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At least 73 records · Page 4

Envisioned role of slit bypass pores in physical aging of carbon molecular sieve membranes

Carbon molecular sieve (CMS) hollow fibers remain a special class of rigid, molecular sieving membranes with unique scalability and excellent separation properties for challenging gas-pairs. These high-performing membranes are subject to moderate productivity losses and selectivity gains over time via a phenomenon typically referred to as physical aging. This article considers the role of slit bypass pores in physical aging as sensed by membrane property changes of CMS derived from aromatic polyimide precursors. Such pores are thought to be edge imperfections between adjacent ultramicroporous plates that may tighten over time, causing a reduction in penetrant diffusion coefficients. The envisioned mechanism leading to such slit bypass pores and their effects on penetrant transport are considered here from a fundamental perspective. Significantly, these slit bypass pores can be manipulated to suppress physical aging in CMS hollow fiber membranes, therefore enabling attractive long-term separation properties for multiple challenging applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

High-throughput enzyme screening platform for the IPP-bypass mevalonate pathway for isopentenol production

Isopentenol (or isoprenol, 3-methyl-3-buten-1-ol) is a drop-in biofuel and a precursor for commodity chemicals such as isoprene. Biological production of isopentenol via the mevalonate pathway has been optimized extensively in Escherichia coli , yielding 70% of its theoretical maximum. However, high ATP requirements and isopentenyl diphosphate (IPP) toxicity pose immediate challenges for engineering bacterial strains to overproduce commodities utilizing IPP as an intermediate. To overcome these limitations, we developed an “IPP-bypass” isopentenol pathway using the promiscuous activity of a mevalonate diphosphate decarboxylase (PMD) and demonstrated improved performance under aeration-limited conditions. However, relatively low activity of PMD toward the non-native substrate (mevalonate monophosphate, MVAP) was shown to limit flux through this new pathway. By inhibiting all IPP production from the endogenous non-mevalonate pathway, we developed a high-throughput screening platform that correlated promiscuous PMD activity toward MVAP with cellular growth. Successful identification of mutants that altered PMD activity demonstrated the sensitivity and specificity of the screening platform. Strains with evolved PMD mutants and the novel IPP-bypass pathway increased titers up to 2.4-fold. Further enzymatic characterization of the evolved PMD variants suggested that higher isopentenol titers could be achieved either by altering residues directly interacting with substrate and cofactor or by altering residues on nearby α-helices. These altered residues could facilitate the production of isopentenol by tuning either k cat or K i of PMD for the non-native substrate. The synergistic modification made on PMD for the IPP-bypass mevalonate pathway is expected to significantly facilitate the industrial scale production of isopentenol.

09 BIOMASS FUELS↗

Mechanistic Basis for the Bypass of a Bulky DNA Adduct Catalyzed by a Y-Family DNA Polymerase

1-Nitropyrene (1-NP), an environmental pollutant, induces DNA damage in vivo and is considered to be carcinogenic. The DNA adducts formed by the 1-NP metabolites stall replicative DNA polymerases but are presumably bypassed by error-prone Y-family DNA polymerases at the expense of replication fidelity and efficiency in vivo. Our running start assays confirmed that a site-specifically placed 8-(deoxyguanosin-N 2 -yl)-1-aminopyrene (dG 1,8 ), one of the DNA adducts derived from 1-NP, can be bypassed by Sulfolobus solfataricus DNA polymerase IV (Dpo4), although this representative Y-family enzyme was paused strongly by the lesion. Pre-steady-state kinetic assays were employed to determine the low nucleotide incorporation fidelity and establish a minimal kinetic mechanism for the dG 1,8 bypass by Dpo4. To reveal a structural basis for dCTP incorporation opposite dG 1,8 , we solved the crystal structures of the complexes of Dpo4 and DNA containing a templating dG 1,8 lesion in the absence or presence of dCTP. The Dpo4·DNA-dG 1,8 binary structure shows that the aminopyrene moiety of the lesion stacks against the primer/template junction pair, while its dG moiety projected into the cleft between the Finger and Little Finger domains of Dpo4. In the Dpo4·DNA-dG 1,8 ·dCTP ternary structure, the aminopyrene moiety of the dG 1,8 lesion, is sandwiched between the nascent and junction base pairs, while its base is present in the major groove. Moreover, dCTP forms a Watson–Crick base pair with dG, two nucleotides upstream from the dG 1,8 site, creating a complex for “-2” frameshift mutation. Mechanistically, these crystal structures provide additional insight into the aforementioned minimal kinetic mechanism.

59 BASIC BIOLOGICAL SCIENCES↗

Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions

In human cells, the oxidative DNA lesion 8,5'-cyclo-2'-deoxyadenosine (CydA) induces prolonged stalling of RNA polymerase II (Pol II) followed by transcriptional bypass, generating both error-free and mutant transcripts with AMP misincorporated immediately downstream from the lesion. Here, we present biochemical and crystallographic evidence for the mechanism of CydA recognition. Pol II stalling results from impaired loading of the template base (5') next to CydA into the active site, leading to preferential AMP misincorporation. Such predominant AMP insertion, which also occurs at an abasic site, is unaffected by the identity of the 5´-templating base, indicating that it derives from nontemplated synthesis according to an A rule known for DNA polymerases and recently identified for Pol II bypass of pyrimidine dimers. Subsequent to AMP misincorporation, Pol II encounters a major translocation block that is slowly overcome. The translocation block combined with the poor extension of the dA.rA mispair reduce transcriptional mutagenesis. Moreover, increasing the active-site flexibility by mutation in the trigger loop, which increases the ability of Pol II to accommodate the bulky lesion, and addition of transacting factor TFIIF facilitate CydA bypass. Thus, blocking lesion entry to the active site, trans-lesion A rule synthesis, and translocation block are common features of transcription across different bulky DNA lesions.

59 BASIC BIOLOGICAL SCIENCES↗

Bypass of the Major Alkylative DNA Lesion by Human DNA Polymerase η

A wide range of endogenous and exogenous alkylating agents attack DNA to generate various alkylation adducts. N7-methyl-2-deoxyguanosine (Fm7dG) is the most abundant alkylative DNA lesion. If not repaired, Fm7dG can undergo spontaneous depurination, imidazole ring-opening, or bypass by translesion synthesis DNA polymerases. Human DNA polymerase η (polη) efficiently catalyzes across Fm7dG in vitro, but its structural basis is unknown. Herein, we report a crystal structure of polη in complex with templating Fm7dG and an incoming nonhydrolyzable dCTP analog, where a 2'-fluorine-mediated transition destabilization approach was used to prevent the spontaneous depurination of Fm7dG. The structure showed that polη readily accommodated the Fm7dG:dCTP base pair with little conformational change of protein and DNA. In the catalytic site, Fm7dG and dCTP formed three hydrogen bonds with a Watson–Crick geometry, indicating that the major keto tautomer of Fm7dG is involved in base pairing. The polη-Fm7dG:dCTP structure was essentially identical to the corresponding undamaged structure, which explained the efficient bypass of the major methylated lesion. Overall, the first structure of translesion synthesis DNA polymerase bypassing Fm7dG suggests that in the catalytic site of Y-family DNA polymerases, small N7-alkylguanine adducts may be well tolerated and form the canonical Watson–Crick base pair with dCTP through their keto tautomers.

X-ray crystallography↗

Dynamic response of a Mach 2.5 axisymmetric inlet and turbojet engine with a poppet-value controlled inlet stability bypass system when subjected to internal and external airflow transients

The throat of a Mach 2.5 inlet that was attached to a turbojet engine was fitted with a poppet-valve-controlled stability bypass system that was designed to provide a large, stable airflow range. Propulsion system response and stability bypass performance were determined for several transient airflow disturbances, both internal and external. Internal airflow disturbances included reductions in overboard bypass airflow, power lever angle, and primary-nozzle area as well as compressor stall. For reference, data are also included for a conventional, fixed-exit bleed system. The poppet valves greatly increased inlet stability and had no adverse effects on propulsion system performance. Limited unstarted-inlet bleed performance data are presented.

Sanders, B. W.↗

The application of turbine bypass engines to high performance V/STOL aircraft

A study of the application of the turbine bypass engine (TBE) concept to high-performance V/STOL aircraft is in progress. The study is designed to identify the most promising TBE cycles for combination with a remote augmentor lift system (RALS), and to compare them with conventional turbofan RALS and lift-plus-lift/cruise concepts. Three cycles chosen for study are 15- and 30-percent-bypass-bleed TBE with simple RALS and 15-percent-bypass-bleed TBE with a turbo-compressor-RALS combination. Aircraft configurations were developed for the 15-percent-bleed TBE with simple and turbocompressor RALS and sized to a naval, supersonic, deck-launched, intercept mission. Early sizing results indicate that these two concepts give comparable airplane performance, although the simple RALS configuration has some potential design drawbacks that are avoided in the turbo-compressor RALS design.

Sheridan, A. E.↗

Bypass transition to turbulence and research Desiderata

Bypass transitions are seldom mentioned in texts or meetings on instability and transition to wall turbulence. The nature of a number of bypass transitions is illustrated by example. Until this characteristics is truly understood predicting transition on the basis of theory or statistically inadequate correlations (as they all are) entails risks that should be considered in justifying any design involving transition. A historical overview of bypass transition identified on blunt bodies is given.

Morkovin, M. V.↗

Evaluation of a Stirling engine heater bypass with the NASA Lewis nodal-analysis performance code

In support of the U.S. Department of Energy's Stirling Engine Highway Vehicle Systems program, the NASA Lewis Research Center investigated whether bypassing the P-40 Stirling engine heater during regenerative cooling would improve engine performance. The Lewis nodal-analysis Stirling engine computer simulation was used for this investigation. Results for the heater-bypass concept showed no significant improvement in the indicated thermal efficiency for the P-40 Stirling engine operating at full-power and part-power conditions. Optimizing the heater tube length produced a small increase in the indicated thermal efficiency with the heater-bypass concept.

Sullivan, T. J.↗

Bearing-bypass loading on bolted composite joints

The effects of simultaneous bearing and bypass loading on a graphite-epoxy (T300/5208) laminate were investigated. Onset damage and ultimate strengths were determined for each test case. A finite element stress analysis was conducted for each test case. The computed local stresses were used with appropriate failure criteria to analyze the observed failure modes and strengths. An unexpected interaction of the effect of the bypass and bearing loads was found for the onset of compression reacted bearing damage. The interaction was caused by a decrease in the bolt-hole contact arc and a corresponding increase in the severity of the bearing loads. The amount of bolt-hole contact had a significant effect on local stresses and, thus, on the calculated damage-onset and ultimate strengths. An offset-compression failure mode was identified for laminate failure under compression bearing-bypass loading.

Crews, J. H., Jr.↗

Stress analysis method for clearance-fit joints with bearing-bypass loads

A simple direct stress analysis method is proposed for a laminate with a clearance-fit fastener subjected to combined bearing and bypass loads in tension or compression, including bearing and bypass loads on bolt-hole contact and local stresses. The approach uses a linear-elastic finite element analysis with an inverse formulation; conditions along the bolt-hole interface are specified by constraint equations that limit nodal displacements to a circular arc corresponding to the bolt diameter. The application of the method to the analysis of the effects of bearing-bypass loading on bolt-hole contact angles and local stresses, with the plate material properties representing a quasi-isotropic T300/5208 graphite/epoxy laminate, is discussed.

Naik, R. A.↗

Bypass transition in boundary layers including curvature and favorable pressure gradient effects

Recent studies of 2-D boundary layers undergoing bypass transition were reviewed. Bypass transition is characterized by the sudden appearance of turbulent spots in boundary layer without first the regular, observable growth of disturbances predicted by linear stability theory. There are no standard criteria or parameters for defining bypass transition, but it is known to be the mode of transition when the flow is disturbed by perturbations of sufficient amplitude.

Volino, R. J.↗

Comparison of turbine bypass and mixed flow turbofan engines for a high-speed civil transport

A comparison of the turbine bypass engine and the mixed flow turbofan for a Mach 2.4 cruise application is presented. A parametric assessment is conducted for each cycle. Parameters that are investigated for the turbine bypass engine include design bypass, combustor exit temperature, and overall pressure ratio. Parameters that are investigated for the mixed flow turbofan include fan pressure ratio, mixer design pressure ratio, and combustor exit temperature. The engines are analyzed for a 5000-nautical-mile, all supersonic cruise mission to determine the aircraft takeoff gross weights. The effects of takeoff noise, cruise emissions, the addition of subsonic cruise legs, and constrained supersonic cruise altitudes are also evaluated.

Seidel, Jonathan A.↗

RNG in turbulence and modeling of bypass transition

Two projects are considered: the Renormalization Group (RNG) analysis of turbulence modeling, and the calculation of bypass transition through turbulence modeling. RNG is a process which eliminates small scales on the uneliminated large scales as the change in the transport properties. It is because of this property of RNG that it was previously suggested that RNG could be used as a model builder in turbulence modeling. The possibility is studied of constructing RNG based turbulence models, and to try to proceed to do the modeling through RNG in parallel with the classical approach. The numerical predictions made by RNG models and by classical models is compared against data from Direct Numerical Simulation. While in an environment with freestream turbulence, the transition initiated by the instability of the laminar boundary layer to Tollmien-Schlichting waves is found to be a bypass one in which turbulent spots are formed without T-S wave amplification. The formation is a random process, and flow within a turbulent spot is almost fully turbulent. This suggests the possibility of using turbulence modeling to describe and predict the bypass transition.

Yang, Zhigang↗

Low-Voltage Bypass Device

Improved bypass device provides low-resistance current shunt around low-voltage power cell when cell fails in open-circuit condition during operation. In comparison with older bypass devices for same application, this one weighs less, generates less heat, and has lower voltage drop (less resistance). Bypass device connected in parallel with power cell. Draws very little current during normal operation of cell.

Wilson, J. P.↗

A Modified Through-Flow Wave Rotor Cycle with Combustor Bypass Ducts

A wave rotor cycle is described which avoids the inherent problem of combustor exhaust gas recirculation (EGR) found in four-port, through-flow wave rotor cycles currently under consideration for topping gas turbine engines. The recirculated hot gas is eliminated by the judicious placement of a bypass duct which transfers gas from one end of the rotor to the other. The resulting cycle, when analyzed numerically, yields an absolute mean rotor temperature 18% below the already impressive value of the conventional four-port cycle (approximately the turbine inlet temperature). The absolute temperature of the gas leading to the combustor is also reduced from the conventional four-port design by 22%. The overall design point pressure ratio of this new bypass cycle is approximately the same as the conventional four-port cycle. This paper will describe the EGR problem and the bypass cycle solution including relevant wave diagrams. Performance estimates of design and off-design operation of a specific wave rotor will be presented. The results were obtained using a one-dimensional numerical simulation and design code.

Paxson Daniel E.↗

Thermodynamic Cycle Analysis of Magnetohydrodynamic-Bypass Airbreathing Hypersonic Engines

Established analyses of conventional ramjet/scramjet performance characteristics indicate that a considerable decrease in efficiency can be expected at off-design flight conditions. This can be explained, in large part, by the deterioration of intake mass flow and limited inlet compression at low flight speeds and by the onset of thrust degradation effects associated with increased burner entry temperature at high flight speeds. In combination, these effects tend to impose lower and upper Mach number limits for practical flight. It has been noted, however, that Magnetohydrodynamic (MHD) energy management techniques represent a possible means for extending the flight Mach number envelope of conventional engines. By transferring enthalpy between different stages of the engine cycle, it appears that the onset of thrust degradation may be delayed to higher flight speeds. Obviously, the introduction of additional process inefficiencies is inevitable with this approach, but it is believed that these losses are more than compensated through optimization of the combustion process. The fundamental idea is to use MHD energy conversion processes to extract and bypass a portion of the intake kinetic energy around the burner. We refer to this general class of propulsion system as an MHD-bypass engine. In this paper, we quantitatively assess the performance potential and scientific feasibility of MHD-bypass airbreathing hypersonic engines using ideal gasdynamics and fundamental thermodynamic principles.

Litchford, Ron J.↗

Thermodynamic Cycle Analysis of Magnetohydrodynamic-Bypass Hypersonic Airbreathing Engines

The prospects for realizing a magnetohydrodynamic (MHD) bypass hypersonic airbreathing engine are examined from the standpoint of fundamental thermodynamic feasibility. The MHD-bypass engine, first proposed as part of the Russian AJAX vehicle concept, is based on the idea of redistributing energy between various stages of the propulsion system flow train. The system uses an MHD generator to extract a portion of the aerodynamic heating energy from the inlet and an MHD accelerator to reintroduce this power as kinetic energy in the exhaust stream. In this way, the combustor entrance Mach number can be limited to a specified value even as the flight Mach number increases. Thus, the fuel and air can be efficiently mixed and burned within a practical combustor length, and the flight Mach number operating envelope can be extended. In this paper, we quantitatively assess the performance potential and scientific feasibility of MHD-bypass engines using a simplified thermodynamic analysis. This cycle analysis, based on a thermally and calorically perfect gas, incorporates a coupled MHD generator-accelerator system and accounts for aerodynamic losses and thermodynamic process efficiencies in the various engin components. It is found that the flight Mach number range can be significantly extended; however, overall performance is hampered by non-isentropic losses in the MHD devices.

Litchford, R. J.↗