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At least 703 records · Page 39

In-flight identification of the Galileo spacecraft flexible mode characteristics

The scan platform of the Galialan spacecraft is attached to a flexible stator structure that separates the actuator from the platform-mounted inartial sensor. A scheme to identify the flexible mode characteristics (frequency, damping, and modal coefficient) of the stator using flight data is presentevd. A frequency domain analysis approach is taken and the identified mode characteristics will be used for updating the scan platform controler parameters. The influence of structural flexibility to th s can controller design is explained and the constraints in experting the identification procedure in flight are discused. Computer simulation results of the identification scheme are presented. The scheme in further verified by DISCOS simulations, in conjunction witha full spacecraft dynamics model and the scan platform controllers.

Wang, F. C.↗

A Look Inside the Black Box: Using graph-theoretical descriptors to interpret a Continuous-Filter Convolutional Neural Network (CF-CNN) trained on the global and local minimum energy structures of neutral water clusters

A Continuous Filter Convolutional Neural Network (CF-CNN) was trained to predict the potential energy of water cluster networks \ce{(H2O)_{\textit{N}}}, \textit{N}=10--30, corresponding to local minima lying within 5 kcal/mol from the putative minima taken from a newly published database containing over 5 million unique networks. The chemical sampling space of the database was characterized using chemical descriptors derived from graph theory, which led to the identification of important trends in the topology, connectivity, polygon structures associated with the various networks as a function of cluster size. The resulting graphs are available alongside the original database at \url{https://sites.uw.edu/wdbase/}. The CF-CNN trained on a subset of 500,000 networks for (\textit{N}=10, 30) yielded a mean absolute error of 0.002$\pm$0.002 kcal/mol per water molecule, giving the trained CF-CNN the highest accuracy of any neural network-based surrogate model to date. In addition, clusters of sizes not included in the training set exhibited errors of the same magnitude, indicating that the CF-CNN ptotocol is general enough to accurately predict energies of networks for both smaller and larger sizes than those used during training. The graph-theoretical descriptors were developed in order to analyze the properties of the full database and interpret the predictive power of the CF-CNN. Using topology measures, such as the Wiener index and the average shortest path length along with two similarity measures, we showed that all networks from the test set were within the range of the ones from the training set, suggesting that the training set covered the chemical space of interest quite well. Our graph analysis suggests that the mean degree and number of polygons for networks with larger errors tend to lie further from the mean than those with lower errors. The generality of the used CF-CNN was thus demonstrated, while the use of the graph-theoretical descriptors assisted in interpreting the predicted results.

Bilbrey, Jenna A.↗

Structural characterization and computational analysis of PDZ domains in Monosiga brevicollis

Abstract Identification of the molecular networks that facilitated the evolution of multicellular animals from their unicellular ancestors is a fundamental problem in evolutionary cellular biology. Choanoflagellates are recognized as the closest extant nonmetazoan ancestors to animals. These unicellular eukaryotes can adopt a multicellular‐like “rosette” state. Therefore, they are compelling models for the study of early multicellularity. Comparative studies revealed that a number of putative human orthologs are present in choanoflagellate genomes, suggesting that a subset of these genes were necessary for the emergence of multicellularity. However, previous work is largely based on sequence alignments alone, which does not confirm structural nor functional similarity. Here, we focus on the PDZ domain, a peptide‐binding domain which plays critical roles in myriad cellular signaling networks and which underwent a gene family expansion in metazoan lineages. Using a customized sequence similarity search algorithm, we identified 178 PDZ domains in the Monosiga brevicollis proteome. This includes 11 previously unidentified sequences, which we analyzed using Rosetta and homology modeling. To assess conservation of protein structure, we solved high‐resolution crystal structures of representative M. brevicollis PDZ domains that are homologous to human Dlg1 PDZ2, Dlg1 PDZ3, GIPC, and SHANK1 PDZ domains. To assess functional conservation, we calculated binding affinities for mbGIPC, mbSHANK1, mbSNX27, and mbDLG‐3 PDZ domains from M. brevicollis . Overall, we find that peptide selectivity is generally conserved between these two disparate organisms, with one possible exception, mbDLG‐3. Overall, our results provide novel insight into signaling pathways in a choanoflagellate model of primitive multicellularity.

Gao, Melody↗

Improving Grid Awareness by Empowering Utilities with Machine Learning and Artificial Intelligence

Gap filling time series data typically depends on linear interpolation. More recently gap filling advancements include machine learning techniques. However, none leverage advanced learning approach that uses cohort training or a neighborhood informed approach, which is described in this report. The report also describes a physics informed approach using Reduced Order Models (ROM). There are several methods to capture the nature of the detailed system in aggregated models, however there is a trade-off for these methods developed for multiple applications. These methods have specific requirements and applications that includes consideration of dynamics or covering a larger range of operating conditions, etc. The various methods of aggregation are: 1) Thevenin equivalents for downstream networks 2) Equivalent feeder representation to capture downstream network losses accurately 3) Structured reduced order models for dynamics 4) System identification-based ROM (abstract dynamical model) Methods described in items 1 and 2 above are ideal for steady-state models and useful for this application. Of these two methods, based on the data availability, the targeted application, the reduced order model that is proposed to be developed is the equivalent feeder model representation. This includes a structure of the reduced order model whose parameters can be determined by the system load and losses with the meter measurements.

14 SOLAR ENERGY↗

Controllable topological insulator phases in litharge-phase InBi monolayer

Despite recent advances of layered square-net topological material models that possess ideal semimetallic electronic structures and promising potential in material applications, the identification of experimentally accessible two-dimensional square-net materials with related topological properties has proven challenging. Due to the highly tunable physical and topological properties of III-V semiconductors, we revisit the class of III-V materials and observe that the litharge-phase InBi is a layered square-net material and can be exfoliated into the InBi monolayer. We present a comprehensive first-principles study of the energy landscape of the InBi monolayer. We identify a paraelastic phase and three ferroelastic phases and study their topological properties. Specifically, we show that the paraelastic InBi monolayer is a trivial insulator due to the orbital-ordering-induced band inversion occurring between states with the same parity. Substituting one Bi atom per cell with another V-group element (N, P, As) or applying an electric field that breaks the inversion symmetry and changes the orbital onsite energy, the paraelastic InBi monolayer can be driven into the topological insulator phase. Furthermore, one of the ferroelastic phases of pure InBi, which can be obtained by gently straining the paraelastic phase, also possesses such topological insulating properties. Furthermore, these results provide several experimentally accessible routes to tune the nontrivial topology in the InBi monolayer, including creating heterostructures with piezoelectric or ferroelectric substrates and applying mechanical strain, making the InBi monolayer an ideal platform to study the interplay of reduced dimensionality, square-net chemical bonding networks, and band topology.

2-dimensional systems↗

The completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: a catalogue of strong galaxy–galaxy lens candidates

ABSTRACT We spectroscopically detected 838 likely, 448 probable, and 265 possible strong lens candidates within ≈2 million galaxy spectra contained within the extended Baryon Oscillation Spectroscopic Survey (eBOSS) from the sixteenth data release (DR16) of the Sloan Digital Sky Survey (SDSS). We apply the spectroscopic detection method of the Baryon Oscillation Spectroscopic Survey (BOSS) Emission-Line Lens Survey (BELLS) and add Gaussian fit information, grading, additional inspection observables, and additional inspection methods to improve our selection method. We observed 477 candidates with lensing evidence within low-resolution images from both the Legacy survey of SDSS-I/II and the DESI Legacy survey, which is $12{{\ \rm per\ cent}}$ higher than the percentage of BELLS candidates observed with similar lensing evidence. Our search within the latest and improved reductions of the BOSS survey yielded a $20{{\ \rm per\ cent}}$ increase in the number of lens candidates expected from searching all BOSS and eBOSS galaxies. The distribution of target and background redshifts of our candidates is similar to the candidates and confirmed lenses within the BELLS observations. We present our Spectroscopic Identification of Lensing Object candidates in a value-added catalogue in SDSS DR16. The examination of these lens candidates in follow-up high-resolution imaging may yield more than twice the lenses found in previous spectroscopic detection surveys within SDSS, which would extend the results of previous lens surveys within SDSS to higher redshifts, constrain models of mass structures in spiral galaxies, and test if including the identification of possible lensing features within low-resolution images has merit to spectroscopic detection programmes.

Talbot, Michael S.↗

Modeling, system identification, and control of ASTREX

The modeling, system identification and controller design aspects of the ASTREX precision space structure are presented in this work. Modeling of ASTREX is performed using NASTRAN, TREETOPS and I-DEAS. The models generated range from simple linear time-invariant models to nonlinear models used for large angle simulations. Identification in both the time and frequency domains are presented. The experimental set up and the results from the identification experiments are included. Finally, controller design for ASTREX is presented. Simulation results using this optimal controller demonstrate the controller performance. Finally the future directions and plans for the facility are addressed.

Abhyankar, Nandu S.↗

Paired Neural Network for Matching Experimental and Predicted Infrared Spectra

Here, we present a novel machine learning (ML)-based scoring technique for determining the similarity between experimental and predicted infrared (IR) spectra for identification purposes. IR spectroscopy is a powerful technique used to identify the molecular structure and composition of a sample by measuring the unique vibrational frequency pattern of the molecule’s functional groups. Molecular identifications are often made by comparing experimental and reference spectra. However, the limited number of reference spectra available in spectral libraries can confound the identification process. Alternative identification procedures rely on in silico techniques to simulate spectra for a wide range of molecules. However, scoring spectral similarity between an experimental query and computationally predicted reference remains a significant challenge. Our proposed ML-based scoring technique overcomes these barriers by accurately and efficiently determining spectral similarity.

Neural Network↗

A consistent-mode indicator for the eigensystem realization algorithm

A new method is described for assessing the consistency of structural modal parameters identified with the Eigensystem Realization Algorithm. Identification results show varying consistency in practice due to many sources including high modal density, nonlinearity, and inadequate excitation. Consistency is considered to be a reliable indicator of accuracy. The new method is the culmination of many years of experience in developing a practical implementation of the Eigensystem Realization Algorithm. The effectiveness of the method is illustrated using data from NASA Langley's Controls-Structures-Interaction Evolutionary Model.

Pappa, R. S.↗

Identification of radio emission from the Io flux tube

The identification of a specific Jovian decametric emission with the particular flux tube near the orbit of Io giving rise to it would substantially improve theoretical understandings of the relation of the Io flux tubes with the arc-like structures seen on time vs. frequency plots of decametric emissions observed by the Voyager spacecraft. The present paper shows how the instantaneous Io flux tube may be identified with particular emission features. It is demonstrated that the emissions designated Io caused emission (ICE) may be interpreted as representing sections of arc structures emitted by the interaction of Io with successive flux tubes. The model is capable of accounting for the change of displacement angle of the ICE structures as the sub-observed Jovian longitude changes. The identification permits the mapping of emissions onto the causative flux tubes for Jovian longitudes from 240 to 360 deg.

Riddle, A. C.↗

Automated Coronal Loop Identification Using Digital Image Processing Techniques

The results of a master thesis project on a study of computer algorithms for automatic identification of optical-thin, 3-dimensional solar coronal loop centers from extreme ultraviolet and X-ray 2-dimensional images will be presented. These center splines are proxies of associated magnetic field lines. The project is pattern recognition problems in which there are no unique shapes or edges and in which photon and detector noise heavily influence the images. The study explores extraction techniques using: (1) linear feature recognition of local patterns (related to the inertia-tensor concept), (2) parametric space via the Hough transform, and (3) topological adaptive contours (snakes) that constrains curvature and continuity as possible candidates for digital loop detection schemes. We have developed synthesized images for the coronal loops to test the various loop identification algorithms. Since the topology of these solar features is dominated by the magnetic field structure, a first-order magnetic field approximation using multiple dipoles provides a priori information in the identification process. Results from both synthesized and solar images will be presented.

Lee, Jong K.↗

Bioconversion and quantification of humic substances from low rank coals using indigenous fungal isolates

The major portion of coals around the world belongs to lignitic origin, and burning of these Low Rank Coals (LRCs) not only produces energy, but also release harmful gases into the environment. On the other hand, coal is a mega source of fossilized carbon compounds that can be utilized in diverse range of carbon/organic industries. Biosolubilization is one of the safest and economical way to consume these LRCs for the harvest of humic and fulvic acids for industrial applications. Present studies deal with solubilization of coal samples from five different mines of Punjab, Pakistan by indigenously isolated fungus. From a number of indigenously isolated fungal isolates, an isolate NF-2 was selected based on its solubilization potential on solid Sabouraud medium. The intensity of coal biosolubilization was found maximum for coal sample B-1 (59%) and lowest for sample B-26 (17.2%) with 5% (w/v) pulp density at 28 ± 2°C. Humification index value (A 4 /A 6 ) for biosolubilized products of coal sample B-1 was found 6.18 which was much higher than the A 4 /A 6 value (4.27) of commercially available standard humic acid. Biosolubilized products from coal sample B-1 was found maximum with 8681 mg/L humic acid concentration as determined by standard curve method. FTIR and FE-SEM analyses of sample B-1 treated with NF-2 confirmed the structural break down and solubilization of coal. Molecular identification of fungal isolate NF-2 showed 100% similarity to Aspergillus flavus. Here, this work paves the way to utilize lignitic coals for the environment friendly and low-cost production of humic acids by fungal biosolubilization as an alternate to chemical methods.

59 BASIC BIOLOGICAL SCIENCES↗

Molecular basis for cooperative binding and synergy of ATP-site and allosteric EGFR inhibitors

Abstract Lung cancer is frequently caused by activating mutations in the epidermal growth factor receptor (EGFR). Allosteric EGFR inhibitors offer promise as the next generation of therapeutics, as they are unaffected by common ATP-site resistance mutations and synergize with the drug osimertinib. Here, we examine combinations of ATP-competitive and allosteric inhibitors to better understand the molecular basis for synergy. We identify a subset of irreversible EGFR inhibitors that display positive binding cooperativity and synergy with the allosteric inhibitor JBJ-04-125-02 in several EGFR variants. Structural analysis of these complexes reveals conformational changes occur mainly in the phosphate-binding loop (P-loop). Mutation of F723 in the P-loop reduces cooperative binding and synergy, supporting a mechanism in which F723-mediated contacts between the P-loop and the allosteric inhibitor are critical for synergy. These structural and mechanistic insights will aid in the identification and development of additional inhibitor combinations with potential clinical value.

Beyett, Tyler S. (ORCID:0000000155097004)↗

Structural and functional insights into δ-poly-L-ornithine polymer biosynthesis from Acinetobacter baumannii

Cationic homo-polyamino acid (CHPA) peptides containing isopeptide bonds of diamino acids have been identified from Actinomycetes strains. However, none has been reported from other bacteria. Here, we report a δ-poly-L-ornithine synthetase from Acinetobacter baumannii, which we name PosA. Surprisingly, structural analysis of the adenylation domain and biochemical assay shows L-ornithine as the substrate for PosA. The product from the enzymatic reaction was purified and identified as poly-L-ornithine composed of 7-12 amino acid units. Chemical labeling of the polymer confirmed the isopeptide linkage of δ-poly-L-ornithine. We examine the biological activity of chemically synthesized 12-mer δ-poly-L-ornithine, illustrating that the polymer may act as an anti-fungal agent. Structures of the isolated adenylation domain from PosA are presented with several diamino acids and biochemical assays identify important substrate binding residues. Structurally-guided genome-mining led to the identification of homologs with different substrate binding residues that could activate additional substrates. A homolog from Bdellovibrionales sp. shows modest activity with L-arginine but not with any diamino acids observed to be substrates for previously examined CHPA synthetases. Our study indicates the possibility that additional CHPAs may be produced by various microbes, supporting the further exploration of uncharacterized natural products.

59 BASIC BIOLOGICAL SCIENCES↗

Structural analysis of molten materials by a remote fiber optic Raman sensor

This study presents a novel in situ high-temperature fiber optic Raman probe that enables the study of the physical properties and structure of molten samples at temperatures up to 1400 °C. To demonstrate the functionality of the high-temperature fiber optic Raman probe, different composition mold fluxes were evaluated in this report. The Raman spectra at flux molten temperature were successfully collected and analyzed. A deconvolution algorithm was employed to identify peaks in the spectra associated with the molecular structure of the components in each sample. Here, the experimental results demonstrate that the composition-dependent Raman signal shift can be detected at high temperatures, indicating that molten materials analysis using a high-temperature Raman system shows significant promise. This flexible and reliable high-temperature Raman measurement method has great potential for various applications, such as materials development, composition and structure monitoring during high-temperature processing, chemical identification, and process monitoring in industrial production.

47 OTHER INSTRUMENTATION↗

An adaptive technique for a redundant-sensor navigation system.

An on-line adaptive technique is developed to provide a self-contained redundant-sensor navigation system with a capability to utilize its full potentiality in reliability and performance. This adaptive system is structured as a multistage stochastic process of detection, identification, and compensation. It is shown that the detection system can be effectively constructed on the basis of a design value, specified by mission requirements, of the unknown parameter in the actual system, and of a degradation mode in the form of a constant bias jump. A suboptimal detection system on the basis of Wald's sequential analysis is developed using the concept of information value and information feedback. The developed system is easily implemented, and demonstrates a performance remarkably close to that of the optimal nonlinear detection system. An invariant transformation is derived to eliminate the effect of nuisance parameters such that the ambiguous identification system can be reduced to a set of disjoint simple hypotheses tests. By application of a technique of decoupled bias estimation in the compensation system the adaptive system can be operated without any complicated reorganization.

Chien, T.-T.↗

Applications of system identification methods to the prediction of helicopter stability, control and handling characteristics

A set of results on rotorcraft system identification is described. Flight measurements collected on an experimental Puma helicopter are reviewed and some notable characteristics highlighted. Following a brief review of previous work in rotorcraft system identification, the results of state estimation and model structure estimation processes applied to the Puma data are presented. The results, which were obtained using NASA developed software, are compared with theoretical predictions of roll, yaw and pitching moment derivatives for a 6 degree of freedom model structure. Anomalies are reported. The theoretical methods used are described. A framework for reduced order modelling is outlined.

Padfield, G. D.↗