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At least 73 records · Page 4

An FPGA-based hardware accelerator supporting sensitive sequence homology filtering with profile hidden Markov models

Abstract Background Sequence alignment lies at the heart of genome sequence annotation. While the BLAST suite of alignment tools has long held an important role in alignment-based sequence database search, greater sensitivity is achieved through the use of profile hidden Markov models (pHMMs). Here, we describe an FPGA hardware accelerator, called HAVAC, that targets a key bottleneck step (SSV) in the analysis pipeline of the popular pHMM alignment tool, HMMER. Results The HAVAC kernel calculates the SSV matrix at 1739 GCUPS on a $$\sim$$ ∼ $3000 Xilinx Alveo U50 FPGA accelerator card, $$\sim$$ ∼ 227× faster than the optimized SSV implementation in nhmmer . Accounting for PCI-e data transfer data processing, HAVAC is 65× faster than nhmmer’s SSV with one thread and 35× faster than nhmmer with four threads, and uses $$\sim$$ ∼ 31% the energy of a traditional high end Intel CPU. Conclusions HAVAC demonstrates the potential offered by FPGA hardware accelerators to produce dramatic speed gains in sequence annotation and related bioinformatics applications. Because these computations are performed on a co-processor, the host CPU remains free to simultaneously compute other aspects of the analysis pipeline.

59 BASIC BIOLOGICAL SCIENCES↗

Rapid Analyses of Sparse Seismoacoustic Data Reveals the Timing and Size of the Accurate Energetic Systems Explosion

On 10 October 2025 an explosion occurred at a facility operated by Accurate Energetic Systems in Humphreys County, Tennessee. The incident resulted in 16 fatalities and created a debris field over several square kilometers. To address remaining questions about explosion timing and size, we collected about 20 seismic and 19 acoustic records of the blast from sensors up to hundreds of kilometers away. We then deployed 10 distinct physics-based, reduced order models (ROMs) that used validated geological structure and atmospheric conditions from the time of the event, along with observations of body- and surface-wave energy, as well as acoustic overpressure and phase duration. Each ROM predicted either timing, yield estimates, or both. We binned these estimates and their uncertainties according to each ROMs’ assumptions about confinement (aboveground, buried fully coupled, and buried partially coupled) and combined these estimates with other forensic data to conclude that the event occurred as a single, aboveground explosion on 10 December 2025 12:47:50.8 ±0.1 s with a yield equivalent to 11.8 [2.3,16.5] tons of Trinitrotoluene. Our estimates align with the Bureau of Alcohol, Tobacco, Firearms and Explosives inventory reports of 11–13 tons. This multimethod approach demonstrates the use of remotely observed geophysical data to rapidly aid conventional forensic investigations of accidental explosions.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Decarbonization of the Iron and Steel Sector: Challenges and Opportunities

The iron and steel industry is one of the largest contributors to industrial emissions in the United States (U.S.). As this industry represents an impactful opportunity for industrial decarbonization, this paper presents the techno-economics of retrofitting iron/steel plants in the U.S. with post-combustion carbon dioxide (CO2) capture technology. For a representative base plant, this analysis considers an integrated steel mill, including a blast furnace (BF) and basic oxygen furnace (BOF), and evaluates CO2 capture as applied to the three largest and highest concentration emission sources of these facilities. A levelized cost of CO2 captured (LCOC) of $80.3/tonne CO2 and $80.7/tonne CO2 was estimated for a retrofit site with 99 and 90 percent capture, respectively.

Henry, Samuel [NETL Site Support Contractor, Natio↗

Highly Permeable Rubbery Thin Film Composite Membranes for CO2 Capture from Steel Mills

This presentation will report the rational design and fabrication of NETL’s highly permeable non-aging thin film composite (TFC) membranes for CO2 capture from various industrial point sources. This talk will also cover the design, computational fluid dynamic simulation, 3D printing, and permeation testing of plate-and-frame membrane modules for an upcoming field demonstration at U. S. Steel’s Edgar Thomson Plant in Braddock, PA. The field test will demonstrate membrane-based CO2 capture from a blast furnace for decarbonization of steel manufacturing for the first time in the U.S. A mobile gas permeation test unit is currently under design and construction for the field test, which is scheduled to take place in 2025.

Zhu, Lingxiang↗

Small arms suppression project (LLNL final report)

US Special Operations Command (USSOCOM) was seeking a technological leap in small firearms weapon suppressor technology, because anticipated enemy capabilities are requiring the operators to have smaller detection cross sections to ensure the safe execution of missions. Suppressors have been developed almost exclusively through trial-and-error methods since the time of the original design by Hiram Maxim over one hundred years ago. Consequently USSOCOM deemed it prudent to perform a physicsbased study of weapon suppression to understand performance limits and possibly identify breakthrough technologies. Lawrence Livermore National Laboratory’s (LLNL’s) high performance production level computational tool called ALE3D (Arbitrary Lagrangian-Eulerian 3D and 2D) has unique physics models and numerical algorithms for modeling suppressor dynamics. The flexible and extendable code framework supports fully integrated hydrodynamics, heat transfer, solid and fluid dynamics, and chemistry that can be applied to simulating propellant-driven motion of a bullet down a gun barrel, the transfer of heat from the burning propellant to the barrel and suppressor, the chemistry of muzzle flash, and the shock/acoustic/optical signatures in the near-field. LLNL’s originally anticipated role was to augment ALE3D for this task, by developing the software and analysis methodologies specific to the simulation of blast and muzzle flash phenomena. It was believed that insights provided by our ALE3D simulations in tandem with a coordinated experimental component by our other team members from Oak Ridge National Laboratory (ORNL) and the U. S. Army Armament, Research, Development and Engineering Center (ARDEC), would have excellent prospects of yielding useful suppressor design improvements that could be transitioned to industry and utilized by US Special Operations Command. The three year effort has come to fruition with the development of revolutionary suppressor designs that far outperform any previous or current design by anyone outside this multi-lab team.

42 ENGINEERING↗

Sierra/SolidMechanics 5.20 ITAR Users' Guide: Addendum for Shock Capabilities

This is an addendum to the Sierra/SolidMechanics 5.20 User’s Guide that documents additional capabilities available only in alternate versions of the Sierra/SolidMechanics (Sierra/SM) code. These alternate versions are enhanced to provide capabilities that are regulated under the U.S. Department of State’s International Traffic in Arms Regulations (ITAR) export control rules. The ITAR regulated codes are only distributed to entities that comply with the ITAR export control requirements. The ITAR enhancements to Sierra/SM include material models with an energy-dependent pressure response (appropriate for very large deformations and strain rates) and capabilities for blast modeling. This document is an addendum only; the standard Sierra/SolidMechanics 5.20 User’s Guide should be referenced for most general descriptions of code capability and use.

97 MATHEMATICS AND COMPUTING↗

Sierra/SolidMechanics 5.22: ITAR Users Guide, Addendum for Shock Capabilities

This is an addendum to the Sierra/SolidMechanics 5.22 User’s Guide that documents additional capabilities available only in alternate versions of the Sierra/SolidMechanics (Sierra/SM) code. These alternate versions are enhanced to provide capabilities that are regulated under the U.S. Department of State’s International Traffic in Arms Regulations (ITAR) export control rules. The ITAR regulated codes are only distributed to entities that comply with the ITAR export control requirements. The ITAR enhancements to Sierra/SM include material models with an energy-dependent pressure response (appropriate for very large deformations and strain rates) and capabilities for blast modeling. This document is an addendum only; the standard Sierra/SolidMechanics 5.22 User’s Guide should be referenced for most general descriptions of code capability and use.

97 MATHEMATICS AND COMPUTING↗

Decarbonization of the Iron and Steel Sector: Challenges and Opportunities

With a global initiative to reduce greenhouse gas emissions, the iron & steel industry presents an impactful decarbonization opportunity. In the U.S., the iron & steel industry accounted for 4.8% of industrial CO2 emissions in 2019, or about 72 M tonnes of CO2. This poster presents on the techno-economics of retrofitting blast oxygen furnace (BOF) iron/steel plants in the U.S. with capture.

Hughes, Sydney↗

Sierra/SolidMechanics, ITAR Users Guide (V.5.24): Addendum for Shock Capabilities

This is an addendum to the Sierra/SolidMechanics 5.24 User’s Guide that documents additional capabilities available only in alternate versions of the Sierra/SolidMechanics (Sierra/SM) code. These alternate versions are enhanced to provide capabilities that are regulated under the U.S. Department of State’s International Traffic in Arms Regulations (ITAR) export control rules. The ITAR regulated codes are only distributed to entities that comply with the ITAR export control requirements. The ITAR enhancements to Sierra/SM include material models with an energy-dependent pressure response (appropriate for very large deformations and strain rates) and capabilities for blast modeling. This document is an addendum only; the standard Sierra/SolidMechanics 5.24 User’s Guide should be referenced for most general descriptions of code capability and use.

42 ENGINEERING↗

Evaluation of the Energy, Hygrothermal, and Thermal Capacity Performance of Cross-Laminated Timber

Cross-laminated timber (CLT) construction is gaining momentum in the US because it offers multiple advantages over traditional construction methods. Benefits that have received the most attention focus on constructability, the environment, and protection (e.g., blast resistance), although CLT construction is likely to offer other benefits, as well. Still, these have not been studied at length because such evaluations are costly, requiring long-term assessments in an actual building and specialized technical knowledge. Among the possible benefits, CLT construction likely provides a higher-performing building envelope. Using CLT panels to enclose a building means fewer joints in the opaque envelope than what is required in traditional stick-framed construction. Fewer joints mean fewer locations where the air- and water-resistive barrier (WRB) could be compromised; thus, a CLT building enclosure may require less maintenance and have a longer lifespan than a traditionally built structure because of fewer air and water leaks. In addition, CLT’s thermal mass moderates indoor temperatures, allowing the heating, ventilation, and air conditioning (HVAC) system to operate more efficiently during peak hours, reducing operational energy consumption throughout the lifetime of the CLT building (Salonvaara et al., 2022). Furthermore, more stable indoor temperatures can increase occupant comfort. The CLT’s thermal mass can also reduce energy costs by adjusting to utility time-of-use pricing without affecting occupant comfort. The ability of CLT buildings to bridge periods without HVAC operation prepares them for future grid interaction and provides a certain level of resilience against power outages. Researchers have attempted to quantify these benefits; however, their work is based on simplified simulations with numerous assumptions. To correctly understand the benefits, an actual building must be monitored. Therefore, information needs to be gathered on indoor and outdoor temperatures, HVAC energy consumption, thermostat setpoints, temperatures, and thermal transport in CLT components to comprehend how these parameters are affected by the CLT’s thermal mass. These data are needed to reduce the number of assumptions and calibrate simulation models to optimize HVAC controls to minimize overall energy consumption, reduce energy use and higher fees during peak demand, and maintain occupant comfort. Additionally, the calibrated simulation model allows the optimization exercise to be repeated in various US climates. Potential benefits can be tailored to buildings in various locations, and decisions can be made on where CLT construction could be most advantageous. Furthermore, monitoring and simulation results are needed to evaluate the durability of the CLT structures in different climates. This project’s researchers gathered information to help understand and quantify the benefits of CLT buildings concerning operational energy, moderated indoor temperatures, and comfort; the dynamic operation to provide grid services; and resilience in times of power outage. Through the corroboration of simulation models with real-world measurements, this study paves the way for extrapolating findings to other climatic zones and building typologies, thereby broadening the understanding of CLT’s multifaceted benefits and reinforcing its position as a material of choice in sustainable construction.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

LDR Inorganic Spiked Simulants in Pozzolan-Substituted Cast Stone for Hanford Pretreated Low-Activity Tank Waste

Pretreated Low Activity Waste (PTW/LAW) at the Hanford Site, is currently projected for disposition through a cementitious waste form. The current standard formulation, Cast Stone, uses Class F fly ash, blast furnace slag, and Portland cement. However, the future availability of Class F fly ash is uncertain, as many coal-fired power plants—the source of this byproduct—are being decommissioned or converted to natural gas. This issue has prompted research into identifying and evaluating suitable alternative materials to replace fly ash in the cementitious waste forms used by the Department of Energy (DOE). The Savannah River National Laboratory (SRNL) successfully identified four natural pozzolans for the replacement of Class F fly ash in the current Savannah River Site (SRS) low-level waste (LLW) form, Saltstone.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

STILGAR: Subsurface Models for Graymont Pleasant Gap Mine

The detection, location, and monitoring of underground structures are of great importance to national and global security. Tunnels and voids generate seismic signatures detectable at the surface, but using non-invasive seismic data to image near-surface presents several challenges in real-world applications. In this report, we describe the use of a dense surface seismic deployment to generate subsurface models of the Graymont Pleasant Gap mine - a single-layer mine with a complex structure embedded in a high-velocity P-wave limestone bedrock. Our approach consists of three key methods. We use P-wave arrival times from local blast events to perform a tomography inversion with the tomoTD method, constructing a P-wave velocity model of the subsurface. We model the layer above the mine using Rayleigh wave ellipticity and inversion techniques. We leverage ongoing anthropogenic activities to identify and locate noise sources both on the surface and within the subsurface. With this integrated approach we aim to overcome the challenges and enhance our ability to non-invasively characterize underground structures, contributing to improved seismic monitoring techniques.

58 GEOSCIENCES↗

Rapid Electrochemical Carburization of Mild Steel

Next-generation iron production generates iron with 0 wt.% C, in contrast to contemporary blast furnace production of iron with 1 - 5 wt.% C. This makes new iron feedstocks difficult to use as a drop-in replacement in current steelmaking. We report results of an emissions-negative approach of carburizing iron or mild steel using molten salt electrochemistry and CO2. Electrochemical carburization of mild steel via molten carbonate salt electrolyte and CO2 bubbling shows rapid carbide development tunable by applied electric potential. Mild steel rods, serving as the cathode, show pearlite development at the surface after exposure to applied voltage in a LiKCO3 molten carbonate salt bath at 715 degrees C. The thickness of the pearlitic layer could be varied by changing the applied potential, with a strong difference in microstructure observed between an applied potential of -1.8 V and -2.4 V. This rapid carburization has multiple applications for enhancing steel production by upgrading the carbon content of low-carbon feedstocks.

36 MATERIALS SCIENCE↗

Optical Test Bench (SYSM 5620 Final Report)

The National Ignition Facility (NIF) is a research facility that focuses on High Energy Density Science and Inertial Confinement Fusion. In the NIF, 192 laser beams are directed into a miniscule Target Capsule to generate an implosion – this is called a NIF Shot. Many NIF Users conduct experiments using different Targets and laser inputs to generate reactions that are of interest to the scientific community. Those reactions are monitored using various Target Diagnostic instruments, including Shot Time Photography – which provides crucial images of the Target as the implosion occurs. A subset of these NIF Users is less interested in the reaction itself and more interested in subjecting materials or devices to the intense environment that these reactions can create. Using the Target as a source of x-rays, neutrons, or blast loading for particular materials has been significant to the shock physics community and to those who work in extreme design spaces. However, the Material and Radiation Effects team – that performs these experiments on behalf of the NIF Users – has not been able to make good use of the existing Shot Time Photography Diagnostics. The STP cameras are focused on the Targets rather than the MRE Customers’ materials, the current system is not oriented to have a good view of the MRE Customers’ materials, and the cameras are limited in their capabilities (black and white, poor resolution, etc.). As MRE experiments increase in quantity and importance to the scientific community, the desire for visual monitoring of the experiments to substantiate models and inform other data is also rising.

42 ENGINEERING↗

Energy Requirements for Integration of Nuclear Reactors with Iron and Steel Plants

This report identifies energy needs of heavy energy users within the domestic iron and steel industry and suggests solutions for integrating nuclear energy. The iron and steel industry, composed of several types of plants which perform different processes with varied energy demands and vectors, is a heavy consumer of electric power and fossil fuels including coke and natural gas. Almost all major process temperatures exceed the temperatures of direct heat available from advanced reactors, and so electricity and hydrogen were considered instead. Reference units were adopted and estimated energy demands computed for the blast furnace (BF), direct reduced iron (DRI) unit, electric arc furnace (EAF), and reheat furnaces. By utilizing production capacity data from industry reports, the ranges of power demands were estimated, including for hydrogen production by high temperature steam electrolysis (HTSE). For the EAF and DRI unit, more detailed integration studies with thermodynamic modeling were also conducted and determined a possible solution with a specific reactor design and number of modules. Furthermore, because many unit processes are co-located, entire plants were considered by adding the energy demands of the unit processes to form four hypothetical reference plants. The range of power needs for the reference plants is compatible with multi-unit banks of microreactors at the low end, and would create a need for multiple larger-capacity SMRs at the high end (1 GWe plus 0.14 GWt). Although the overall power need at the high end is well-matched with one present-day large reactor offering (1.1 GWe), redundancy considerations may require a minimum of two reactors, potentially eliminating the single large reactor from consideration. Auxiliary or house loads would increase the reference plant estimates. Finally, the report provides total estimated energy needs under integration of all U.S. units of each process (BF, DRI, EAF, and reheat furnaces), representing a national potential for nuclear energy in the industry. U.S. iron and steel plants may be candidates for integration with nuclear reactors via electricity and hydrogen, and many sites have energy requirements that correspond well to the capacities of several advanced nuclear power designs.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Creation of Speed-of-Sound Inject Data for Technical Nuclear Forensics

Technical Nuclear Forensics (TNF) exercises simulate a detonation of a nuclear device within the United States, usually in a city. Speed-of-sound (SOS) phenomenology are the atmospheric overpressure and ground shock mechanical motions that are observed at over-pressure (air-blast and infrasound) and seismic sensors, respectively (Figure 1). Amplitudes of SOS data are related to the explosive yield (Kinney and Graham, 1985; Koper et al., 2002; Bonner et al., 2013ab; Ford et al., 2014, 2021; Templeton et al., 2018; Schnurr et al., 2020). Within the country, the United States Prompt Diagnostics System (USPDS) includes a network of geophysical sensors to capture such SOS signals. During the TNF exercise, the event data will be analyzed by the players who know nothing about the technical details of the source (e.g. location, yield, explosive). Specifically, they will use the Integrated Yield Determination Tool (IYDT) to estimate the yield and height-of-burst or depth-of-burial (HOB/DOB). The IYDT allows the user to measure features on the overpressure and seismic channels, evaluate the consistency of features and jointly estimate yield and HOB/DOB. For these exercises, SOS data are simulated for the location, emplacement and yield of the device and signals are propagated to the observing stations. This document describes the steps undertaken in the simulation, validation, preparation and verification of SOS signals for TNF exercises.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF↗

Bradyrhizobium sp. WCU1

Bradyrhizobium WCU1 was cultured from a bottle of Vienna-style lager produced in Mexico. Colonies were obtained from beer plated on R2A medium and were slow to grow. A subculture was isolated and BLAST analysis of the 16S rRNA placed it into the genus Bradyrhizobium, with four species matching it at 100% percent identity. These included B. embrapense, B. viridifuturi, B. septentrionale, and B. quebecense. Whole genome phylogenetic analysis identified the two closest relatives of Bradyrhizobium WCU1 to be B. erythrophlei and B. elkanii USDA 76, but at only 91.2 and 90.5% average nucleotide identity (ANI), respectively.

59 BASIC BIOLOGICAL SCIENCES↗

Tolumonas sp. WCU1

Tolumonas sp. WCU1 was cultured from Dicks Creek on the campus of Western Carolina University. Colonies were obtained from water plated on R2A medium. A subculture was isolated and BLAST analysis of the 16S rRNA placed it into the genus Tolumonas, with the highest match at 95.7% percent identity to T. osonensis. Whole genome phylogenetic analysis identified the three species in the genus of Tolumonas to be only 78.1 to 78.5% in average nucleotide identity (ANI). These species include T. auensis , T. osonensis, and T. lignilytica.

59 BASIC BIOLOGICAL SCIENCES↗