouthEast Asian Studies (7-SEAS) intensive observation. One of the campaigns objectives is to characterize BB aerosols serving as CCN in SouthEast Asia (SEA). CCN concentrations were measured by a CCN counter at 5 supersaturation (SS) levels: 0.15%, 0.30%, 0.45%, 0.60%, and 0.75%. In addition, PM2.5 and black carbon mass concentrations were analyzed by using a tapered element oscillating microbalance and an aethalometer. It was found the number-size distributions and the characteristics of hygroscopicity (e.g., activation ratio and k) of BB aerosols in SEA have a strong diurnal pattern, and different behaviors of patterns were characterized under two distinct weather systems. The overall average value was low (0.05-0.1) but comparable with previous CCN studies in other BB source regions. Furthermore, a large fraction of UV-absorbing organic material (UVBC) and high Delta-C among BB aerosols were also observed, which suggest the existence of substantial particulate organic matter in fresh BB aerosols. These data provide the most extensive characterization of BB aerosols in SEA until now.

biomass burning aerosol↗
NASA NTRS2016

Characterization of Particulate Matter Profiling and Alveolar Deposition from Biomass Burning in Northern Thailand: The 7-SEAS Study

Biomass burning (BB) frequently occurs in SouthEast Asia (SEA), which significantly affects the air quality and could consequently lead to adverse health effects. The aim of this study was to characterize particulate matter (PM) and black carbon (BC) emitted from BB source regions in SEA and their potential of deposition in the alveolar region of human lungs. A 31-day characterization of PM profiling was conducted at the Doi Ang Khang (DAK) meteorology station in northern Thailand in March 2013. Substantial numbers of PM (10147 +/- 5800 # per cubic centimeter) with a geometric mean diameter (GMD) of 114.4 +/- 9.2 nm were found at the study site. The PM of less than 2.5 micron in aerodynamic diameter (PM sub 2.5) hourly-average mass concentration was 78.0 +/- 34.5 per cubic microgram whereas the black carbon (BC) mass concentration was 4.4 +/- 2.6 micrograms per cubic meter. Notably, high concentrations of nanoparticle surface area (100.5 +/- 54.6 square micrometers per cubic centimeter) emitted from biomass burning can be inhaled into the human alveolar region. Significant correlations with fire counts within different ranges around DAK were found for particle number, the surface area concentration of alveolar deposition, and BC. In conclusion, biomass burning is an important PM source in SEA, particularly nanoparticles, which has high potency to be inhaled into the lung environment and interact with alveolar cells, leading to adverse respiratory effects. The fire counts within 100 to 150 km shows the highest Pearson's r for particle number and surface area concentration. It suggests 12 to 24 hr could be a fair time scale for initial aging process of BB aerosols. Importantly, the people lives in this region could have higher risk for PM exposure.

biomass burning↗
NASA NTRS2016

Radiative Effect of Springtime Biomass-Burning Aerosols over Northern Indochina During 7-SEAS Baseline 2013 Campaign

The direct aerosol radiative effects of biomass-burning (BB) aerosols over northern Indochina were estimated by using aerosol properties (physical, chemical, and optical) along with the vertical profile measurements from ground-based measurements with integration of an optical and a radiative transfer model during the Seven South East Asian Studies Biomass-Burning Aerosols Stratocumulus Environment: Lifecycles Interactions Experiment (7-SEASBASELInE) conducted in spring 2013. Cluster analysis of backward trajectories showed the air masses arriving at mountainous background site (Doi Ang Khang; 19.93degN, 99.05degE, 1536 m above mean sea level) in northern Indochina, mainly from near-source inland BB activities and being confined in the planetary boundary layer. The PM(sub10) and black carbon (BC)mass were 87 +/- 28 and 7 +/- 2 micrograms m(exp -3), respectively. The aerosol optical depth (AOD (sub 500) was found to be 0.26--1.13 (0.71 +/- 0.24). Finer (fine mode fraction is approximately or equal to 0.95, angstrom-exponent at 440-870 nm is approximately or equal to 1.77) and significantly absorbing aerosols(single scattering albedo is approximately or equal to 0.89, asymmetry-parameter is approximately or equal to 0.67, and absorption AOD 0.1 at 440 nm) dominated over this region. BB aerosols (water soluble and BC) were the main contributor to the aerosol radiative forcing (ARF), while others (water insoluble, sea salt and mineral dust) were negligible mainly due to their low extinction efficiency. BC contributed only 6 to the surface aerosol mass but its contribution to AOD was 12 (2 times higher). The overall mean ARF was 8.0 and -31.4 W m(exp -2) at top-of-atmosphere (TOA) and at the surface (SFC), respectively. Likely, ARF due to BC was +10.7 and -18.1 W m(exp -2) at TOA and SFC, respectively. BC imposed the heating rate of +1.4 K d(exp -1) within the atmosphere and highlighting its pivotal role in modifying the radiation budget. We propose that to upgrade our knowledge on BB aerosol radiative effects in BB source region, the long-term and extensive field measurements are needed.

aerosol optical properties↗
NASA NTRS2018

Atmosphere-Ocean Coupled Data Assimilation Using NASA GEOS: Estimation of Air-Sea Interface State Variables

Air-sea interface variables, such as the skin Sea Surface Temperature (SST) are essential for atmosphere-ocean coupling. In the NASA GMAO Data Assimilation System (DAS), the skin SST and 3-D atmospheric state are jointly estimated [1]. This presentation is focused on the prior or background error covariance that is used in this analysis. The GEOS DAS uses an ensemble-variational assimilation strategy. In that, specification of a climatological background (CB) error covariance for SST relies on the NOAA's OI SST, with estimates of standard deviation and correlation length scales based on weekly analyses of the bulk SST at 1 degree resolution. However, present analysis system is striving to resolve SST diurnal variability with six hourly analyses and assimilates a vast number of in-situ and satellite observations. The first part of this presentation re-derives the CB error covariance using OSTIA SST analyses and illustrates the impact of this update on assimilating satellite observations. In a hybrid assimilation system the CB error covariances are appended with a flow-dependent background error covariance estimate implied by the underlying ensemble. The second part of this presentation refers to: a. treatment of the skin SST in the ensemble members, b. corresponding ensemble spread, and c. impact of these additions on the data assimilation system. [1] S. Akella, et al. (2017), doi:10.1002/qj.2988

Akella, Santha↗
NASA NTRS2018

The SPASE Data Model: A Metadata Standard for Registering, Finding, Accessing, and Using Heliophysics Data Obtained from Observations and Modeling

The Space Physics Archive Search and Extract Consortium has developed and implemented the SPASE Data Model that provides a common language for registering a wide range of Heliophysics data and other products. The Data Model enables discovery and access tools such that any researcher can obtain data easily, thereby facilitating research, including on space weather. The Data Model includes descriptions of Simulation Models and Numerical Output, pioneered by the Integrated Medium for Planetary Exploration (IMPEx) group in Europe, and subsequently adopted by the Community Coordinated Modeling Center (CCMC). The SPASE group intends to register all relevant Heliophysics data resources, including space-, ground-, and model-based. Substantial progress has been made, especially for space-based observational data and associated observatories, instruments, and display data. Legacy product registrations and access go back more than 50 years. Real-time data will be included. The National Aeronautics and Space Administration (NASA) portion of the SPASE group has funding that assures continuity in the upkeep of the Data Model and aids with adding new products. Tools are being developed for making and editing data descriptions. Digital Object Identifiers (DOIs) for Data Products can now be included in the descriptions. The data access that SPASE facilitates is becoming more uniform, and work is progressing on Web Service access via a standard Application Programming Interface. The SPASE Data Model is stable; changes over the past 9 years were additions of terms and capabilities that are backward compatible. This paper provides a summary of the history, structure, use, and future of the SPASE Data Model.

Roberts, D. Aaron↗
NASA NTRS2016

Managing and Servicing Physical Oceanographic Data at a NASA Distributed Active Archive Center

The NASA Earth Science Data Information Systems Project funds and operates 12 Distributed Active Archive Center(s) (DAAC) throughout the United States. Of these 12 centers, the Physical Oceanography DAAC (PO.DAAC) is committed to providing long term archival, distribution and stewardship for NASA physical oceanographic data, primarily derived from space-born satellite systems, but also including a growing set of recent and future in situ observations from the SPURS-1 and SPURS-2 campaigns. Notable NASA missions supported include: Seasat, TOPEX/Poseidon, NSCAT, QuikSCAT, ISS-RapidScat, Jason-1, Jason-2/OSTM, GRACE, Aquarius, GHRSST, and MODIS. The following interagency and international missions are also supported by PO.DAAC: AVHRR, Coriolis, DMSP, MetOp-A, MetOp-B, Oceansat-2. The PO.DAAC currently holds 525 datasets in public distribution, spanning the following observational parameters: sea surface temperature, sea surface salinity, ocean color, ocean surface currents, ocean surface wind speed, ocean surface wind direction, sea surface height, significant wave height, ocean water mass/thickness, and sea ice age. A hundred of these datasets are available in near-real-time. Datasets are distributed through a variety of open-source access protocols including FTP, OPeNDAP, and THREDDS. FTP will soon be phased out in favor of a recently introduced HTTPS PO.DAAC Drive interface that supports WebDAV and interoperable machine-to-machine communication. OPeNDAP supports remote data/metadata query, subset, and download. THREDDS provides the features of OPeNDAP with the additional feature of temporal aggregation. PO.DAAC also offers proprietary tools and services to further enhance the data discovery, visualization and analysis experience, including but not limited to: State of the Ocean, Web Services (data/metadata discovery and extraction), HiTIDE Level-2 subsetter, Live Access Server (LAS), Webification (w10nsci), and Rich Site Summary (RSS) Datacasting. To assist with provenance of datasets, PO.DAAC has implemented DOIs for the data it distributes so that they can be properly cited. There is a user forum and helpdesk that contains data recipes and via which users can get guidance. In summary, this presentation aims to provide a general overview of PO.DAAC’s web portal and data holdings along with a set of illustrative examples leading prospective data users into the practical utility of its tools and services.

Moroni, David F.↗
NASA NTRS2018

Northern Hemisphere Surface Freeze-Thaw Product from Aquarius L-Band Radiometers

In the Northern Hemisphere, seasonal changes in surface freeze–thaw (FT) cycles are an important component of surface energy, hydrological and eco-biogeochemical processes that must be accurately monitored. This paper presents the weekly polar-gridded Aquarius passive L-band surface freeze–thaw product (FT-AP) distributed on the Equal-Area Scalable Earth Grid version 2.0, above the parallel 50 N, with a spatial resolution of 36 km36 km. The FT-AP classification algorithm is based on a seasonal threshold approach using the normalized polarization ratio, references for frozen and thawed conditions and optimized thresholds. To evaluate the uncertainties of the product, we compared it with another satellite FT product also derived from passive microwave observations but at higher frequency: the resampled 37 GHz FT Earth Science Data Record (FTESDR). The assessment was carried out during the overlapping period between 2011 and 2014. Results show that 77.1% of their common grid cells have an agreement better than 80 %. Their differences vary with land cover type (tundra, forest and open land) and freezing and thawing periods. The best agreement is obtained during the thawing transition and over forest areas, with differences between product mean freeze or thaw onsets of under 0.4 weeks. Over tundra, FT-AP tends to detect freeze onset 2–5 weeks earlier than FT-ESDR, likely due to FT sensitivity to the different frequencies used. Analysis with mean surface air temperature time series from six in situ meteorological stations shows that the main discrepancies between FT-AP and FT-ESDR are related to false frozen retrievals in summer for some regions with FT-AP. The Aquarius product is distributed by the U.S. National Snow and Ice Data Center (NSIDC) at https://nsidc.org/data/aq3_ft/versions/5 with the DOI https://doi.org/10.5067/OV4R18NL3BQR.

Prince, Michael↗
NASA NTRS2019

Landsat 9 Micrometeoroid and Orbital Debris (MMOD) Mission Success Approach

Landsat 9* (L9) is the successor mission to Landsat 8 (L8) previously known as Landsat Data Continuity Mission (LDCM). Both missions are large unmanned remote sensing satellites operating in sunsynchronous polar orbits. As opposed to L8/LDCM, systems engineers for L9 incorporated Micrometeoroid/Orbital Debris (MMOD) protection for small object collisions as part of the L9’s mission success criteria. In other words, the NASA Process for Limiting Orbital Debris (NASA-STD-8719.14A) only calls for analyses of the protection of disposal-critical hardware, but L9 opted to also assess and provide small particle penetration protections for all observatory components including instruments that are not part of the spacecraft components needed for controlled reentry. Systems engineers at Goddard developed a design process to protect against MMOD during the life of Low Earth Orbit (LEO) observatories, and in particular the Landsat 9 Mission. Simply stated, this design process enhanced the effectiveness of existing Multi-Layer Insulation (MLI) to provide the needed protection. The end goal of the design process was to establish a necessary blanket areal density for a given electronics box or instrument wall thickness and a separation between the outer MLI blanket and the structure underneath. The trade space was presented as a set of design curves for different combinations of blanket density, box wall thickness, and separation distance between MLI and structure. An advantage of this process was that it is largely independent of MMOD flux data on a surface-by surface basis. Ultimately, cost savings should result from incorporating small object penetration protection early in the design cycle, rather than adding spot shielding blankets later as needed to meet an overall penetration risk standard (the more traditional approach). The approach and implementation to the L9 Observatory design will be addressed in this paper. *L9 is a joint mission being formulated, implemented, and operated by the National Aeronautics and Space Administration (NASA) and the Department of the Interior’s (DOI) United States Geological Survey (USGS).

Approach↗
NASA NTRS2020

High-Resolution UV/Optical/IR Imaging of Jupiter in 2016–2019

Imaging observations of Jupiter with high spatial resolution were acquired beginning in 2016, with a cadence of 53 days to coincide with atmospheric observations of the Juno spacecraft during each perijove pass. The Wide Field Camera 3 (WFC3) aboard the Hubble Space Telescope (HST) collected Jupiter images from 236 to 925 nm in 14 filters. The Near-Infrared Imager (NIRI) at Gemini North imaged Jovian thermal emission using a lucky-imaging approach (co-adding the sharpest frames taken from a sequence of short exposures), using the M' filter at 4.7 μm. We discuss the data acquisition and processing and an archive collection that contains the processed WFC3 and NIRI data (doi:10.17909/T94T1H). Zonal winds remain steady over time at most latitudes, but significant evolution of the wind profile near 24°N in 2016 and near 15°S in 2017 was linked with convective superstorm eruptions. Persistent mesoscale waves were seen throughout the 2016–2019 period. We link groups of lightning flashes observed by the Juno team with water clouds in a large convective plume near 15°S and in cyclones near 35°N–55°N. Thermal infrared maps at the 10.8 micron wavelength obtained at the Very Large Telescope show consistent high brightness temperature anomalies, despite a diversity of aerosol properties seen in the HST data. Both WFC3 and NIRI imaging reveal depleted aerosols consistent with downwelling around the periphery of the 15°S storm, which was also observed by the Atacama Large Millimeter/submillimeter Array. NIRI imaging of the Great Red Spot shows that locally reduced cloud opacity is responsible for dark features within the vortex. The HST data maps multiple concentric polar hoods of high-latitude hazes.

Michael H. Wong↗
NASA NTRSDate not supplied

Regional variability of dust single scattering albedo due to mineral composition

Nearly all Earth System Models (ESMs) assume globally homogeneous dust aerosols, neglecting regional variations of the imaginary refractive index (IRI) due to varying mineral composition. This has led to a range of single scattering albedo (SSA) and direct radiative forcing (DRF) estimates, as models assign global properties using dust measurements from different regions. We use model and observational data to assess to what extent regionally varying mineral composition affects visible-band SSA and short-wave DRF of dust. We run global simulations with NASA GISS ModelE2.1, using optical properties for minerals based on laboratory-derived empirical relationships between dust IRI at visible wavelengths and the mineral content of iron oxides. When allowing mineral variations instead of homogeneous dust, we find regional differences in dust SSA up to ~0.06 and consequent variations in DRF up to ~6 and ~5 W/m2, at surface and top-of-atmosphere respectively. We compare model SSA with AERONET inversion data (Version 3.0, Level 2), filtered by aerosol size and optical properties to identify pure dust scenes. To investigate possible contamination by biomass burning aerosols, we use the dataset of Schuster et al. (2016, doi:10.5194/acp-16-1565-2016), who separately calculated the contribution of iron oxides and carbonaceous species to AERONET extinction and absorption optical depths. Our results show that: (1) the range of observed SSA (even without carbonaceous species) is larger than that resulting from homogeneous dust; (2) residual amounts of fine mode black and brown carbon may affect AERONET SSA even in seasons with limited biomass burning; (3) model SSA from our mineral scheme exceeds the AERONET range, possibly due also to an uncertain treatment of goethite. In summary, homogeneous dust cannot explain the variability of observed SSA, so regionally varying optical properties based on mineral content are necessary. Higher accuracy in soil mineralogy maps is needed to better reproduce SSA variations at regional scales. Also, distinct soil maps for hematite and goethite are required, given the high sensitivity of model SSA to their extreme optical properties.

V. Obiso↗
NASA NTRSDate not supplied

NASA/EOSDIS Persistent Identifiers Status Update

This presentation summarizes the current status of NASA/Earth Observing System Data & Information System (EOSDIS) Digital Object Identifiers (DOIs) which provide Persistent Identifiers for citing NASA data sets.

Persistent Identifiers↗
NASA NTRSDate not supplied

A Hybrid Approach to Labeling Datasets in Earth Science Publications

NASA Data Centers provide the public with thousands of datasets that result in published papers, reports, and conference proceedings. Collecting accurate metrics on usage of these datasets is key to connecting different areas of knowledge and evaluating the datasets’ impact. While most of the datasets have Digital Object Identifiers (DOIs) assigned, most publications do not cite them hampering the automated search of these publications. Instead, articles mention attributes like organization, instrument, mission, variable, or a publication describing the dataset. Often only domain experts can deduce the dataset that was used in the publication text. The lack of a citation slows the spread of information and reduces the research’s impact. With thousands of papers produced each year, an automated means of labeling datasets is critical. This paper explores a hybrid approach of heuristics and a Natural Language Processing (NLP) Named Entity Recognition (NER) model to find and label the datasets used within Earth Science papers. Heuristics are used to produce the labelled sentences and any potential dataset candidates that can be derived from a sentence. The heuristic labels the sentences with the names of mission, instrument, re-analysis models, and science keywords taken from the Global Change Master Directory (GCMD) ontology. Additionally, it uses those labels to generate the dataset citation candidates. If the mission, instrument, and variable are sufficient to create the citation for the dataset the citation and the label the domain expert reviews the output without going through the NLP model. If the extracted label is not sufficient to label the dataset on its own, the sentence and its associated dataset labels will be inputted into the NER model. The model outputs the labeled sentence and the potential dataset candidates with their associated probabilities. The domain expert then reviews the NER model’s output and the correct labels are determined. The newly labelled papers can then be used as additional training data. This creates an iterative process for the approach to continuously improve. Because all the possible mentions are gathered by the model, the domain expert can quickly and easily label the papers resulting in large time savings.

Jacob Atkins↗
NASA NTRSDate not supplied

A METHOD TO REDUCE BIOBURDEN IN ASTROMATERIALS CURATION FACILITIES WITHOUT INTRODUCING UNWANTED CONTAMINATION

Introduction: NASA curates its Astromaterials collections in cleanrooms that are carefully monitored for particulate, inorganic and trace metal contamination. Current sample collections are not particularly susceptible to organic contamination or biological alteration. However, new collections like those from the OSIRIS-REx and Hayabusa2 missions will have organic contamination requirements and are susceptible to biodegradation. It will be necessary sterilize or at least disinfect curation labs, as well as tools and equipment in a manner that does not introduce additional contamination and does not affect the samples 1. Current curation cleaning procedures utilize isopropyl alcohol which offers some bioburden reduction, but is not effective against spore-forming bacteria or fungal spores 2. We present a modified disinfection method that uses ultrapure hydrogen peroxide to reduce bioburden inside curation labs and glove boxes without introducing contamination or damaging curation equipment. We tested this method in the meteorite processing lab as well as on a glovebox being cleaned for use in processing ANGSA (Apollo Next Generation Sample Analysis) samples and present the results of those tests. We discuss the limitations of this method and describe potential situations in which it will not be applicable. The CDC guidelines for disinfection andsterilization in healthcare facilities discusses over 15different methods for reducing bioburden in hospitalsettings 3. The most common method, steamsterilization, is well suited to sterilizing curationprocessing tools but cannot easily be used to sterilizecleanroom surfaces or large equipment likegloveboxes. Chemical sterilization with bleach(NaOCl) is also a common strategy in healthcare andpharmaceutical settings that presents materialcompatibility issues as well as serious inorganiccontamination concerns for curation facilities.Introducing a new source of Na and Cl into curationlabs is not acceptable. Other chemical methods likeethylene oxide, formaldehyde, iodophors andquaternary ammonium compounds could introduceorganic and inorganic contamination. We chose tofocus on hydrogen peroxide because it is generallycompatible with commonly used curation materialslike stainless steel, aluminum and Teflon and becauseit decomposes to oxygen and water. The CDCguidelines for hydrogen peroxide specify using a 7.5wt% solution at 25 ̊C with a contact time of 30 minutesfor high level disinfection and 6 hours for sterilization.High level disinfection is defined as a technique thatwill kill all microorganisms except large numbers ofbacterial spores 3. Methods: We prepared a solution of 7.5 wt%hydrogen peroxide from a stock solution of ultrapure30 wt% peroxide (JT Baker) and curation gradeultrapure water. This ultrapure water is already used incuration cleaning procedures and thus is not consideredand additional source of contamination. We conducteda materials compatibility test by exposing unanodizedand anodized 6061 T6 Al alloy to the peroxide solutionfor up to six hours and periodically inspecting thesurfaces for visible defects. We used this peroxide todisinfect the floor of the meteorite processing lab andthe interior of a curation glovebox by exposing thesesurfaces to the peroxide solution for 30 min. Thesurfaces were swabbed with a dry macrofoam swabbefore (Puritan Brand 2518051PFRNDFD) and afterperoxide treatment to collect microbes present on thesurfaces. Microbes were extracted by sonication fromthe swab into 15 ml of PBS (phosphate buffered saline)and inoculated onto the following media: TSA (trypticsoy agar) BA (blood agar), R2A (Reasoners 2 agar),Potato Dextrose Agar, Saboraud Dextrose Agar andSaboraud Dextrose Agar with 0.1 mg/ mlchloramphenicol. Four TSA plates and two BA plateswere inoculated with 0.1 ml of PBS each andincubated at 35 and 37 for 48 hours. Two R2A°C°Cplates (0.1 ml of PBS each) were incubated at 25 .°CThe remaining plates were inoculated with 0.2ml ofPBS and incubated at 30 ̊C for seven days. Afterincubation bacterial and fungal isolates were countedand transferred to new plates for identification usingthe VITEK24 automated system or by sequencing aportion of the barcode gene (16S rRNA for bacteria,small subunit gene for fungi) on an ABI 3500 Sangersequencer. Negative controls consisted of swabs thatwere opened in the sampling environment andanalyzed alongside the experimental samples.Results: A 6 hour exposure to hydrogen peroxideresulted in visible pitting on un-anodized 6061 Al, butnot on anodized surfaces. No visible pitting occurredafter a 30 minute exposure. Therefore, we decided tolimit our experimental tests to 30 min. exposures. 17bacterial CFU (colony forming units) representing 4distinct organisms were isolated from the meteorite processing lab floor prior to hydrogen peroxidetreatment. We were unable culture any organisms afterperoxide treatment. In the glovebox we were able toculture three bacterial CFU representing three distinctspecies, including a spore forming bacterium prior todisinfection with peroxide. After the peroxidetreatment we were unable to culture any organisms.Routine monitoring of the meteorite processing lab andthe glovebox did not indicate any increase in unwantedinorganic contamination after these peroxidetreatments. Discussion: A 30 minute treatment with 7.5 wt%peroxide appears to be an effective method forreducing bioburden on typical cleanroom surfaces. Themethod does not introduce unwanted organic orinorganic contamination and is compatible withcommonly used curation materials like stainless steel,Teflon and anodized aluminum alloys. Special careshould be taken with un-anodized aluminum.Prolonged exposure to hydrogen peroxide can causepitting on this material. We recommend using thismethod to disinfect curation labs and equipment whenbiological alteration is a concern. This method iseffective at room temperature and cannot be used todisinfect labs and equipment where the ambienttemperature is < 0 ̊C. Astromaterials samples shouldbe removed from the area where disinfection is tooccur. Hydrogen peroxide is a powerful oxidizingagent and will react with any organic carbon present inthe sample. References: [1.] Mccubbin, F. M. et al.Sp. Sci Rev(2019) doi:10.1007/s11214-019-0615-9. [2.] Mogul, R.et al.Astrobiology 18, ast.2017.1814 (2018). [3.]Rutala, W. A. & Weber, D. J. Guideline for Disinfection and Sterilization in Healthcare Facilities, 2008. [4.] Pincus, D. H. in Encyclopedia of Rapid Microbiological Methods (2005).

A. B. Regberg↗
NASA NTRSDate not supplied

Saccade-Pursuit Coordination during Ocular Tracking across Different Impairment Sources

Purpose: Sleep loss and alcohol have been shown to impair smooth pursuit and its underlying visual motion processing in humans. This study examines the saccadic compensation for this poor pursuit. Methods: Using an established behavioral ocular-tracking paradigm (Liston & Stone, 2014, doi:10.1167/14.14.12), we examined the dose-response of ground lost (pursuit deficit integrated across our 300-ms steady-state tracking interval) and ground gained (increased saccadic response harnessed to compensate)across three separate studies – acute low-dose alcohol administration (LDA; n = 16 subjects), acute sleep loss(ASL; n = 12), and chronic sleep restriction (CSR; n = 12). We computed dose-responses as the linear regression slopes of ground lost and gained across treatment dose (% blood alcohol concentration [BAC] or hours awake). For the CSR study, we computed the mean effect for a single dose (5-hours nightly sleep for 1week). Results: For LDA, there was significantly increased ground lost (P < 0.001) and gained (P < 0.001) with increased %BAC. In addition, the dose-responses were not significantly different (P = 0.35), indicating effectively complete saccadic compensation due to significant increases in both saccadic rate (P < 0.05) and amplitude (P < 0.001). For ASL, there was significantly increased ground lost with time awake (P < 0.01),however ground gained was significantly lower (P < 0.001), indicating, at best, incomplete compensation due to a significant increase in saccadic rate (P < 0.001) but not amplitude (P = 0.10). With CSR, pursuit was again significantly impaired (P < 0.05), with saccadic rate significantly increased (P < 0.05) but, surprisingly, amplitude was significantly decreased (P < 0.05), effectively eliminating ground gained (P = 0.90). Conclusions: Our analyses show that LDA, ASL, and CSR affect tracking differently, suggesting the involvement of different brain pathways. With LDA, the effect appears largely due to the cortical impairment of visual motion processing with largely healthy brainstem and mid-brain responses (driving effective saccadic compensation). ASL and CSR however appear to affect both cortical and sub-cortical pathways, with at best partial saccadic compensation. Lastly, CSR is associated with an additional compromise due to a maladaptive decrease in saccade amplitude.

saccade↗