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At least 703 records · Page 39

SIGMA: A Knowledge-Based Simulation Tool Applied to Ecosystem Modeling

The need for better technology to facilitate building, sharing and reusing models is generally recognized within the ecosystem modeling community. The Scientists' Intelligent Graphical Modelling Assistant (SIGMA) creates an environment for model building, sharing and reuse which provides an alternative to more conventional approaches which too often yield poorly documented, awkwardly structured model code. The SIGMA interface presents the user a list of model quantities which can be selected for computation. Equations to calculate the model quantities may be chosen from an existing library of ecosystem modeling equations, or built using a specialized equation editor. Inputs for dim equations may be supplied by data or by calculation from other equations. Each variable and equation is expressed using ecological terminology and scientific units, and is documented with explanatory descriptions and optional literature citations. Automatic scientific unit conversion is supported and only physically-consistent equations are accepted by the system. The system uses knowledge-based semantic conditions to decide which equations in its library make sense to apply in a given situation, and supplies these to the user for selection. "Me equations and variables are graphically represented as a flow diagram which provides a complete summary of the model. Forest-BGC, a stand-level model that simulates photosynthesis and evapo-transpiration for conifer canopies, was originally implemented in Fortran and subsequenty re-implemented using SIGMA. The SIGMA version reproduces daily results and also provides a knowledge base which greatly facilitates inspection, modification and extension of Forest-BGC.

Dungan, Jennifer L.↗

Optimal adjustment sets for causal query estimation in partially observed biomolecular networks

Abstract Causal query estimation in biomolecular networks commonly selects a ‘valid adjustment set’, i.e. a subset of network variables that eliminates the bias of the estimator. A same query may have multiple valid adjustment sets, each with a different variance. When networks are partially observed, current methods use graph-based criteria to find an adjustment set that minimizes asymptotic variance. Unfortunately, many models that share the same graph topology, and therefore same functional dependencies, may differ in the processes that generate the observational data. In these cases, the topology-based criteria fail to distinguish the variances of the adjustment sets. This deficiency can lead to sub-optimal adjustment sets, and to miss-characterization of the effect of the intervention. We propose an approach for deriving ‘optimal adjustment sets’ that takes into account the nature of the data, bias and finite-sample variance of the estimator, and cost. It empirically learns the data generating processes from historical experimental data, and characterizes the properties of the estimators by simulation. We demonstrate the utility of the proposed approach in four biomolecular Case studies with different topologies and different data generation processes. The implementation and reproducible Case studies are at https://github.com/srtaheri/OptimalAdjustmentSet.

59 BASIC BIOLOGICAL SCIENCES↗

Radio-bright versus radio-dark gamma-ray bursts – more evidence for distinct progenitors

ABSTRACT We analyse two distinct samples of gamma-ray bursts (GRBs), with and without radio afterglow emission. We use an updated sample of 211 GRBs and find, in agreement with previous results (although with a sample that is almost twice as large), that the intrinsic gamma-ray duration (Tint) and isotropic equivalent energy (Eiso) distributions between these two populations appear to be significantly different. This implies that the radio-bright GRBs are more energetic and last longer than radio-dark GRBs. The two samples’ redshift distributions (z) are not statistically different. We analyse several correlations between variables (Eiso, Tint, jet opening angle, and z), accounting for selection effects and redshift evolution using the Efron–Petrosian method. We find a statistically significant anticorrelation between the jet opening angle and redshift, as well as between Tint and redshift, for both radio-bright and radio-dark GRBs. Finally, in agreement with previous work, we find that very high energy (0.1–100 GeV) extended emission is present only in the radio-bright GRB sample. Our work supports the possibility that the radio-bright and radio-dark GRBs originate from different progenitors.

79 ASTRONOMY AND ASTROPHYSICS↗

Amylases in the Human Vagina

ABSTRACT Dominance of Lactobacillus species in vaginal communities is a hallmark of healthy conditions in the female genital tract. Key nutrients for lactobacilli include sugars produced when glycogen is degraded by α-amylase in the vagina. While α-amylase activity has been demonstrated in vaginal fluids, it is unclear whether α-amylases are produced solely by the host, bacteria in the vagina, or both. We screened cervicovaginal mucus from 23 reproductive-age women, characterized the species composition of vaginal communities, measured vaginal pH, and determined levels of amylase activity, glycogen, and lactic acid. Based on differences in these measured variables, one sample from each of four individual donors was selected for metagenomic and proteomic analyses. Of eight putative bacterial amylases identified in the assembled bacterial metagenomes, we detected four in vaginal fluids. These amylases were produced by various bacteria in different vaginal communities. Moreover, no two communities were the same in terms of which bacteria were producing amylases. Although we detected bacterial amylases in vaginal fluids, there was no clear association between the bacterial species that was dominant in a community and the level of amylase activity. This association was likely masked by the presence of human α-amylase, which was also detected in vaginal fluids. Finally, the levels of amylase activity and glycogen were only weakly associated. Our findings show, for the first time, that multiple amylases from both bacterial and human origins can be present simultaneously in the vagina. This work also suggests that the link between glycogen, amylase, and Lactobacillus in the vagina is complex. IMPORTANCE In this study, we show that multiple bacteria in the vaginal community produce amylases that hydrolyze glycogen into simpler sugars (i.e., maltose and maltotriose). These sugars serve as “common goods” that sustain bacterial populations in vaginal communities. Given the temporal changes that are observed in the human vaginal microbiome, we expect the kinds of bacterial amylases produced will also vary over time. These differences influence the pool of resources that are broadly shared and shape the species composition of the vaginal bacterial community.

59 BASIC BIOLOGICAL SCIENCES↗

Central Atlantic regional ecological test site: A prototype regional environmental information system

The author has identified the following significant results. A comparison of photomorphic regions from an uncontrolled ERTS-1 mosaic of CARETS to land use areas on a map published in the National Atlas revealed close correlations in non-urban regions. Such regional scale analysis of ERTS-1 data has the potential for providing an economical sampling strategy for selecting sites for more detailed field measurements if other environmental variables can be correlated with patterns on ERTS-1 imagery. ERTS-1 imagery has also revealed for the first time the appearance of CARETS during the winter months. Investigators have identified extensive areas of conifers, which have previously been indistinguishable from deciduous vegetation. Imagery has also shown very clearly the extent of snow cover at a particular time over the region. The evaluation of ERTS-1 imagery used for the land use mapping of the shore zone of CARETS, has shown that the presence or absence of elements of an hierarchal system of shoreline landforms can help identify areas of potential rapid change. Changes in land use class distributions on the Barrier Islands signify the environmental response to natural and man-caused processes. Both environmental vulnerability and sensitivity can be estimated from the repetitive ERTS-1 coverage of long reaches of the CARETS coast. Results indicate potential applications to land use planning, management, and regional environmental quality analysis.

Alexander, R. H.↗

Dynamic response of Mach 2.5 axisymmetric inlet with 40 percent supersonic internal area contraction

Results of experimental tests conducted on a supersonic, mixed compression, axisymmetric inlet are presented. The inlet is designed for operation at Mach 2.5 with a turbofan engine (TF-30). The inlet was terminated with either a choked-orifice plate or a long pipe with variable area choked exit plug. Frequency responses were obtained for selected static pressures in the diffuser. These pressures were selected as potential control signals for terminal shock control. Frequency responses were obtained for the Mach 2 and 2.5 conditions for different terminations. Responses also were obtained with and without cowl bleed. Internal disturbances were produced by sinusoidally varying the inlet overboard bypass doors at frequencies out to 100 hertz.

Baumbick, R. J.↗

Single stage, low noise, advanced technology fan. Volume 1: Aerodynamic design

The aerodynamic design for a half-scale fan vehicle, which would have application on an advanced transport aircraft, is described. The single stage advanced technology fan was designed to a pressure ratio of 1.8 at a tip speed of 503 m/sec 11,650 ft/sec). The fan and booster components are designed in a scale model flow size convenient for testing with existing facility and vehicle hardware. The design corrected flow per unit annulus area at the fan face is 215 kg/sec sq m (44.0 lb m/sec sq ft) with a hub-tip ratio of 0.38 at the leading edge of the fan rotor. This results in an inlet corrected airflow of 117.9 kg/sec (259.9 lb m/sec) for the selected rotor tip diameter if 90.37 cm (35.58 in.). The variable geometry inlet is designed utilizing a combination of high throat Mach number and acoustic treatment in the inlet diffuser for noise suppression (hybrid inlet). A variable fan exhaust nozzle was assumed in conjunction with the variable inlet throat area to limit the required area change of the inlet throat at approach and hence limit the overall diffusion and inlet length. The fan exit duct design was primarily influenced by acoustic requirements, including length of suppressor wall treatment; length, thickness and position on a duct splitter for additional suppressor treatment; and duct surface Mach numbers.

Sullivan, T. J.↗

Conceptual design study of an Improved Gas Turbine (IGT) powertrain

Design concepts for an improved automotive gas turbine powertrain are discussed. Twenty percent fuel economy improvement (over 1976), competitive costs (initial and life cycle), high reliability/life, low emissions, and noise/safety compliance were among the factors considered. The powertrain selected consists of a two shaft gas turbine engine with variable geometry aerodynamic components and a single disk rotating regenerator. The regenerator disk, gasifier turbine rotor, and several hot section flowpath parts are ceramic. The powertrain utilizes a conventional automatic transmission. The closest competitor was a single shaft turbine engine matched to a continuously variable transmission (CVT). Both candidate powertrain systems were found to be similar in many respects; however, the CVT represented a significant increase in development cost, technical risk, and production start-up costs over the conventional automatic transmission. Installation of the gas turbine powertrain was investigated for a transverse mounted, front wheel drive vehicle.

Johnson, R. A.↗

Cloud cover estimation: Use of GOES imagery in development of cloud cover data base for insolation assessment

The potential of using digital satellite data to establish a cloud cover data base for the United States, one that would provide detailed information on the temporal and spatial variability of cloud development are studied. Key elements include: (1) interfacing GOES data from the University of Wisconsin Meteorological Data Facility with the Jet Propulsion Laboratory's VICAR image processing system and IBIS geographic information system; (2) creation of a registered multitemporal GOES data base; (3) development of a simple normalization model to compensate for sun angle; (4) creation of a variable size georeference grid that provides detailed cloud information in selected areas and summarized information in other areas; and (5) development of a cloud/shadow model which details the percentage of each grid cell that is cloud and shadow covered, and the percentage of cloud or shadow opacity. In addition, comparison of model calculations of insolation with measured values at selected test sites was accomplished, as well as development of preliminary requirements for a large scale data base of cloud cover statistics.

Huning, J. R.↗

Processing techniques for software based SAR processors

Software SAR processing techniques defined to treat Shuttle Imaging Radar-B (SIR-B) data are reviewed. The algorithms are devised for the data processing procedure selection, SAR correlation function implementation, multiple array processors utilization, cornerturning, variable reference length azimuth processing, and range migration handling. The Interim Digital Processor (IDP) originally implemented for handling Seasat SAR data has been adapted for the SIR-B, and offers a resolution of 100 km using a processing procedure based on the Fast Fourier Transformation fast correlation approach. Peculiarities of the Seasat SAR data processing requirements are reviewed, along with modifications introduced for the SIR-B. An Advanced Digital SAR Processor (ADSP) is under development for use with the SIR-B in the 1986 time frame as an upgrade for the IDP, which will be in service in 1984-5.

Leung, K.↗

NASA mechanical impact testing in high-pressure oxygen

Three independently developed high-pressure gaseous oxygen mechanical impact testers have been used to evaluate materials for the Space Shuttle Program. A test program evaluating the performance of these test systems is described. The gaseous and liquid oxygen test procedures and equipment are considered along with the material selection procedures. The results of the NASA mechanical impact tester variability study are presented, including penetration function curves and curve parameters and equivalent energies and comparisons of high-pressure testers at ambient pressure and temperature, ambient temperature and 34 MPa, and cryogenic temperature and 34 MPa. Finally, a summary of NASA mechanical impact test data is presented.

Bryan, C. J.↗

Ceramic components for the AGT 100 engine

Historically, automotive gas turbines have not been able to meet requirements of the marketplace with respect to cost, performance, and reliability. However, the development of appropriate ceramic materials has overcome problems related to a need for expensive superalloy components and to limitations regarding the operating temperature. An automotive gas turbine utilizing ceramic components has been developed by a U.S. automobile manufacturer. A 100-horsepower, two-shaft, regenerative engine geometry was selected because it is compatible with manual, automatic, and continuously variable transmissions. Attention is given to the ceramic components, the ceramic gasifier turbine rotor development, the ceramic gasifier scroll, ceramic component testing, and the use of advanced nondestructive techniques for the evaluation of the engine components.

Helms, H. E.↗

Cryogenic Propellant Scavenging

A detailed description of a computer model that has been developed for assessing the feasibility of low g cryogen propellant scavenging from the space shuttle External Tank (ET) is given. Either pump-assisted or pressure-induced propellant transfer may be selected. The program will accept a wide range of input variables, including the fuel to be transferred (LOX or LH2), heat leaks, tank temperatures, and piping and equipment specifications. The model has been parametrically analyzed to determine initial design specification for the system.

Louie, B.↗

Landsat Thematic Mapper digital information content for agricultural environments

Landsat Thematic Mapper (TM) data collected for Imperial Valley, California in December, 1982 were digitally examined to assess their utility to distinguish among agricultural and other land-covers. Statistics for thirty-seven training sites representing a variety of crops plus urban, water and desert land-covers were obtained and analyzed using transformed divergence (TD) calculations. TD values were employed to assess intraclass variability and the best bands for classification. Four subscenes were selected for clustering or unsupervised signature extraction. These areas were agriculture, urban, desert and water land-covers. The number of clusters for these subscenes were examined and the best TM bands for interclass separability were identified. The results of the clustering and training site analyses for interclass separability were compared. The TM data were useful for the digital delimitation of most crops and other cover types in this analysis. Four bands of data are adequate for classification with the best results obtained by the selection of one band from each of the available portions of the electromagnetic spectrum. Different band combinations are best for various land-cover intraclass separability.

Haack, Barry↗

Nonlinear aerodynamic modeling using multivariate orthogonal functions

A technique was developed for global modeling of nonlinear aerodynamic coefficients using multivariate orthogonal functions based on the data. Each orthogonal function retained in the model was decomposed into an expansion of ordinary polynomials in the independent variables, so that the final model could be interpreted as selectively retained terms from a multivariable power series expansion. A predicted squared-error metric was used to determine the orthogonal functions to be retained in the model; analytical derivatives were easily computed. The approach was demonstrated on the Z-body axis aerodynamic force coefficient (Cz) wind tunnel data for an F-18 research vehicle which came from a tabular wind tunnel and covered the entire subsonic flight envelope. For a realistic case, the analytical model predicted experimental values of Cz very well. The modeling technique is shown to be capable of generating a compact, global analytical representation of nonlinear aerodynamics. The polynomial model has good predictive capability, global validity, and analytical differentiability.

Morelli, Eugene A.↗

Reliability, Risk and Cost Trade-Offs for Composite Designs

Risk and cost trade-offs have been simulated using a probabilistic method. The probabilistic method accounts for all naturally-occurring uncertainties including those in constituent material properties, fabrication variables, structure geometry and loading conditions. The probability density function of first buckling load for a set of uncertain variables is computed. The probabilistic sensitivity factors of uncertain variables to the first buckling load is calculated. The reliability-based cost for a composite fuselage panel is defined and minimized with respect to requisite design parameters. The optimization is achieved by solving a system of nonlinear algebraic equations whose coefficients are functions of probabilistic sensitivity factors. With optimum design parameters such as the mean and coefficient of variation (representing range of scatter) of uncertain variables, the most efficient and economical manufacturing procedure can be selected. In this paper, optimum values of the requisite design parameters for a predetermined cost due to failure occurrence are computationally determined. The results for the fuselage panel analysis show that the higher the cost due to failure occurrence, the smaller the optimum coefficient of variation of fiber modulus (design parameter) in longitudinal direction.

Shiao, Michael C.↗

Augmentation of the IUE Ultraviolet Spectral Atlas

The IUE Ultraviolet Spectral Atlas and the first addendum were published by Wu et al. in printed and machine readable versions. This atlas and addendum contain UV spectra of 315 stars with spectral types ranging from O3 to M5 and many spectral type-luminosity class combinations. There were three criteria for selecting these stars: (1) they were not spectroscopic binaries or variables with significant changes in magnitude or color, (2) they must have well-determined spectral types (many are MK standards), and (3) the stars should not be heavily reddened. Further augmentation of the atlas is desirable to provide a more complete coverage of the spectral type-luminosity class combinations and more than one star per combination. The extra spectral type-luminosity class combinations reduce the need for interpolation. The extra stars within a given combination guard against variability and peculiarity, and allow for a finite range of temperature, metallicity and gravity. The previous atlas and addendum presented data that were obtained through the eleventh episode under IUE programs with C.-C. Wu and D. Burstein as principal investigators. In this second addendum, we present the spectra obtained by Wu's programs during the twelfth through seventeenth episodes: SALCW, SAMCW, SANCW, SAOCW, SAPCW and SAQCW. During the period between July 1989 and September 1994, Wu observed 183 stars under these programs. Most of these observations are high quality trails or pseudo-trails (multiple exposures in the large aperture).

Wu, Chi-Chao↗