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Monthly averages of ED2 model simulations initialized with airborne lidar structure, Jan 1981-Dec 2018, Brazilian Amazon

Deforestation and forest degradation (selective logging, fires, fragmentation) have impacted nearly 40% of the original extent of the Brazilian Amazon, and have markedly impacted forest structure across the region. To date, few studies analysed how shifts in forest structure from degradation influence the forest sensitivity to climate extremes, because of the complex interactions between forest structure and micro-environmental conditions. To address this knowledge gap, we carried out a series of simulations across the Brazilian Amazon using the Ecosystem Demography Model (ED2), using observed forest structure derived from 541 airborne lidar transects (375 ha each) and two scenarios representing forest recovery and expansion of degradation to investigate how shifts in forest structure impact ecosystem function under near-average and extreme climate conditions, as part of the manuscript Longo et al 2025 "Degradation and Deforestation Increase the Sensitivity of the Amazon Forest to Climate Extremes". This dataset provides the output results from the ED2 model simulations for the three simulations at monthly time scales, in NetCDF format. For all simulations, we used bias-corrected hourly reanalyses (WFDE5) for most meteorological drivers, except for precipitation, which was obtained from CHIRPS. The meteorological drivers used in the study span 38 years (Jan 1981–Dec 2018). The output results correspond to the last 38 years of simulation (one full cycle of meteorological drivers), in which ED2 simulations used static stand structure (i.e., the forest structure was held constant). The following files are provided:ED2_emean_Global_R004_BrAmaz_s1c0t0l0f0.nc. This corresponds to the Control simulation. The forest structure was obtained from the airborne lidar.ED2_emean_Global_R005_BrAmaz_s1c0t1l1f0.nc. This corresponds to the Degraded simulation. The forest structure was obtained from a spin-up simulation initialized with airborne lidar and a scenario that expanded deforestation and selective logging across the Amazon.ED2_emean_Global_R006_BrAmaz_s1c0t1l0f0.nc. This corresponds to the Recovery simulation. The forest structure was obtained from a spin-up simulation initialized with airborne lidar and a scenario that completely halted deforestation and degradation, allowing degraded forests to recover for 38 years.We also provide file ED2_zones_R004_BrAmaz_s1c0t0l0f0.nc, which classifies each grid cell into zones used in the reference manuscript: 1: Southeast. 2: South. 3: West. 4: Central. 5: Northeast. 6: North. 7: Northwest". Index 0 corresponds to grid cells excluded from sub-region analyses because they were dominated by flooded forests, deforestation, and naturally non-forest vegetation.

54 ENVIRONMENTAL SCIENCES↗

Amazon windthrow disturbances are likely to increase with storm frequency under global warming: Data and Codes

This zipfile includes datasets and codes that were used to produce the results in the paper entitled Amazon windthrow disturbances are likely to increase with storm frequency under global warming. Datasets include: 1. Windthrow density across the entire Amazon - GIS shapefile format 2. Current ERA 5 mean afternoon convective available potential energy (CAPE) (1990-2019) - Remote Sensing TIFF format 3. Estimated future mean CAPE from 10 models in CMIP 6 (2070-2099) - Remote Sensing TIFF format 4. Python codes in jupyter notebook and processed datasets used to generate Fig.2a and Table 1 in the paper. You will need to use Jupyter Notebook and Python for accessing and reading the codes. Please contact Yanlei Feng (ylfeng@berkeley.edu) for any questions. Paper associated with this dataset: Feng, Y., Negrón-Juárez, R.I., Romps, D.M. and Chambers, J.Q., 2023. Amazon windthrow disturbances are likely to increase with storm frequency under global warming. Nature communications, 14(1), p.101.

54 ENVIRONMENTAL SCIENCES↗

Large Eddy Simulation of the Diurnal Cycle of Shallow Convection in the Central Amazon

Climate models often face challenges in accurately simulating the daily precipitation cycle over tropical land areas, particularly in the Amazon. One contributing factor may be the incomplete representation of the diurnal evolution of shallow cumulus (ShCu) clouds. This study aimed to enhance the understanding of the diurnal cycles of ShCu clouds—from formation to maturation and dissipation—over the Central Amazon (CAMZ). Using observational data from the Green Ocean Amazon 2014 (GoAmazon) campaign and large eddy simulation (LES) modeling, we analyzed the diurnal cycles of six selected pure ShCu cases and their composite behavior. Our results revealed a well-defined cycle, with cloud formation occurring between 10 and 11 local time (LT), maturity from 13 to 15 LT, and dissipation by 17–18 LT. The vertical extent of the liquid water mixing ratio and the intensity of the updraft mass flux were closely associated with increases in turbulent kinetic energy (TKE), enhanced buoyancy flux within the cloud layer, and reduced large-scale subsidence. We further analyzed the diurnal cycles of the convective available potential energy (CAPE), the convective inhibition (CIN), the Bowen ratio (BR), and the vertically integrated TKE in the mixed layer (ITKE-ML), exploring their relationships with the cloud base mass flux (Mb) and cloud depth across the six ShCu cases. ITKE-ML and Mb exhibited similar diurnal trends, peaking at approximately 14–15 LT. However, no consistent relationships were found between CAPE (or BR) and Mb. Similarly, comparisons of the cloud depth with CAPE, BR, ITKE-ML, CIN, and Mb revealed no clear relationships. Smaller ShCu clouds were sometimes linked to higher CAPE and lower CIN. It is important to emphasize that these findings are preliminary and based on a limited sample of ShCu cases. Further research involving an expanded dataset and more detailed analyses of the TKE budget and synoptic conditions is necessary. Such efforts would yield a more comprehensive understanding of the factors influencing ShCu clouds’ vertical development.

54 ENVIRONMENTAL SCIENCES↗

Sigma/deg/ signature of the Amazon rain forest obtained from the Seasat scatterometer

Scatterometer data from Seasat of the Amazon rain forest were examined to determine if the region is suitable to use as a reference for calibration of radars. The consistency of Skylab data viewing the Amazon region prompted the analyses, and the Seasat-A scatterometer system (SASS) gathered data of the same region at varying angles. The instrument employed a 100 W 14.6 GHz signal with the reflected power sampled 61 times during each 1.89 sec measurement period. Doppler filters were used in 15 parallel channels of reception, and represented areas 20 km by 50-70 km. Tests were made of regional and temporal stability of the Amazon area, with five measurement angles averaged at different incidence angles to find the mean deviation, which was found to be less than 0.5 dB. Diurnal effects were confined to early morning, and further tests are recommended to obtain results for an entire year, to develop screening methods for thick clouds and rain, and to determine the deviation more precisely.

Birrer, I. J.↗

Deforestation, floodplain dynamics, and carbon biogeochemistry in the Amazon Basin

Three aspects of the physical geographic environment of the Amazon Basin are considered: (1) deforestation and reforestation, (2) floodplain dynamics, and (3) fluvial geomorphology. Three independent projects are coupled in this experiment to improve the in-place research and to ensure that the Shuttle Imaging Radar-B (SIR-B) experiment stands on a secure base of ongoing work. Major benefits to be obtained center on: (1) areal and locational information, (2) data from various depression angles, and (3) digital radar signatures. Analysis will be conducted for selected sites to define how well SIR-B data can be used for: (1) definition of extent and location of deforestation in a tropical moist forest, (2) definition and quantification of the nature of the vegetation and edaphic conditions on the (floodplain) of the Amazon River, and (3) quantification of the accuracy with which the geometry and channel shifting of the Amazon River may be mapped using SIR-B imagery in conjunction with other remote sensing data.

Bryan, M. L.↗

Oxidation and reduction rates for organic carbon in the Amazon mainstream tributary and floodplain, inferred from distributions of dissolved gases

Concentrations of CO2, O2, CH4, and N2O in the Amazon River system reflect an oxidation-reduction sequence in combination with physical mixing between the floodplain and the mainstem. Concentrations of CO2 ranged from 150 microM in the Amazon mainstem to 200 to 300 microM in aerobic waters of the floodplain, and up to 1000 microM in oxygen-depleted environments. Apparent oxygen utilization (AOU) ranged from 80 to 250 microM. Methane was highly supersaturated, with concentrations ranging from 0.06 microM in the mainstem to 100 microM on the floodplain. Concentrations of N2O were slightly supersaturated in the mainstem, but were undersaturated on the floodplain. Fluxes calculated from these concentrations indicated decomposition of 1600 g C sq m y(-1) of organic carbon in Amazon floodplain waters. Analysis of relationships between CH4, O2, and CO2 concentrations indicated that approximately 50 percent of carbon mineralization on the floodplain is anaerobic, with 20 percent lost to the atmoshphere as CH4. The predominance of anaerobic metabolism leads to consumption of N2O on the flood plane. Elevated concentrations of CH4 in the mainstem probably reflect imput from the floodplain, while high levels of CO2 in the mainstem are derived from a combination of varzea drainage and in situ respiration.

Richey, Jeffrey E.↗

The Amazon Boundary Layer Experiment (ABLE 2A) - Dry season 1985

The Amazon Boundary Layer Experiment (ABLE 2A) used data from aircraft, ground-based, and satellite platforms to characterize the chemistry and dynamics of the lower atmosphere over the Amazon Basin during the early-to-middle dry season, July and August 1985. This paper reports the conceptual framework and experimental approach used in ABLE 2A and serves as an introduction to the detailed papers which follow in this issue. The results of ABLE 2A demonstrate that isoprene, methane, carbon dioxide, nitric oxide, dimethylsulfide, and organic aerosol emissions from soils and vegetation play a major role in determining the chemical composition of the atmospheric mixed layer over undisturbed forest and wetland environments. As the dry season progresses, emissions from both local and distant biomass burning become an important source of carbon monoxide, nitric oxide and ozone in the atmosphere over the central Amazon Basin.

Harriss, R. C.↗

Tropospheric nitric oxide measurements over the Amazon Basin

Horizontal and vertical distributions of nitric oxide (NO) were measured over the Amazon Basin during NASA's Global Tropospheric Experiment (GTE) Amazon Boundary Layer Experiment mission in July-August 1985. During transit flights between the Virginia coast and Manaus, Brazil, NO mixing ratios were 12-15 pptv at 5 km altitude. Values up to 200 pptv were observed in electrically active clouds. During longitudinal surveys over the Amazon region, NO mixing ratios in the lower planetary boundary layer decreased from 25-60 pptv over the central basin to 10-12 pptv in coastal regions. In the convective cloud layer or free troposphere, NO mixing ratios averaged 13 pptv in regions not influenced by biomass burning. No longitudinal trend above the mixed layer could be detected. A steep negative gradient with increasing altitude was noted within the mixed layer before midday. Mixing ratios decreased from 60 pptv at 0.2 km to about 15 pptv at the top of the mixed layer (1 km). By midday, growth of the mixed layer height and enhanced mixing reduced the gradient, and evidence for mixing of NO into the convective cloud layer was noted.

Torres, A. L.↗

Carbon monoxide over the Amazon Basin during the 1985 dry season

During the Amazon Boundary Layer Experiment, approximately 100 hours of in situ carbon monoxide measurements were obtained using a tunable diode laser sensor that provided continuous, fast-response (about 1 s) measurements. This data set, taken on board the NASA Electra between July 12 and August 12, 1985, characterizes the temporal and spatial changes in the CO distribution over the Amazon Basin as meteorological conditions progressed from the early to middle phases of the 1985 day season. Early dry-season CO values of 75-95 ppbv were generally observed in the PBL. As the dry season became well established, biomass burning and a persistent capping inversion at about 3 km profoundly altered the CO distribution, with PBL values typically reaching 150-275 ppbv. Concentrations as high as 800 ppbv were measured within identifiable haze layers. An analysis of satellite imagery shows that biomass burning was occurring along the Amazon River system and in savannah areas located more than 1000 km south of the region sampled.

Sachse, G. W.↗

Boundary layer ozone - An airborne survey above the Amazon Basin

Ozone data obtained over the forest canopy of the Amazon Basin during July and August 1985 in the course of NASA's Amazon Boundary Layer Experiment 2A are discussed, and ozone profiles obtained during flights from Belem to Tabatinga, Brazil, are analyzed to determine any cross-basin effects. The analyses of ozone data indicate that the mixed layer of the Amazon Basin, for the conditions of undisturbed meteorology and in the absence of biomass burning, is a significant sink for tropospheric ozone. As the coast is approached, marine influences are noted at about 300 km inland, and a transition from a forest-controlled mixed layer to a marine-controlled mixed layer is noted.

Gregory, Gerald L.↗

Seasonal dynamics in methane emissions from the Amazon River floodplain to the troposphere

Methane fluxes to the troposphere from the three principal habitats of the floodplain of the Amazon River main stem (open waters, emergent macrophyte beds, and flooded forests) were determined along a 1700-km reach of the river during the low-water period of the annual flood cycle (November-December 1988). Overall, emissions averaged 68 mg CH4/sq m per day and were significantly lower than similar emissions determined previously for the high-water period, 184 mg CH4/sq m per day (July-August 1986). This difference was due to significantly lower emissions from floating macrophyte environments. Low-water emissions from open waters and flooded forest areas were not significantly different than at high water. A monthly time series of methane emission from eight lakes located in the central Amazon basis showed similar results. The data were used to calculate a seasonally weighted annual emission to the troposphere from the Amazon River main stem floodplain of 5.1 Tg/yr, which indicates the importance of the area in global atmospheric chemistry.

Devol, Allan H.↗

Low-level nocturnal wind maximum over the Central Amazon Basin

A low-level nocturnal wind maximum is shown to exist over extensive and nearly undisturbed rainforest near the central Amazon city of Manaus. Meteorological data indicate the presence of this nocturnal wind maximum during both the wet and dry seasons of the Central Amazon Basin. Daytime wind speeds which are characteristically 3-7 m/s between 300 and 1000 m increase to 10-15 m/s shortly after sunset. The wind-speed maximum is reached in the early evening, with wind speeds remaining high until several hours after sunrise. The nocturnal wind maximum is closely linked to a strong low-level inversion formed by radiational cooling of the rainforest canopy. Surface and low-level pressure gradients between the undisturbed forest and the large Amazon river system and the city of Manaus are shown to be responsible for much of the nocturnal wind increase. The pressure gradients are interpreted as a function of the thermal differences between undisturbed forest and the river/city. The importance of both the frictional decoupling and the horizontal pressure gradient suggest that the nocturnal wind maximum does not occur uniformly over all Amazonia. Low-level winds are thought to be pervasive under clear skies and strong surface cooling and that, in many places (i.e., near rivers), local pressure gradients enhance the low-level nocturnal winds.

Greco, Steven↗

A Regional-Scale Assessment of Satellite Derived Precipitable Water Vapor Across The Amazon Basin

Atmospheric water vapor is widely recognized as a key climate variable, linking an assortment of poorly understood and complex processes. It is a major element of the hydrological cycle and provides a mechanism for energy exchange among many of the Earth system components. Reducing uncertainty in our current knowledge of water vapor and its role in the climate system requires accurate measurement, improved modeling techniques, and long-term prediction. Satellites have the potential to satisfy these criteria, as well as provide high resolution measurements that are not available from conventional sources. The focus of this paper is to examine the temporal and mesoscale variations of satellite derived precipitable water vapor (PW) across the Amazon Basin. This region is pivotal in the functioning of the global climate system through its abundant release of latent heat associated with heavy precipitation events. In addition, anthropogenic deforestation and biomass burning activities in recent decades are altering the conditions of the atmosphere, especially in the planetary boundary layer. A physical split-window (PSW) algorithm estimates PW using images from the GOES satellites along with the NCEP/NCAR Reanalysis data that provides the first guess information. Retrievals are made at a three-hourly time step during daylight hours in the Amazon Basin and surrounding areas for the months of June and October in 1988 (dry year) and 1995 (wet year). Spatially continuous fields are generated 5 times daily at 12Z, 15Z, 18Z, 21Z, and 00Z. These fields are then averaged to create monthly and 3 hourly monthly grids. Overall, the PSW estimates PW reasonable well in the Amazon with MAE ranging from 3.0 - 9.0 mm and MAE/observed mean around 20% in comparison to radiosonde observations. The distribution of PW generally mimics that of precipitation. Maximum values (42 - 52 mm) are located in the Northwest whereas minimum values (18 - 27 mm) are found along Brazil's East coast. Aside from the East coast, PW has a stronger north-south gradient than that of rainfall. As for the temporal variation of PW, June (1988 and 1995) experiences a peak about 1400 local time, corresponding to a maximum in air temperature. In contrast, October (1988 and 1995) experiences a maximum early in the day, 1100 local time, with a gradual decrease toward nighttime.

DeLiberty, Tracy↗

Spectrometry of Pasture Condition and Biogeochemistry in the Central Amazon

Regional analyses of Amazon cattle pasture biogeochemistry are difficult due to the complexity of human, edaphic, biotic and climatic factors and persistent cloud cover in satellite observations. We developed a method to estimate key biophysical properties of Amazon pastures using hyperspectral reflectance data and photon transport inverse modeling. Remote estimates of live and senescent biomass were strongly correlated with plant-available forms of soil phosphorus and calcium. These results provide a basis for monitoring pasture condition and biogeochemistry in the Amazon Basin using spaceborne hyperspectral sensors.

Asner, Gregory P.↗

Space-Time Controls on Carbon Sequestration Over Large-Scale Amazon Basin

A major research focus of the LBA Ecology Program is an assessment of the carbon budget and the carbon sequestering capacity of the large scale forest-pasture system that dominates the Amazonia landscape, and its time-space heterogeneity manifest in carbon fluxes across the large scale Amazon basin ecosystem. Quantification of these processes requires a combination of in situ measurements, remotely sensed measurements from space, and a realistically forced hydrometeorological model coupled to a carbon assimilation model, capable of simulating details within the surface energy and water budgets along with the principle modes of photosynthesis and respiration. Here we describe the results of an investigation concerning the space-time controls of carbon sources and sinks distributed over the large scale Amazon basin. The results are derived from a carbon-water-energy budget retrieval system for the large scale Amazon basin, which uses a coupled carbon assimilation-hydrometeorological model as an integrating system, forced by both in situ meteorological measurements and remotely sensed radiation fluxes and precipitation retrieval retrieved from a combination of GOES, SSM/I, TOMS, and TRMM satellite measurements. Brief discussion concerning validation of (a) retrieved surface radiation fluxes and precipitation based on 30-min averaged surface measurements taken at Ji-Parana in Rondonia and Manaus in Amazonas, and (b) modeled carbon fluxes based on tower CO2 flux measurements taken at Reserva Jaru, Manaus and Fazenda Nossa Senhora. The space-time controls on carbon sequestration are partitioned into sets of factors classified by: (1) above canopy meteorology, (2) incoming surface radiation, (3) precipitation interception, and (4) indigenous stomatal processes varied over the different land covers of pristine rainforest, partially, and fully logged rainforests, and pasture lands. These are the principle meteorological, thermodynamical, hydrological, and biophysical control paths which perturb net carbon fluxes and sequestration, produce time-space switching of carbon sources and sinks, undergo modulation through atmospheric boundary layer feedbacks, and respond to any discontinuous intervention on the landscape itself such as produced by human intervention in converting rainforest to pasture or conducting selective/clearcut logging operations.

Smith, Eric A.↗

Imaging Laser Altimetry in the Amazon: Mapping Large Areas of Topography, Vegetation Height and Structure, and Biomass

A flight mission of NASA GSFC's Laser Vegetation Imaging Sensor (LVIS) is planned for June-August 2003 in the Amazon region of Brazil. The goal of this flight mission is to map the vegetation height and structure and ground topography of a large area of the Amazon. This data will be used to produce maps of true ground topography, vegetation height, and estimated above-ground biomass and for comparison with and potential calibration of Synthetic Aperture Radar (SAR) data. Approximately 15,000 sq. km covering various regions of the Amazon will be mapped. The LVIS sensor has the unique ability to accurately sense the ground topography beneath even the densest of forest canopies. This is achieved by using a high signal-to-noise laser altimeter to detect the very weak reflection from the ground that is available only through small gaps in between leaves and between tree canopies. Often the amount of ground signal is 1% or less of the total returned echo. Once the ground elevation is identified, that is used as the reference surface from which we measure the vertical height and structure of the vegetation. Test data over tropical forests have shown excellent correlation between LVIS measurements and biomass, basal area, stem density, ground topography, and canopy height. Examples of laser altimetry data over forests and the relationships to biophysical parameters will be shown. Also, recent advances in the LVIS instrument will be discussed.

Blair, J. Bryan↗

A Simulation Model of Carbon Cycling and Methane Emissions in Amazon Wetlands

An integrative carbon study is investigating the hypothesis that measured fluxes of methane from wetlands in the Amazon region can be predicted accurately using a combination of process modeling of ecosystem carbon cycles and remote sensing of regional floodplain dynamics. A new simulation model has been build using the NASA- CASA concept for predicting methane production and emission fluxes in Amazon river and floodplain ecosystems. Numerous innovations area being made to model Amazon wetland ecosystems, including: (1) prediction of wetland net primary production (NPP) as the source for plant litter decomposition and accumulation of sediment organic matter in two major vegetation classes - flooded forests (varzea or igapo) and floating macrophytes, (2) representation of controls on carbon processing and methane evasion at the diffusive boundary layer, through the lake water column, and in wetland sediments as a function of changes in floodplain water level, (3) inclusion of surface emissions controls on wetland methane fluxes, including variations in daily surface temperature and of hydrostatic pressure linked to water level fluctuations. A model design overview and early simulation results are presented.

Potter, Christopher↗

Simulation of Water Sources and Precipitation Recycling for the MacKenzie, Mississippi and Amazon River Basins

An atmospheric general circulation model simulation for 1948-1997 of the water budgets for the MacKenzie, Mississippi and Amazon River basins is presented. In addition to the water budget, we include passive tracers to identify the geographic sources of water for the basins, and the analysis focuses on the mechanisms contributing to precipitation recycling in each basin. While each basin s precipitation recycling has a strong dependency on evaporation during the mean annual cycle, the interannual variability of the recycling shows important relationships with the atmospheric circulation. The MacKenzie River basin has only a weak interannual dependency on evaporation, where the variations in zonal moisture transport from the Pacific Ocean can affect the basin water cycle. On the other hand, the Mississippi River basin has strong interannual dependencies on evaporation. While the precipitation recycling weakens with increased low level jet intensity, the evaporation variations exert stronger influence in providing water vapor for convective precipitation at the convective cloud base. High precipitation recycling is also found to be partly connected to warm SSTs in the tropical Pacific Ocean. The Amazon River basin evaporation exhibits small interannual variations, so that the interannual variations of precipitation recycling are related to atmospheric moisture transport from the tropical south Atlantic Ocean. Increasing SSTs over the 50-year period are causing increased easterly transport across the basin. As moisture transport increases, the Amazon precipitation recycling decreases (without real time varying vegetation changes). In addition, precipitation recycling from a bulk diagnostic method is compared to the passive tracer method used in the analysis. While the mean values are different, the interannual variations are comparable between each method. The methods also exhibit similar relationships to the terms of the basin scale water budgets.

Bosilovich, Michael G.↗