Characterization of a Molecule Partially Confined at the Pore Mouth of a Zeotype
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Chemistry↗
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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Low Catalyst Loading Enhances Charge Accumulation for Photoelectrochemical Water Splitting
Abstract Solar water oxidation is a critical step in artificial photosynthesis. Successful completion of the process requires four holes and releases four protons. It depends on the consecutive accumulation of charges at the active site. While recent research has shown an obvious dependence of the reaction kinetics on the hole concentrations on the surface of heterogeneous (photo)electrodes, little is known about how the catalyst density impacts the reaction rate. Using atomically dispersed Ir catalysts on hematite, we report a study on how the interplay between the catalyst density and the surface hole concentration influences the reaction kinetics. At low photon flux, where surface hole concentrations are low, faster charge transfer was observed on photoelectrodes with low catalyst density compared to high catalyst density; at high photon flux and high applied potentials, where surface hole concentrations are moderate or high, slower surface charge recombination was afforded by low‐density catalysts. The results support that charge transfer between the light absorber and the catalyst is reversible; they reveal the unexpected benefits of low‐density catalyst loading in facilitating forward charge transfer for desired chemical reactions. It is implied that for practical solar water splitting devices, a suitable catalyst loading is important for maximized performance.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Evaluating the potential of disaggregated memory systems for HPC applications
Summary Disaggregated memory is a promising approach that addresses the limitations of traditional memory architectures by enabling memory to be decoupled from compute nodes and shared across a data center. Cloud platforms have deployed such systems to improve overall system memory utilization, but performance can vary across workloads. High‐performance computing (HPC) is crucial in scientific and engineering applications, where HPC machines also face the issue of underutilized memory. As a result, improving system memory utilization while understanding workload performance is essential for HPC operators. Therefore, learning the potential of a disaggregated memory system before deployment is a critical step. This paper proposes a methodology for exploring the design space of a disaggregated memory system. It incorporates key metrics that affect performance on disaggregated memory systems: memory capacity, local and remote memory access ratio, injection bandwidth, and bisection bandwidth, providing an intuitive approach to guide machine configurations based on technology trends and workload characteristics. We apply our methodology to analyze thirteen diverse workloads, including AI training, data analysis, genomics, protein, fusion, atomic nuclei, and traditional HPC bookends. Our methodology demonstrates the ability to comprehend the potential and pitfalls of a disaggregated memory system and provides motivation for machine configurations. Our results show that eleven of our thirteen applications can leverage injection bandwidth disaggregated memory without affecting performance, while one pays a rack bisection bandwidth penalty and two pay the system‐wide bisection bandwidth penalty. In addition, we also show that intra‐rack memory disaggregation would meet the application's memory requirement and provide enough remote memory bandwidth.
Ding, Nan↗
An optimized ChIP-Seq framework for profiling histone modifications in Chromochloris zofingiensis
The eukaryotic green alga Chromochloris zofingiensis is a reference organism for studying carbon partitioning and a promising candidate for the production of biofuel precursors. Recent transcriptome profiling transformed our understanding of its biology and generally algal biology, but epigenetic regulation remains understudied and represents a fundamental gap in our understanding of algal gene expression. Chromatin immunoprecipitation followed by deep sequencing (ChIP-Seq) is a powerful tool for the discovery of such mechanisms, by identifying genome-wide histone modification patterns and transcription factor-binding sites alike. Here, we established a ChIP-Seq framework for Chr. zofingiensis yielding over 20 million high-quality reads per sample. The most critical steps in a ChIP experiment were optimized, including DNA shearing to obtain an average DNA fragment size of 250 bp and assessment of the recommended formaldehyde concentration for optimal DNA-protein cross-linking. We used this ChIP-Seq framework to generate a genome-wide map of the H3K4me3 distribution pattern and to integrate these data with matching RNA-Seq data. In line with observations from other organisms, H3K4me3 marks predominantly transcription start sites of genes. Our H3K4me3 ChIP-Seq data will pave the way for improved genome structural annotation in the emerging reference alga Chr. zofingiensis.
59 BASIC BIOLOGICAL SCIENCES↗
Deep Learning‐Assisted Automated Single Cell Electroporation Platform for Effective Genetic Manipulation of Hard‐to‐Transfect Cells
Abstract Genome engineering of cells using CRISPR/Cas systems has opened new avenues for pharmacological screening and investigating the molecular mechanisms of disease. A critical step in many such studies is the intracellular delivery of the gene editing machinery and the subsequent manipulation of cells. However, these workflows often involve processes such as bulk electroporation for intracellular delivery and fluorescence activated cell sorting for cell isolation that can be harsh to sensitive cell types such as human‐induced pluripotent stem cells (hiPSCs). This often leads to poor viability and low overall efficacy, requiring the use of large starting samples. In this work, a fully automated version of the nanofountain probe electroporation (NFP‐E) system, a nanopipette‐based single‐cell electroporation method is presented that provides superior cell viability and efficiency compared to traditional methods. The automated system utilizes a deep convolutional network to identify cell locations and a cell‐nanopipette contact algorithm to position the nanopipette over each cell for the application of electroporation pulses. The automated NFP‐E is combined with microconfinement arrays for cell isolation to demonstrate a workflow that can be used for CRISPR/Cas9 gene editing and cell tracking with potential applications in screening studies and isogenic cell line generation.
59 BASIC BIOLOGICAL SCIENCES↗
Fitting a deep generative hadronization model
Hadronization is a critical step in the simulation of high-energy particle and nuclear physics experiments. As there is no first principles understanding of this process, physically-inspired hadronization models have a large number of parameters that are fit to data. Deep generative models are a natural replacement for classical techniques, since they are more flexible and may be able to improve the overall precision. Proof of principle studies have shown how to use neural networks to emulate specific hadronization when trained using the inputs and outputs of classical methods. However, these approaches will not work with data, where we do not have a matching between observed hadrons and partons. In this paper, we develop a protocol for fitting a deep generative hadronization model in a realistic setting, where we only have access to a set of hadrons in data. Our approach uses a variation of a Generative Adversarial Network with a permutation invariant discriminator. We find that this setup is able to match the hadronization model in Herwig with multiple sets of parameters. This work represents a significant step forward in a longer term program to develop, train, and integrate machine learning-based hadronization models into parton shower Monte Carlo programs.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Low Noise Frequency-Domain Multiplexing of TES Bolometers Using SQUIDs at Sub-Kelvin Temperature
Digital Frequency-Domain Multiplexing (DfMux) is a technique that uses MHz superconducting resonators and Superconducting Quantum Interference Device (SQUID) arrays to read out sets of transition edge sensors. DfMux has been used by several Cosmic Microwave Background experiments, including most recently POLARBEAR-2 and SPT-3 G with multiplexing factors as high as 68, and is the baseline readout technology for the planned satellite mission LiteBIRD. Here, we present recent work focused on improving DfMux readout noise, reducing parasitic impedance, and improving sensor operation. We have achieved a substantial reduction in stray impedance by integrating the sensors, resonators, and SQUID array onto a single-carrier board operated at 250 mK. This also drastically simplifies the packaging of the cryogenic components and leads to better-controlled crosstalk. We demonstrate a low readout noise level of 8.6 pA/Hz1 1/2 , which was made possible by operating the SQUID array at a reduced temperature and with a low dynamic impedance. This is a factor of two improvement compared to the achieved readout noise level in currently operating Cosmic Microwave Background experiments using DfMux and represents a critical step toward maturation of the technology for the next generation of instruments.
47 OTHER INSTRUMENTATION↗
Chapter 4 - Pretreatment Technologies for Lignocellulosic Biomass Refineries
Pretreatment is a critical step in processing lignocellulosic biomass into biofuel and bioproducts and is considered the energy and cost center of the biomass conversion process. Although a large number of pretreatment technologies have been developed, not all the techniques are viable on a commercial scale at this stage. Moreover, the technology choice and process conditions depend highly on the type of biomass and the overall biorefinery scheme. This chapter provides an overview of different pretreatment methods, including their mechanism, important process parameters, current status, and challenges. The opportunities associated with new technologies and approaches are presented. Emphasis is placed on low-severity thermal pretreatment technologies. The chapter also provides a brief discussion of the challenges to achieving the economic viability of the technologies on a commercial scale.
BIOMASS FUELS↗
Thermochemical reduction modeling in a high-temperature moving-bed reactor for energy storage: 1D model
The design of robust and efficient high-temperature thermochemical reactors and determination of operating conditions are critical steps toward enabling high-efficiency long-duration solar energy storage. This work presents a computational model for the thermal reduction of a metal oxide material (Mg-Mn-O) up to 1450 °C and the coupled complex transport phenomena in a novel tubular thermal reactor design that features the capability for a high extent-of-reduction (high energy storage density) and inherent heat recuperation. A one-dimensional model coupling counter-current gas–solid flow, two-phase heat transfer, thermochemical redox reactions, and species transport in a moving-bed reactor is developed. Simplified versions of the model are validated with published results in the literature for packed beds with both inert and reactive particles; the fully coupled model is also validated with experimental measurements of a moving-bed reactor in terms of local temperatures and oxygen release at the exit. Detailed comparisons on the effects of different boundary conditions in the reaction zone (prescribed wall temperature vs. heat flux conditions) and formulations based on a simple uniform flow assumption vs. plug flow using Ergun equation for gas flow are investigated. The results are compared with experimental measurements, and for all cases, the energy flow components in the reactor system and the thermal to chemical conversion efficiency and overall system efficiency are computed. Finally, the predicted high thermal-to-chemical efficiency ~95% and system efficiency ~30% agree with experimental measurements.
25 ENERGY STORAGE↗
Scalable and compact magnetocaloric heat pump technology
Magnetocaloric heat pumping (MCHP) promises to be more efficient than traditional vapor compression while also eliminating the deleterious effects of gaseous refrigerants. While MCHP devices have shown the temperature spans and efficiencies needed for different heating and cooling applications, they struggle to become commercially viable due to their large size and mass, and resultant high cost. This paper evaluates a baseline MCHP device and explores methods to boost its system power density (SPD). The key components of the baseline system are the gadolinium packed-particle bed active magnetic regenerator (AMR) and a magnetic source composed of permanent magnets and high permeability magnetic steel. To enhance the SPD, the paper evaluates maximizing the AMR volume, opting for first-order magnetocaloric materials, optimizing the magnet and AMR geometry, and reducing the size of magnets and magnetic steel parts. At larger thermal powers, increasing the AMR diameter and the number of magnetic poles were evaluated. Using finite element models, solid models, and estimates of magnetocaloric material performance, thermal powers ranging from 37 W to 44 kW at a nominal 10 K temperature span were projected, and SPD was estimated to improve from 6 W/kg to 81 W/kg. Neglecting end effects, an upper limit of 114 W/g is estimated. Compared to SPD of off-the-shelf compressors with similar environment temperatures, MCHP power density using gadolinium is competitive up to roughly 200 W of cooling power. This is extended to 1 kW when using LaFeSi alloys and up to 3 kW in the limiting case. In conclusion, these results indicate that the performance and mass of MCHP can match that of compressors, which is a critical step toward cost-competitive magnetocaloric technology.
42 ENGINEERING↗
Molecular origin of viscoelasticity and influence of methylation in mesophase pitch
The viscoelastic and thermomechanical properties of pitches are responsible for their melt-spinning behavior, which is a critical step for manufacturing high-performance pitch-based carbon fibers. Here, we systematically explore the impact of methyl group modifications on the viscoelastic and thermal properties of mesophase pitches. We employ a range of atomistic modeling approaches, including Density Functional Theory (DFT), Density Functional Tight Binding (DFTB), and Classical Molecular Mechanics (MM), to provide detailed insights into the molecular interactions and structural changes. Further, our results revealed the molecular mechanisms that promote layered structures leading to the anisotropic nature of the viscoelastic behavior of mesophase pitch. Furthermore, we propose a modified molecular representation of naphthalene-based mesophase pitch based on the analysis of x-ray diffraction measurements. This study provides fundamental insights into the molecular structures of mesophase pitch and the role of methyl groups controlling its viscosity, which offer valuable insights into mesophase-based carbon fiber production.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Water-gas shift reaction in ceramic-carbonate dual-phase membrane reactor at high temperatures and pressures
Water-gas-shift (WGS) reaction is a critical step in integrated gasification combined cycles (IGCC) power plants with CO 2 capture. Membrane reactors made with a CO 2 -permselective ceramic-carbonate dual-phase (CCDP) membrane offers the potential to enhance hydrogen yield with simultaneous CO 2 capture for WGS reaction. The present work studies operation of WGS reaction in a tubular membrane reactor made of samarium-doped ceria infiltrated with lithium/sodium molten carbonate mixture. The WGS reaction was performed in the membrane reactor with and without a high-temperature WGS catalyst at 800–850 °C, feed pressure of 7 bar, the space velocity of 150–3000 h –1 , and a feed gas mixture of 45.7/13.1/41.3 mol% CO/CO 2 /N 2 with steam to carbon ratio of 4. The results show that the catalyst-free membrane reactor can convert 92% of carbon monoxide into CO 2 and H 2 and recover 29% CO 2 at 850 °C and a space velocity of 150 h –1 . However, in the catalyst-free membrane reactor, a significant amount of unwanted carbon deposition is observed. The side reactions can be minimized by reducing the operating pressure and increasing the operating temperature and space velocity, and completely avoided using a high-temperature catalyst at space velocity>500 h –1 . The membrane reactor with a WGS catalyst achieves CO conversion of about 85%, above the equilibrium conversion, and 40% CO 2 recovery without carbon deposition at high temperature and pressure. Finally, the membrane remains in the same structure and gas-tightness after the WGS reaction tests.
20 FOSSIL-FUELED POWER PLANTS↗
Synergistically combining peracetic acid and reduced graphene oxide membranes to degrade trace organic contaminants
The removal of trace organic contaminants is a critical step for the reuse of municipal and industrial wastewater. Herein, we demonstrate a catalytic membrane platform synergistically integrating reduced graphene oxide (rGO) membranes and peracetic acid (PAA) oxidation, using a dye of methylene blue (MB) and a pesticide of 2,4-dichlorophenoxyacetic acid (2,4-D) as model contaminants. In a crossflow system with rGO membrane and 25 ppm PAA, the degradation rates of MB and 2,4-D were 22 and 0.12 g h −1 per g rGO, with an initial concentration of 10 and 1.1 ppm, respectively. The degradation time profile of MB and 2,4-D follows a pseudo-first-order model, and the degradation rate constant increases with increasing initial PAA doses. Here, the rGO membranes also exhibited good stability over a 1-month test for 2,4-D degradation. In addition to the nanofiltration performance of the rGO membrane, the integrated PAA-rGO membrane process shows great potential to degrade various organic contaminants without the need to separate and recover the metal-free catalyst in downstream treatment.
2,4-D↗
Screening of transition metals for PFAS adsorption: A comparative DFT investigation
Transition metals are promising candidates for catalytic destruction of per- and polyfluoroalkyl substances (PFAS). This study employed density functional theory (DFT) calculations to systematically investigate the adsorption of PFAS, which is a critical step in the catalytic process, onto a group of transition metals, namely Cu, Pd, Pt, and Rh. The investigation considered the influence of different PFAS characteristics, including chain length, functional group (i.e., sulfonic vs. carboxylic), and protonation state (i.e., protonated, anionic, and deprotonated radical) on the adsorption mechanism. Overall, the findings indicated that the adsorption of PFAS on transition metals exhibited thermodynamically favorable energetics, with Rh showing the most favorable adsorption for PFAS. However, the adsorption strength was significantly dependent on the protonation state of PFAS. Cu was the highest electron donor, while Pt was the highest electron acceptor. Results were compared to experimental studies in the literature for qualitative validation.
Adsorption↗
Surrogate construction via weight parameterization of residual neural networks
Surrogate model development is a critical step for uncertainty quantification or other sample-intensive tasks for complex computational models. Here, in this work, we develop a multi-output surrogate form using a class of neural networks (NNs) that employ shortcut connections, namely Residual NNs (ResNets). ResNets are known to regularize the surrogate learning problem and improve the efficiency and accuracy of the resulting surrogate. Inspired by the continuous, Neural ODE analogy, we augment ResNets with weight parameterization strategy with respect to ResNet depth. Weight-parameterized ResNets regularize the NN surrogate learning problem and allow better generalization with a drastically reduced number of learnable parameters. We demonstrate that weight-parameterized ResNets are more accurate and efficient than conventional feed-forward multi-layer perceptron networks. We also compare various options for parameterization of the weights as functions of ResNet depth. We demonstrate the results on both synthetic examples and a large scale earth system model of interest.
97 MATHEMATICS AND COMPUTING↗
Motif-centric phosphoproteomics to target kinase-mediated signaling pathways
Identifying cellular phosphorylation pathways based on kinase-substrate relationships is a critical step to understanding the regulation of physiological functions in cells. Mass spectrometry-based phosphoproteomics workflows have made it possible to comprehensively collect information on individual phosphorylation sites in a variety of samples. However, there is still no generic approach to uncover phosphorylation networks based on kinase-substrate relationships in rare cell populations. Here, we describe a motif-centric phosphoproteomics approach combined with multiplexed isobaric labeling, in which in vitro kinase reactions are used to generate targeted phosphopeptides, which are spiked into one of the isobaric channels to increase detectability. Proof-of-concept experiments demonstrate selective and comprehensive quantification of targeted phosphopeptides by using multiple kinases for motif-centric channels. More than 7,000 tyrosine phosphorylation sites were quantified from several tens of micrograms of starting materials. This approach enables the quantification of multiple phosphorylation pathways under physiological or pathological regulation in a motif-centric manner.
59 BASIC BIOLOGICAL SCIENCES↗
Energy impact of heating electrification in mid-rise multifamily buildings in mixed-humid climates
Decarbonizing the electric grid in conjunction with electrifying residential heating is a critical step to combat climate change. Heating in multifamily buildings with the existing natural gas-fired central boiler is a complex process that not only leads to overheating in some apartment units but also results in energy waste and high gas bills. In this study, we consider a multifamily building in New York City, USA, to evaluate the performance of five different heating systems, which represent a step-by-step transition from the conventional to a fully electrified heating system, and determine their impact on the site energy consumption and source CO 2 emissions. Results indicate that overheating in a multifamily building can raise the indoor temperature by as much as 8°C above comfortable limits. Transitioning from conventional steam radiators to cold climate heat pumps can reduce annual site heating energy by up to 70% and source CO 2 emissions by up to 21%.
32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
Advances in building data management for building performance standards using the SEED platform
Reducing energy consumption and greenhouse gas emissions in the built environment is a critical step in achieving emission goals to mitigate climate change impacts. Local, federal, and international jurisdictions are deploying several methods to reduce energy and emissions such as voluntary and mandatory benchmarking and building performance standards, requiring building owners to reach energy and emission targets. Jurisdictions leveraging benchmarking and building performance standards require knowledge of the buildings covered; which is a large task due to staffing constraints, limited information on building characteristics and tax parcel data, and the need for advanced data management techniques to align datasets. This paper describes an open-source platform's recent advances to create consistent taxonomies, identify erroneous data, enable auditability, and track building performance. The paper concludes with two use cases on how the platform has been used by jurisdictions.
32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗