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At least 73 records · Page 4

Observations of heteroclinic bifurcations in resistive magnetohydrodynamic simulations of the plasma response to resonant magnetic perturbations

A class of topological magnetic island bifurcations that has not previously been observed in toroidal plasmas is described. Increasing an externally applied three-dimensional magnetic field in resistive magnetohydrodynamic simulations results in the asymmetric elongation of resonant island flux surfaces followed by a sequence of heteroclinic bifurcations. Here, these bifurcations produce new sets of hyperbolic-elliptic fixed points as predicted by the Poincaré-Birkoff fixed point theorem. Field line calculations verify that the new fixed points do not connect to those of the prebifurcated islands as required for heteroclinic bifurcations on a torus with winding numbers composed of common integer factors.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Bifurcations of axisymmetric plasma equilibrium in a tokamak

Bifurcation of solutions to the Grad–Shafranov-type equation for helically symmetric plasma near the threshold for tearing instability are analyzed. Quadratic and cubic nonlinearities were added to the linear dependence of the current density on the helical flux. Depending on the character of nonlinearity, two types of bifurcation can be observed, the “small” and the “large” ones. The small bifurcation is typical of cubic nonlinearity and reveals itself in the growth of the magnetic island from zero as the profile parameter increases above the instability threshold. The large bifurcation is typical of quadratic nonlinearity and causes jumplike formation of a large-scale magnetic island upon exceeding the instability threshold. As the profile parameter decreases below the instability threshold, the large-scale island continues to persist for some time (the hysteresis effect) and then suddenly disappears.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Efficient bifurcation and tabulation of multi-dimensional combustion manifolds using deep mixture of experts: An a priori study

This work describes and validates an approach for autonomously bifurcating turbulent combustion man-ifolds to divide regression tasks amongst specialized artificial neural networks (ANNs). This approach relies on the mixture of experts (MoE) framework, where each neural network is trained to be specialized in a given portion of the input space. The assignment of different input regions to the experts is determined by a gating network, which is a neural network classifier. In some previous studies, it has been demonstrated that bifurcation of a complex combustion manifold and fitting different ANNs for each part leads to better fits or faster inference speeds. However, the manner of bifurcation in these studies was based on heuristic approaches or clustering techniques. In contrast, the proposed technique enables automatic bifurcation using non-linear planes in high-dimensional turbulent combustion manifolds that are often associated with complex behavior due to different dominating physics in various zones. Furthermore, the proposed concept is validated using 4-dimensional (4D) and 5D flamelet tables, showing that the errors obtained with a given network size, or conversely the network size required to achieve a given accuracy, is considerably reduced. The effect of the number of experts on inference speed is also investigated, showing that by increasing the number of experts from 1 to 8, the inference time can be approximately reduced by a factor of two. Moreover, it is shown that the MoE approach divides the input manifold in a physically intuitive manner, suggesting that the MoE framework can elucidate high-dimensional datasets in a physically meaningful way.

42 ENGINEERING↗

Dynamics and bifurcations of laminar annular swirling and non-swirling jets

This paper presents bifurcation analyses characterising the nonlinear dynamics of fully developed laminar annular jets with respect to the centrebody diameter ${ {d}}$ , Reynolds number ${ {Re}}$ , and swirl ratio ${ {S}}$ . Similar flows appear in numerous applications and feature a vibrant range of topological and dynamical characteristics associated with phenomena including shear layer separation and vortex breakdown. Our results begin by describing the non-monotonic evolution of the axisymmetric jet's steady topology under varying ${ {S}}$ . In accord with earlier reports, the jet progresses through a sequence of wake, breakdown and wall jet regimes in a qualitatively similar manner across a wide span of ${ {d}}$ and ${ {Re}}$ values. In the wake regime, the non-swirling jet bifurcates to a plane-symmetric, but not axisymmetric, steady flow pattern beyond a ${ {d}}$ -dependent critical ${ {Re}}$ value. With further increase in ${ {Re}}$ , the steady non-swirling jet destabilises subsequently via multiple distinct Hopf bifurcations. Introducing ${ {S}}>0$ to the jet also induces unsteadiness by twisting the singly azimuthally periodic ( $|m|=1$ ) asymmetric wake structure and causing it to precess periodically in time about the central axis. Intermediate swirl stabilises this unsteady dynamics and restores the jet's axisymmetry. This stabilising effect is then reversed in the breakdown regime at higher ${ {S}}$ , where a variety of different $|m|=1$ and $|m|=2$ instabilities bifurcate from the steady flow as ${ {S}}$ is increased. Several instances of hysteresis and subcritical behaviour are reported and discussed, including one that manifests precessing vortex core oscillations.

Douglas, Christopher M. (ORCID:0000000259683315)↗

The Sagittarius stream in Gaia Early Data Release 3 and the origin of the bifurcations

The Sagittarius dwarf spheroidal (Sgr) is a dissolving galaxy being tidally disrupted by the Milky Way (MW). Its stellar stream still poses serious modelling challenges, which hinders our ability to use it effectively as a prospective probe of the MW gravitational potential at large radii. Our goal is to construct the largest and most stringent sample of stars in the stream with which we can advance our understanding of the Sgr-MW interaction, focusing on the characterization of the bifurcations. We improved on previous methods based on the use of the wavelet transform to systematically search for the kinematic signature of the Sgr stream throughout the whole sky in the Gaia data. We then refined our selection via the use of a clustering algorithm on the statistical properties of the colour-magnitude diagrams. Our final sample contains more than 700 000 candidate stars and is three times larger than previous Gaia samples. With it, we have been able to detect the bifurcation of the stream in both the northern and southern hemispheres, which requires four branches (two bright and two faint) to fully describe the system. We present the detailed proper motion distribution of the trailing arm as a function of the angular coordinate along the stream, showing, for the first time, the presence of a sharp edge (on the side of the small proper motions) beyond which there are no Sgr stars. We also characterize the correlation between kinematics and distance. Finally, the chemical analysis of our sample shows that the faint branch of the bifurcation is more metal poor than the bright. We provide analytical descriptions for the proper motion trends as well as for the sky distribution of the four branches of the stream. Based on our analysis, we interpret the bifurcations as a misaligned overlap of the material stripped at the antepenultimate pericentre (faint branches) with the stars ejected at the penultimate pericentre (bright branch), given that Sgr just went through its perigalacticon. The source of this misalignment is still unknown, but we argue that models with some internal rotation in the progenitor – at least during the time of stripping of the stars that are now in the faint branches – are worth exploring.

79 ASTRONOMY AND ASTROPHYSICS↗

Bifurcation of self-folded polygonal bilayers

Motivated by the self-assembly of natural systems, researchers have investigated the stimulus-responsive curving of thin-shell structures, which is also known as self-folding. Self-folding strategies not only offer possibilities to realize complicated shapes but also promise actuation at small length scales. Biaxial mismatch strain driven self-folding bilayers demonstrate bifurcation of equilibrium shapes (from quasi-axisymmetric doubly curved to approximately singly curved) during their stimulus-responsive morphing behavior. Being a structurally instable, bifurcation could be used to tune the self-folding behavior, and hence, a detailed understanding of this phenomenon is appealing from both fundamental and practical perspectives. In this work, we investigated the bifurcation behavior of self-folding bilayer polygons. For the mechanistic understanding, we developed finite element models of planar bilayers (consisting of a stimulus-responsive and a passive layer of material) that transform into 3D curved configurations. Our experiments with cross-linked Polydimethylsiloxane samples that change shapes in organic solvents confirmed our model predictions. Finally, we explored a design scheme to generate gripper-like architectures by avoiding the bifurcation of stimulus-responsive bilayers. Our research contributes to the broad field of self-assembly as the findings could motivate functional devices across multiple disciplines such as robotics, artificial muscles, therapeutic cargos, and reconfigurable biomedical devices.

36 MATERIALS SCIENCE↗

An electron-bifurcating “plug” to a protein nanowire in tungsten-dependent aldehyde detoxification

Members of the tungsten-containing oxidoreductase (WOR) family, which contain a tungstopyranopterin (Tuco) cofactor, are typically either monomeric (WorL) or heterodimeric (WorLS). These enzymes oxidize aldehydes to the corresponding acids while reducing the redox protein ferredoxin. They have been structurally characterized mainly using WORs from hyperthermophilic archaea. The WORs of some bacteria contain three additional subunits of the BfuABC family and these chimeric WorABCSL enzymes catalyze an electron-bifurcating reaction in which aldehyde oxidation is coupled to the simultaneous reduction of ferredoxin and nicotinamide adenine dinucleotide. In human gut microbes, electron bifurcation by WorABSL is proposed to enable the detoxification of aldehydes generated from cooked foods and in the tungstocentric production of beneficial short chain fatty acids from lactate, potentially impacting health. Herein we present the high-resolution cryogenic electron microscopy (cryo-EM) structure of the WorABCSL purified from the bacteriumAcetomicrobium mobile.The structure reveals a surprising 1:3 stoichiometry between WorABC and WorSL, with the WorSL units forming a nanowire-like architecture leading from three Tuco-containing catalytic sites in WorL via strings of multiple iron-sulfur clusters in WorS to a single bifurcating WorABC core. Our structure uncovers a distinct domain arrangement that links three Tuco-dependent aldehyde oxidation sites with the bifurcation process and potentially facilitates environmental aldehyde oxidation.

Science & Technology - Other Topics↗

Towards a classification of bifurcations in Vlasov equations

Here, we propose a classification of bifurcations of Vlasov equations, based on the strength of the resonance between the unstable mode and the continuous spectrum on the imaginary axis. We then identify and characterize a new type of generic bifurcation where this resonance is weak, but the unstable mode couples with a stable mode and a Casimir invariant of the system to form a size-3 Jordan block. We derive a three-dimensional reduced noncanonical Hamiltonian system describing this bifurcation. Comparison of the reduced dynamics with direct numerical simulations on a test case gives excellent agreement. We finally discuss the relevance of this bifurcation to specific physical situations.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Inflow/outflow boundary conditions for particle-based blood flow simulations: Application to arterial bifurcations and trees

When blood flows through a bifurcation, red blood cells (RBCs) travel into side branches at different hematocrit levels, and it is even possible that all RBCs enter into one branch only, leading to a complete separation of plasma and R- BCs. To quantify this phenomenon via particle-based mesoscopic simulations, we developed a general framework for open boundary conditions in multiphase flows that is effective even for high hematocrit levels. The inflow at the inlet is duplicated from a fully developed flow generated in a pilot simulation with periodic boundary conditions. The outflow is controlled by adaptive forces to maintain the flow rate and velocity gradient at fixed values, while the particles leaving the arteriole at the outlet are removed from the system. Upon valida- tion of this approach, we performed systematic 3D simulations to study plasma skimming in arterioles of diameters 20 to 32 microns. For a flow rate ratio 6:1 at the branches, we observed the \all-or-nothing" phenomenon with plasma only entering the low flow rate branch. We then simulated blood-plasma separation in arteriolar bifurcations with different bifurcation angles and same diameter of the daughter branches. Our simulations predict a significant increase in RBC flux through the main daughter branch as the bifurcation angle is increased. Lastly, we demonstrated the new methodology for simulating blood flow in ves- sels with multiple inlets and outlets, constructed using an angiogenesis model.

59 BASIC BIOLOGICAL SCIENCES↗

Bifurcation analysis of nonlinear stability of aircraft at high angles of attack

The problem of stability of steady flight of an aircraft flying at high angles of attack subject to finite-amplitude disturbances in pitch is studied using bifurcation theory, taking account of the interactions between the pitching motion and the unsteady flow. The aerodynamic responses to large-amplitude slow oscillations of the aircraft are obtained from that of infinitesimal amplitude case. Increasing the angle of attack past some critical angle for which the damping vanishes, the steady flight becomes unstable and Hopf bifurcation sets in, resulting in a periodic motion. A simple criterion in terms of the aerodynamic coefficients is given for determining the stability of the bifurcating period motion. For supersonic/hypersonic flat plate airfoils the bifurcating periodic motion is found to be unstable. This implies that when the angle of attack is increased past that of neutral damping, there will be drastic changes of the motion of the aircraft from its steady flight condition at the critical angle, including, e.g. hysteresis.

Hui, W. H.↗

Bifurcation analysis of aircraft pitching motions near the stability boundary

Bifuraction theory is used to analyze the nonlinear dynamic stability characteristics of an aircraft subject to single degree of freedom pitching-motion perturbations about a large mean angle of attack. The requisite aerodynamic information in the equations of motion is represented in a form equivalent to the response to finite-amplitude pitching oscillations about the mean angle of attack. This information is deduced from the case of infinitesimal-amplitude oscillations. The bifurcation theory analysis reveals that when the mean angle of attack is increased beyond a critical value at which the aerodynamic damping vanishes, new solutions representing finite-amplitude periodic motions bifurcate from the previously stable steady motion. The sign of a simple criterion, cast in terms of aerodynamic properties, determines whether the bifurcating solutions are stable (supercritical) or unstable (subcritical). For flat-plate airfoils flying at supersonic/hypersonic speed, the bifurcation is subcritical, implying either that exchanges of stability between steady and periodic motion are accompanied by hysteresis phenomena, or that potentially large aperiodic departures from steady motion may develop.

Hui, W. H.↗

A torus bifurcation theorem with symmetry

Hopf bifurcation in the presence of symmetry, in situations where the normal form equations decouple into phase/amplitude equations is described. A theorem showing that in general such degeneracies are expected to lead to secondary torus bifurcations is proved. By applying this theorem to the case of degenerate Hopf bifurcation with triangular symmetry it is proved that in codimension two there exist regions of parameter space where two branches of asymptotically stable two-tori coexist but where no stable periodic solutions are present. Although a theory was not derived for degenerate Hopf bifurcations in the presence of symmetry, examples are presented that would have to be accounted for by any such general theory.

Vangils, S. A.↗

Bifurcation analysis of axial flow compressor stability

With a one-mode truncation it is possible to reduce the Moore-Greitzer model for compressor instability to a set of three ordinary differential equations. These are approached from the point of view of bifurcation theory. Most of the bifurcations emerge from a degenerate Takens-Bogdanov bifurcation point. The bifurcation sets are completed using the numerical branch tracking scheme AUTO. Despite the severity of the truncation, the agreement with experimental results is excellent.

Mccaughan, F. E.↗

Bifurcation analysis of a simple analytic model of self-propagating star formation

We investigate the structure and stability of rotationally symmetric nonhomogeneous time-independent solutions derived from a simple analytic model of self-propagating star formation. For this purpose we employ two methodologies: We use bifurcation theoretical methods to prove the existence of nonhomogeneous axisymmetric stationary solutions of an appropriate nonlinear evolution equation for the stellar density. We show that the nonhomogeneous solution branch bifurcates from the homogeneous one at a critical parameter value of the star formation rate. Further, the analytical theory allows us to show that the new solution set is stable in the weakly nonlinear regime near the bifurcation point. To follow the solution branch further, we use numerical methods. The numerical calculation shows the structure and stability of these solutions. We conclude that no periodic time-dependent solutions of this special model exist, and no further bifurcations can be found. The same results have been found in simulations of stochastic self-propagating star formation based on similar models. Therefore, our findings provide a natural explanation, why long-lived large-scale structure have not been found in those simulations.

Neukirch, Thomas↗

Retinal ganglion cell projections to the hamster suprachiasmatic nucleus, intergeniculate leaflet, and visual midbrain: bifurcation and melanopsin immunoreactivity

The circadian clock in the suprachiasmatic nucleus (SCN) receives direct retinal input via the retinohypothalamic tract (RHT), and the retinal ganglion cells contributing to this projection may be specialized with respect to direct regulation of the circadian clock. However, some ganglion cells forming the RHT bifurcate, sending axon collaterals to the intergeniculate leaflet (IGL) through which light has secondary access to the circadian clock. The present studies provide a more extensive examination of ganglion cell bifurcation and evaluate whether ganglion cells projecting to several subcortical visual nuclei contain melanopsin, a putative ganglion cell photopigment. The results showed that retinal ganglion cells projecting to the SCN send collaterals to the IGL, olivary pretectal nucleus, and superior colliculus, among other places. Melanopsin-immunoreactive (IR) ganglion cells are present in the hamster retina, and some of these cells project to the SCN, IGL, olivary pretectal nucleus, or superior colliculus. Triple-label analysis showed that melanopsin-IR cells bifurcate and project bilaterally to each SCN, but not to the other visual nuclei evaluated. The melanopsin-IR cells have photoreceptive characteristics optimal for circadian rhythm regulation. However, the presence of moderately widespread bifurcation among ganglion cells projecting to the SCN, and projection by melanopsin-IR cells to locations distinct from the SCN and without known rhythm function, suggest that this ganglion cell type is generalized, rather than specialized, with respect to the conveyance of photic information to the brain. Copyright 2003 Wiley-Liss, Inc.

NASA Discipline Neuroscience↗

The role of thermodynamic features on the functional activity of electron bifurcating enzymes

Electron bifurcation is a biological mechanism to drive a thermodynamically unfavorable redox reaction through direct coupling with an exergonic reaction. This process allows microorganisms to generate high energy reducing equivalents in order to sustain life and is often found in anaerobic metabolism, where the energy economy of the cell is poor. Recent work has revealed details of the redox energy landscapes for a variety of electron bifurcating enzymes, greatly expanding the understanding of how energy is transformed by this unique mechanism. Here we highlight the plasticity of these emerging landscapes, what is known regarding their mechanistic underpinnings, and provide a context for interpreting their biochemical activity within the physiological framework. Here, we conclude with an outlook for propelling the field toward an integrative understanding of the impact of electron bifurcation.

59 BASIC BIOLOGICAL SCIENCES↗

H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle

Recent investigations into ferredoxin-dependent transhydrogenases, a class of enzymes responsible for electron transport, have highlighted the biological importance of flavin-based electron bifurcation (FBEB). FBEB generates biomolecules with very low reduction potential by coupling the oxidation of an electron donor with intermediate potential to the reduction of high and low potential molecules. Bifurcating systems can generate biomolecules with very low reduction potentials, such as reduced ferredoxin (Fd), from species such as NADPH. Metabolic systems that use bifurcation are more efficient and confer a competitive advantage for the organisms that harbor them. Structural models are now available for two NADH-dependent ferredoxin-NADP + oxidoreductase (Nfn) complexes. These models, together with spectroscopic studies, have provided considerable insight into the catalytic process of FBEB. However, much about the mechanism and regulation of these multi-subunit proteins remains unclear. Using hydrogen/deuterium exchange mass spectrometry (HDX-MS) and statistical coupling analysis (SCA), we identified in this work specific pathways of communication within the model FBEB system, Nfn from Pyrococus furiosus , under conditions at each step of the catalytic cycle. HDX-MS revealed evidence for allosteric coupling across protein subunits upon nucleotide and ferredoxin binding. SCA uncovered a network of co-evolving residues that can provide connectivity across the complex. Together, the HDX-MS and SCA data show that protein allostery occurs across the ensemble of iron-sulfur cofactors and ligand binding sites using specific pathways that connect domains allowing them to function as dynamically coordinated units.

59 BASIC BIOLOGICAL SCIENCES↗

Global properties and bifurcation analysis of an HIV-1 infection model with two target cells

In this paper, the authors consider a four-compartmental HIV epidemiological model, which describes the interaction between HIV virus and two target cells, CD4 T cells and macrophages in vivo. It is proved that the bilinear incidence can cause the backward bifurcation, where a locally asymptotically stable disease-free equilibrium co-exists with a locally asymptotically stable endemic equilibrium when the basic reproduction number (R{sub 0}) is less than unity. It is shown that a sequence of Hopf bifurcations occur at the endemic equilibrium by choosing one parameter of the model as the bifurcation parameter. Meanwhile, the global asymptotic stabilities of the equilibria are established by constructing suitable Lyapunov functions under some conditions. Furthermore, the authors develop an extended model by incorporating with the intracellular delays and derive global asymptotic stability of the delayed model by constructing Lyapunov functions. Some numerical simulations for justifying the theoretical analysis results are also given.

60 APPLIED LIFE SCIENCES↗