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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 73 records · Page 4
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Molecule Origins of Dipolar Character in Excited Electronic States

The molecular level origins for symmetry breaking in the excited state of symmetrical quadrupolar molecules, particularly in polar solvents, was investigated using time-dependent density functional theory approaches. Molecules of the form ADA (A/D electron accepting/donating respectively), have been shown to break their symmetry upon excitation, producing an intramolecular charge transfer event and permanent dipole. Current research indicates that polar solvents stabilize the charge transfer event thereby producing asymmetrical solvent dynamics on opposite ends of the molecules. In this work key structural features of the molecule were identified including (1) incorporation of cyano groups, (2) rotation of grafted phenyl rings, and (3) the length of the conjugated R group chain. More specifically, incorporation of cyano groups appears to decrease the magnitude of the dipole in the excited state, thereby indicating that solvent interactions at these groups do not stabilize the charge transfer. While the rotation of the phenyl groups appears to be necessary to break the symmetry of the excited state in the molecule.

36 MATERIALS SCIENCE↗
DOE OSTI2014

Project Shoal Area - ROTC for the CADD/CAP Revision No. 3

The Following Corrections and Clarifications Apply to: CORRECTNE ACTION DECISION DOCUMENT I CORRECTIVE ACTION PLAN FOR CORRECTIVE ACTION UNIT 447: PROJECT SHOAL AREA, SUBSURFACE, NEV ADA, REVISION 3, MARCH 2006.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2023

Evaluating The Impact Of Connected Vehicle Technology On Heavy Duty Vehicle Emissions

Vehicles with advanced driver assistance systems (ADAS) like adaptive cruise control (ACC) could use connected (V2X) data to improve fuel economy  Eco driving generates an energy efficient speed profile by minimizing acceleration events  SwRI demonstrated a 7% reduction in energy consumption for fully loaded class 8 trucks by using nearby vehicle and traffic signal information  How does eco driving impact vehicle emissions and aftertreatment (AT) systems?

Gankov, Stanislav↗
DOE OSTI2023

First report of barley root-knot nematode, Meloidogyne naasi from turfgrass in Idaho, with multigene molecular characterization

Barley root-knot nematode, Meloidogyne naasi Franklin, 1965, is one of the most important pest nematodes infecting monocots (Franklin, 1965). Two-inch core soil samples collected from a golf course in Ada County, Idaho were submitted for identification in November of 2019. A high number of Meloidogyne sp. juveniles were recovered from both soil samples using sieving and decantation followed by the sugar centrifugal flotation method. They were examined by light microscopy, morphometric measurements, and multiple molecular markers, including the ribosomal 28S D2–D3 and intergenic spacer 2 (IGS-2) regions, mitochondrial markers cytochrome oxidase I (COI) and the interval from COII to 16S, and the protein-coding gene Hsp90. Morphometrics as well as BlastN comparisons with other root-knot nematode sequences from GenBank were consistent with identification as M. naasi. Phylogenetic trees inferred from 28S, IGS-2, COI, or Hsp90 alignments each separated the Idaho population into a strongly supported clade with other populations of M. naasi, while the COII-16S interval could not resolve M. naasi from M. minor. This report represents the first morphological and molecular characterization of Meloidogyne naasi from turfgrass in Idaho.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Trip Prediction Using GIS for Vehicle Energy Efficiency

In this paper, we present a novel trip prediction process whose main applications include vehicle energy efficiency optimization. The process is composed of multiple parts. First, a Markov chain model is built from quality-checked, real-world vehicle speed data. Secondly, a geographical information system (GIS), ADAS-RP, is used to define a real-world itinerary on a map-based interface. Finally, an algorithm runs the Markov chains under constraints from the GIS. As a result, any number of second-by-second stochastic speed profiles can be generated for a given itinerary. These speed profiles can then be inputs to vehicle powertrain models such as Autonomie, which can be used to predict energy consumption and other operational parameters. An example of the application of speed prediction is also described, involving route-based energy management for plug-in hybrid electric vehicles, in which the knowledge of future speed profiles can be used to find the optimal energy split.

energy efficiency↗
DOE OSTI2024

Navigating Urban Mobility: Evaluating Infrastructure Strategies for Enhanced Energy-Efficient Access for Micromobility

Cities and communities continue to expand pedestrian and bicycle infrastructure as part of their sustainable mobility and post-pandemic recovery plans. However, the emergence of micro-mobility (e.g., electric bicycles) has created new challenges for urban transport planning. As the popularity of micro-mobility modes has grown, so have safety concerns due to rising injuries, thus challenging many cities to come up with regulatory measures that enable efficient access while minimizing negative impacts from micro-mobility. Leveraging the Open-Source Tool (Mobility Energy Productivity metric), powered by an open-source dataset (OpenStreetMap), and enhanced through the incorporation of perceived discomfort (level-of-traffic stress), this research study focuses on evaluating the accessibility implications of infrastructure planning and regulatory measures for micro-mobility. Five scenarios pertaining to level of traffic stress, sidewalk access, traffic calming, and bike lane coverage were tested in the Denver-Aurora region in Colorado. Maximum improvements in energy-efficient access are realized when allowing sidewalks for micro-mobility use. Cities and planning agencies could leverage this information to assess sidewalk use policies for micro-mobility, while ensuring pedestrian safety and ADA access. Results indicate that expansion of bicycle lane coverage yields 11% accessibility benefits for micro-mobility compared to implementing traffic calming measures yielding 3% accessibility improvements. Further, it was observed most of the population in the Denver-Aurora region is experiencing lower accessibility in-part due to presence of a high-stress connections in the network. Although not generalizable, the use of open-source data and access calculation methodology, make this analysis reproducible and transferable to other locations.

ADVANCED PROPULSION SYSTEMS↗
DOE OSTI2015

Radiological characterization and Decommissioning of Research and Power Reactors - 15602

The production of the detailed activity and dose rate atlases (ADAs) is one of the indispensable measures in the decommissioning process of nuclear reactors which allows to determine the radiation field for optimal radiation protection as well as to quantify and characterize nuclear waste for disposal. High-detailed simulation models capable of performing neutron and radiation transport calculations at different levels of precision and details are applied for this purpose. Within the framework of the research project 'Decommissioning of Research and Power Reactors', funded by the German Federal Ministry of Education and Research (BMBF), and implemented by the Institute of Nuclear Engineering and Technology Transfer (NET) -RWTH Aachen, sophisticated simulation tools are developed. The enhances capability of these tools for the generation of the activity and dose rate distribution are tested and demonstrated on the shutdown German research reactor FRJ-2. To achieve the project goal different computational steps were required: 1. Development of a calculational CAD-based model for Monte Carlo neutron and gamma transport simulation using converter tool McCad 2. Design of the neutron source which reproduce the neutron distribution leaving the core 3. Enhancement of the simulation performance by using the hybrid deterministic Monte Carlo variance reduction methods 4. Calculation of N-flux distribution in the entire geometry 5. Development of couple codes between MCNP5 and the activation code ORIGEN2.2 This paper describes the main significant project milestones. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2026

Summertime methane and carbon dioxide emission rates and associated variables from a national‐scale survey of 146 reservoirs in the United States

Reservoirs are globally important sources of greenhouse gases, but the magnitude of their emissions is highly uncertain. Here, we present data for 146 reservoirs from two surveys of reservoir methane and carbon dioxide emissions, one at the regional scale in the midwestern United States and one at the national scale in the United States, plus data from two hand‐picked sites in Washington and Puerto Rico. At all reservoirs, ebullitive and diffusive emissions and basic physicochemistry were measured at 15–55 locations during one 22 to 64‐h period during the summers of 2016–2023, with four reservoirs revisited a second time. Contemporaneous water chemistry measurements were made at one or two locations in each reservoir. The dataset consists of two geospatial files and seven CSV files containing greenhouse gas emissions, water chemistry, morphology, and other relevant data. To date, these data comprise the largest multi‐reservoir emissions dataset assembled using consistent measurement methods.

Beaulieu, Jake J. [US Environmental Protection Age↗
DOE OSTI2020

Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19

In this work, we present a supercomputer-driven pipeline for in silico drug discovery using enhanced sampling molecular dynamics (MD) and ensemble docking. Ensemble docking makes use of MD results by docking compound databases into representative protein binding-site conformations, thus taking into account the dynamic properties of the binding sites. We also describe preliminary results obtained for 24 systems involving eight proteins of the proteome of SARS-CoV-2. The MD involves temperature replica exchange enhanced sampling, making use of massively parallel supercomputing to quickly sample the configurational space of protein drug targets. Using the Summit supercomputer at the Oak Ridge National Laboratory, more than 1 ms of enhanced sampling MD can be generated per day. We have ensemble docked repurposing databases to 10 configurations of each of the 24 SARS-CoV-2 systems using AutoDock Vina. Comparison to experiment demonstrates remarkably high hit rates for the top scoring tranches of compounds identified by our ensemble approach. We also demonstrate that, using Autodock-GPU on Summit, it is possible to perform exhaustive docking of one billion compounds in under 24 h. Finally, we discuss preliminary results and planned improvements to the pipeline, including the use of quantum mechanical (QM), machine learning, and artificial intelligence (AI) methods to cluster MD trajectories and rescore docking poses.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2018

High-Performance Molecular Dynamics Simulation for Biological and Materials Sciences: Challenges of Performance Portability, Dallas, TX, November 2018.

Highly-optimized parallel molecular dynamics programs have allowed researchers to achieve ground-breaking results in biological and materials sciences. This type of performance has come at the expense of portability: a significant effort is required for performance optimization on each new architecture. Using a metric that emphasizes speedup, we assess key accelerating programming components of four different best-performing molecular dynamics programs - GROMACS, NAMD, LAMMPS and CP2K-- each having a particular scope of application, for contribution to performance and for portability. We use builds with and without these components, tested on HPC systems. We also analyze the code-bases to determine compliance with portability recommendations. We find that for all four programs, the contributions of the non-portable components to speed are essential to the programs' performances; without them we see a reduction in time-to-solution of a magnitude that is insufferable to domain scientists. This characterizes the performance efficiency that must be approached for good performance portability on a programmatic level, suggesting solutions to this difficult problem, which should come from developers, industry and funding institutions, and possibly new research in programming languages.

Computer Science↗
DOE OSTI2015

Abiotic and biotic controls of soil moisture spatiotemporal variability and the occurrence of hysteresis

Abstract An expression that separates biotic and abiotic controls on the temporal dynamics of the soil moisture spatial coefficient of variation C v ( θ ) was explored via numerical simulations using a mechanistic ecohydrological model, Tethys‐Chloris. Continuous soil moisture spatiotemporal dynamics at an exemplary hillslope domain were computed for six case studies characterized by different climate and vegetation cover and for three configurations of soil properties. It was shown that abiotic controls largely exceed their biotic counterparts in wet climates. Biotic controls on C v ( θ ) were found to be more pronounced in Mediterranean climates. The relation between C v ( θ ) and spatial mean soil moisture was found to be unique in wet locations, regardless of the soil properties. For the case of homogeneous soil texture, hysteretic cycles between C v ( θ ) and were observed in all Mediterranean climate locations considered here and to a lesser extent in a deciduous temperate forest. Heterogeneity in soil properties increased C v ( θ ) to values commensurate with field observations and weakened signatures of hysteresis at all of the studied locations. This finding highlights the role of site‐specific heterogeneities in hiding or even eliminating the signature of climatic and biotic controls on C v ( θ ), thereby offering a new perspective on causes of confounding results reported across field experiments.

Fatichi, Simone↗
DOE OSTI2015

The Matchmaker Exchange: A Platform for Rare Disease Gene Discovery

There are few better examples of the need for data sharing than in the rare disease community, where patients, physicians, and researchers must search for "the needle in a haystack" to uncover rare, novel causes of disease within the genome. Impeding the pace of discovery has been the existence of many small siloed datasets within individual research or clinical laboratory databases and/or disease-specific organizations, hoping for serendipitous occasions when two distant investigators happen to learn they have a rare phenotype in common and can "match" these cases to build evidence for causality. However, serendipity has never proven to be a reliable or scalable approach in science. As such, the Matchmaker Exchange (MME) was launched to provide a robust and systematic approach to rare disease gene discovery through the creation of a federated network connecting databases of genotypes and rare phenotypes using a common application programming interface (API). The core building blocks of the MME have been defined and assembled. In conclusion, three MME services have now been connected through the API and are available for community use. Additional databases that support internal matching are anticipated to join the MME network as it continues to grow.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2019

Using Compiler Directives for Performance Portability in Scientific Computing: Kernels from Molecular Simulation

Achieving performance portability for high-performance computing (HPC) applications in scientific fields has become an increasingly important initiative due to large differences in emerging supercomputer architectures. Here we test some key kernels from molecular dynamics (MD) to determine whether the use of the OpenACC directive-based programming model when applied to these kernels can result in performance within an acceptable range for these types of programs in the HPC setting. We find that for easily parallelizable kernels, performance on the GPU remains within this range. On the CPU, OpenACC-parallelized pairwise distance kernels would not meet the performance standards required, when using AMD Opteron “Interlagos” processors, but with IBM Power 9 processors, performance remains within an acceptable range for small batch sizes. These kernels provide a test for achieving performance portability with compiler directives for problems with memory-intensive components as are often found in scientific applications.

Sedova, Ada↗
DOE OSTI2019

Porting Adaptive Ensemble Molecular Dynamics Workflows to the Summit Supercomputer

Molecular dynamics (MD) simulations must take very small (femtosecond) integration steps in simulation-time to avoid numerical errors. Efficient use of parallel programming models and accelerators in state-of-the art MD programs now is pushing Moore’s limit for time-per-MD step. As a result, directly simulating timescales beyond milliseconds will not be attainable directly, even at exascale. However, concepts from statistical physics can be used to combine many parallel simulations to provide information about longer timescales and to adequately sample the simulation space, while preserving details about the dynamics of the system. Implementing such an approach requires a workflow program that allows adaptable steering of task assignments based on extensive statistical analysis of intermediate results. Here we report the implementation of such an adaptable workflow program to drive simulations on the Summit IBM Power System AC922, a pre-exascale supercomputer at the Oak Ridge Leadership Computing Facility (OLCF). We compare to experiences on Titan, Summit’s predecessor, report the performance of the workflow and its components, and describe the porting process. We find that using a workflow program managed by a Mongo database can provide the fault tolerance, scalable performance, task dispatch rate, and reconfigurability required for robust and portable implementation of ensemble simulations such as are used in enhanced-sampling molecular dynamics. This type of workflow generator can also be used to provide adaptive steering of ensemble simulations for other applications in addition to MD.

Ossyra, John R.↗
DOE OSTI2019

Highly interactive, steered scientific workflows on HPC systems: optimizing design solutions

Scientific workflows are becoming increasingly important in high performance computing (HPC) settings, as the feasibility and appeal of many simultaneous heterogeneous tasks increases with increasing hardware capabilities. Currently no HPC-based workflow platform supports a dynamically adaptable workflow with interactive steering and analysis at run-time. Furthermore, for most workflow programs, compute resources are fixed for a given instance, resulting in a possible waste of expensive allocation resources when tasks are spawned and killed. Here we describe the design and testing of a run-time-interactive, adaptable, steered workflow tool capable of executing thousands of parallel tasks without an MPI programming model, using a database management system to facilitate task management through multiple live connections. We find that on the Oak Ridge Leadership Computing Facility pre-exascale Summit supercomputer it is possible to launch and interactively steer workflows with thousands of simultaneous tasks with negligible latency. For the case of particle simulation and analysis tasks that run for minutes to hours, this paradigm offers the prospect of a robust and efficient means to perform simulation-space exploration with on-the-fly analysis and adaptation.

Ossyra, John R↗
DOE OSTI2025

Robustness of Deep Learning Classification to Adversarial Input on GPUs: Asynchronous Parallel Accumulation Is a Source of Vulnerability

The ability of machine learning (ML) classification models to resist small, targeted input perturbations—known as adversarial attacks—is a key measure of their safety and reliability. We show that floating-point non associativity (FPNA) coupled with asynchronous parallel programming on GPUs is sufficient to result in misclassification, without any perturbation to the input. Additionally, we show that this misclassification is particularly significant for inputs close to the decision boundary and that standard adversarial robustness results may be overestimated up to 4.6 when not considering machine-level details. We first study a linear classifier, before focusing on standard Graph Neural Network (GNN) architectures and datasets used in robustness assessments. We develop a novel black-box attack using Bayesian optimization to discover external workloads that can change the instruction scheduling which bias the output of reductions on GPUs and reliably lead to misclassification. Motivated by these results, we present a new learnable permutation (LP) gradient-based approach to learning floating-point operation orderings that lead to misclassifications. The LP approach provides a worst-case estimate in a computationally efficient manner, avoiding the need to run identical experiments tens of thousands of times over a potentially large set of possible GPU states or architectures. Finally, using instrumentation-based testing, we investigate parallel reduction ordering across different GPU architectures under external background workloads, when utilizing multi-GPU virtualization, and when applying power capping. Our results demonstrate that parallel reduction ordering varies significantly across architectures under the first two conditions, substantially increasing the search space required to fully test the effects of this parallel scheduler-based vulnerability. These results and the methods developed here can help to include machine-level considerations into adversarial robustness assessments, which can make a difference in safety and mission critical applications.

Shanmugavelu, Sanjif [Maxeler Technologies, a Groq↗