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At least 703 records · Page 39

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DOE OSTI2016

SacB-SacR Gene Cassette As the Negative Selection Marker to Suppress Agrobacterium Overgrowth in Agrobacterium -Mediated Plant Transformation

Agrobacterium overgrowth is a common problem in Agrobacterium -mediated plant transformation. To suppress the Agrobacterium overgrowth, various antibiotics have been used during plant tissue culture steps. The antibiotics are expensive and may adversely affect plant cell differentiation and reduce plant transformation efficiency. The SacB-SacR proteins are toxic to most Agrobacterium tumefaciens strains when they are grown on culture medium supplemented with sucrose. Therefore, SacB-SacR genes can be used as negative selection markers to suppress the overgrowth of A. tumefaciens in the plant tissue culture process. We generated a mutant A. tumefaciens strain GV2260 ( recA-SacB/R ) that has the SacB-SacR cassette inserted into the bacterial genome at the recA gene locus. The mutant Agrobacterium strain is sensitive to sucrose but maintains its ability to transform plant cells in both transient and stable transformation assays. We demonstrated that the mutant strain GV2260 ( recA-SacB/R ) can be inhibited by sucrose that reduces the overgrowth of Agrobacterium and therefore improves the plant transformation efficiency. We employed GV2260 ( recA-SacB/R ) to generate stable transgenic N. benthamiana plants expressing a CRISPR-Cas9 for knocking out a WRKY transcription factor.

Biochemistry & Molecular Biology↗

DOE OSTI2022

Pitch-Angle Diffusion in the Earth’s Magnetosphere Organized by the Mozer-Transformed Coordinate System

In the Earth’s dipole magnetosphere finite-gyroradius effects produce a shift of the atmospheric loss cone away from the direction of the magnetic field. This loss-cone shift is theoretically described by the “Mozer transform”, which is based upon the curvature drift of particles crossing the equatorial plane. For positive ions the northern and southern loss cones both shift westward and for electrons the northern and southern loss cones both shift eastward. This loss-cone shift is part of a coordinate-system transform, with the transformed coordinates better organizing the behavior of particle orbits in the dipole magnetic field (e.g. first adiabatic invariants, mirror heights, and bounce times). In this report it is demonstrated that the transformed coordinate system also properly organizes pitch-angle diffusion. This improved organization of the diffusion is true whether the angular scattering is produced by plasma-wave scattering or by field-line-curvature (FLC) scattering. It is shown that FLC scattering and the loss cone shift are linked, so that if FLC scattering is occurring, there is a loss cone shifted away from the magnetic-field direction and the Mozer-transformed coordinates are needed.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2019

Solute Transport and Transformation in an Intermittent, Headwater Mountain Stream with Diurnal Discharge Fluctuations

Time-variable discharge is known to control both transport and transformation of solutes in the river corridor. Still, few studies consider the interactions of transport and transformation together. Here, we consider how diurnal discharge fluctuations in an intermittent, headwater stream control reach-scale solute transport and transformation as measured with conservative and reactive tracers during a period of no precipitation. One common conceptual model is that extended contact times with hyporheic zones during low discharge conditions allows for increased transformation of reactive solutes. Instead, we found tracer timescales within the reach were related to discharge, described by a single discharge-variable StorAge Selection function. We found that Resazurin to Resorufin (Raz-to-Rru) transformation is static in time, and apparent differences in reactive tracer were due to interactions with different ages of storage, not with time-variable reactivity. Overall we found reactivity was highest in youngest storage locations, with minimal Raz-to-Rru conversion in waters older than about 20 h of storage in our study reach. Therefore, not all storage in the study reach has the same potential biogeochemical function and increasing residence time of solute storage does not necessarily increase reaction potential of that solute, contrary to prevailing expectations.

54 ENVIRONMENTAL SCIENCES↗

NASA NTRS1971

Multi-dimensional real Fourier transform

Four subroutines compute one-dimensional and multi-dimensional Fourier transforms for real data, multi-dimensional complex Fourier transforms, and multi-dimensional sine, cosine and sine-cosine transforms. Subroutines use Cooley-Tukey fast Fourier transform. In all but one-dimensional case, transforms are calculated in up to six dimensions.

Krogh, F. T.↗

NASA NTRS1972

Relations between Haar and Walsh/Hadamard transforms.

Relations between the Haar and Walsh/Hadamard (W/H) transforms, which are proved, show that for some applications the Haar transform performs as well as, and faster than, the W/H transform. These relations yield a family of orthogonal transforms including the Haar and W/H transforms with a common fast algorithm.

Fino, B. J.↗

NASA NTRS1973

Pseudocolor transformation of ERTS imagery

One of the photographic techniques which shows great promise as an aid in interpreting ERTS imagery is pseudocolor transformation. It is a process where each shade of gray in an original black-and-white image is seen as a different color in the transformation. The well known ERTS-1 MSS image of the Monterey Bay-San Francisco area was transformed using a technique which requires only two intermediate separations. Possible faults were delineated on an overlay of the transformation before referring to geologic maps. The results were quite remarkable in that all large active or recently active faults shown on the latest geologic map of California were interpreted from the image for all, or much, of their length. Perhaps the most interesting result was the Reliz fault. The fault is shown as covered; however, a lineation corresponding to the position of the fault is visible on the image. The usefulness of ERTS image in identifying recently active faults is demonstrable. Although the faults are also visible in the unenhanced image, they are clearly accentuated and more easily mapped on the pseudocolor transformation.

Lamar, J. V.↗

NASA NTRS1973

Magnetic materials selection for static inverter and converter transformers

A program to study magnetic materials is described for use in spacecraft transformers used in static inverters, converters, and transformer-rectifier supplies. Different magnetic alloys best suited for high-frequency and high-efficiency applications were comparatively investigated together with an investigation of each alloy's inherent characteristics. The materials evaluated were the magnetic alloys: (1) 50% Ni, 50% Fe; (2) 79% Ni, 17% Fe, 4% Mo; (3) 48% Ni, 52% Fe; (4) 78% Ni, 17% Fe, 5% Mo; and (5) 3% Si, 97% Fe. Investigations led to the design of a transformer with a very low residual flux. Tests were performed to determine the dc and ac magnetic properties at 2400 Hz using square-wave excitation. These tests were performed on uncut cores, which were then cut for comparison of the gapped and ungapped magnetic properties. When the data of many transformers in many configurations were compiled the optimum transformer was found to be that with the lowest residual flux and a small amount of air gap in the magnetic material. The data obtained from these tests are described, and the potential uses for the materials are discussed.

Mclyman, W. T.↗

NASA NTRS1974

A note on parallel and pipeline computation of fast unitary transforms

The parallel and pipeline organization of fast unitary transform algorithms such as the Fast Fourier Transform are discussed. The efficiency is pointed out of a combined parallel-pipeline processor of a transform such as the Haar transform in which 2 to the n minus 1 power hardware butterflies generate a transform of order 2 to the n power every computation cycle.

Fino, B. J.↗

NASA NTRS1975

On the use of a coordinate transformation for the solution of the Navier-Stokes equations

The equations of fluid motion have been formulated in a generalized noncartesian, nonorthogonal coordinate system. A particular coordinate transformation, which transforms a domain with an irregular lower boundary into a cube, has been constructed. The transformed system, unlike the original one, has flat boundaries and homogeneous boundary conditions. Where the topography is flat, the original and transformed system are identical, and extra terms do not appear. A finite difference scheme for solving the transformed equations has been constructed and will be described later.

Gal-Chen, T.↗

NASA NTRS1975

Parallel and pipeline computation of fast unitary transforms

The letter discusses the parallel and pipeline organization of fast-unitary-transform algorithms such as the fast Fourier transform, and points out the efficiency of a combined parallel-pipeline processor of a transform such as the Haar transform, in which (2 to the n-th power) -1 hardware 'butterflies' generate a transform of order 2 to the n-th power every computation cycle.

Fino, B. J.↗

NASA NTRS1976

The fast decoding of Reed-Solomon codes using number theoretic transforms

It is shown that Reed-Solomon (RS) codes can be encoded and decoded by using a fast Fourier transform (FFT) algorithm over finite fields. The arithmetic utilized to perform these transforms requires only integer additions, circular shifts and a minimum number of integer multiplications. The computing time of this transform encoder-decoder for RS codes is less than the time of the standard method for RS codes. More generally, the field GF(q) is also considered, where q is a prime of the form K x 2 to the nth power + 1 and K and n are integers. GF(q) can be used to decode very long RS codes by an efficient FFT algorithm with an improvement in the number of symbols. It is shown that a radix-8 FFT algorithm over GF(q squared) can be utilized to encode and decode very long RS codes with a large number of symbols. For eight symbols in GF(q squared), this transform over GF(q squared) can be made simpler than any other known number theoretic transform with a similar capability. Of special interest is the decoding of a 16-tuple RS code with four errors.

Reed, I. S.↗

NASA NTRS1977

Transformation theory and translation factors in inelastic atomic collisions

It is shown through the use of transformation theory that unique semiclassical atomic scattering states which obey the asymptotic conditions of formal scattering theory can be derived by transforming 'nontraveling' atomic states, ie., states whose coordinate variables are referred to a stationary origin, to frames at rest with respect to the incoming or outgoing particles. An overview of the problem of properly defining such scattering states is presented. The operator which carries out the necessary transformation from inertial to noninertial frames is derived and its properties are discussed. The relation of this transformation operator to the 'translation factor' discussed in the literature is presented. The application of this operator to transform the time-dependent Schroedinger equation from an inertial to a noninertial frame is presented and shown to introduce new terms in the resulting equation. The implications of these new terms to scattering problems are discussed.

Schmid, G. B.↗

NASA NTRS1978

Performance evaluation for transform coding using a nonseparable covariance model

Intraframe transform coding of pictures for the case of a nonseparable covariance model is considered. Performances of the Walsh-Hadamard, discrete-cosine, and Karhunen-Loeve transforms are compared based on the compaction of signal energy in the transform components and the degree of decorrelation of the data. The results demonstrate that the performances of the discrete-cosine and Karhunen-Loeve transforms compare closely, as is the case with a separable covariance model. The corresponding performance of the Walsh-Hadamard transform is inferior.

Natarajan, T. R.↗

NASA NTRS1978

A fast D.F.T. algorithm using complex integer transforms

Winograd (1976) has developed a new class of algorithms which depend heavily on the computation of a cyclic convolution for computing the conventional DFT (discrete Fourier transform); this new algorithm, for a few hundred transform points, requires substantially fewer multiplications than the conventional FFT algorithm. Reed and Truong have defined a special class of finite Fourier-like transforms over GF(q squared), where q = 2 to the p power minus 1 is a Mersenne prime for p = 2, 3, 5, 7, 13, 17, 19, 31, 61. In the present paper it is shown that Winograd's algorithm can be combined with the aforementioned Fourier-like transform to yield a new algorithm for computing the DFT. A fast method for accurately computing the DFT of a sequence of complex numbers of very long transform-lengths is thus obtained.

Reed, I. S.↗

NASA NTRS1979

Computing the Fast Fourier Transform on a vector computer

Two algorithms are presented for performing a Fast Fourier Transform on a vector computer and are compared on the Control Data Corporation STAR-100. The relative merits of the two algorithms are shown to depend upon whether only a few or many independent transforms are desired. A theorem is proved which shows that a set of independent transforms can be computed by performing a partial transformation on a single vector. The results of this theorem also apply to nonvector machines and have reduced the average time per transform by a factor of two on the CDC 6600 computer.

Korn, D. G.↗

NASA NTRS1979

Comparison between thermochemical and phase stability data for the quartz-coesite-stishovite transformations

Phase stability and elasticity data have been used to calculate the Gibbs free energy, enthalpy, and entropy changes at 298 K and 1 bar associated with the quartz-coesite and coesite-stishovite transformations in the system SiO2. For the quartz-coesite transformation, these changes disagree by a factor of two or three with those obtained by calorimetric techniques. The phase boundary for this transformation appears to be well determined by experiment; the discrepancy, therefore, suggests that the calorimetric data for coesite are in error. Although the calorimetric and phase stability data for the coesite-stishovite transformation yield the same transition pressure at 298 K, the phase-boundary slopes disagree by a factor of two. At present, it is not possible to determine which of the data are in error. Thus serious inconsistencies exist in the thermodynamic data for the polymorphic transformations of silica.

Weaver, J. S.↗

NASA NTRS1982

Transformation of the diamond /110/ surface

The diamond surface undergoes a transformation in its electronic structure by a vacuum anneal at approximately 900 C. This transformation is characterized by the appearance of a feature in the band gap region of the energy loss spectrum. The kinetics of the transformation on the (110) surface is studied by observing the growth of this feature with time and temperature. The transformation is found to be consistent with first-order kinetics with an activation energy of 4.8 eV. It is also found that the band gap feature could be removed by exposure of the transformed surface to excited hydrogen. The results are consistent with the polished diamond (110) surface being covered with hydrogen which removes the band gap states and can be thermally desorbed at approximately 900 C.

Pepper, S. V.↗

NASA NTRS1982

Theory of design using nonlinear transformations

This paper is presenting an overview of the theory of transformations from nonlinear systems to linear systems. Topics covered include (1) necessary and sufficient conditions for transformations to exist, (2) a method of constructing transformations (3) robustness in design (based on transformations theory) and Liapunov functions, (4) estimation theory, and (5) the relationship between transformation theory and 'nonlinear zeros'. Application of these results to automatic flight control is presented in another paper at this session.

Su, R.↗