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At least 703 records · Page 39

Spall kinetics model description

Under high-rate loading in tension, metals can sustain much larger tensile stresses for sub-microsecond time periods than would be possible under quasi-static conditions. This type of failure, known as spall, is not adequately reproduced by hydrocodes with commonly used failure models. The Spall Kinetics Model treats spall by incorporating a time scale into the process of failure. Under sufficiently strong tensile states of stress, damage accumulates over this time scale, which can be thought of as an incubation time. The time scale depends on the previous loading history of the material, reflecting possible damage by a shock wave. The model acts by modifying the hydrostatic pressure that is predicted by any equation of state and is therefore simple to implement. Examples illustrate the ability of the model to reproduce the spall stress and resulting release waves in plate impact experiments on stainless steel.

36 MATERIALS SCIENCE↗

Physics-Informed Machine Learning Models for Predicting the Progress of Reactive-Mixing

This paper presents a physics-informed machine learning (ML) framework to construct reduced-order models (ROMs) for reactive-transport quantities of interest (QoIs) based on high-fidelity numerical simu-lations. QoIs include species decay, product yield, and degree of mixing. The ROMs for QoIs are applied to quantify and understand how the chemical species evolve over time. First, high-resolution datasets for constructing ROMs are generated by solving anisotropic reaction-di?usion equations using a non-negative finite element formulation for di?erent input parameters. The reactive-mixing model input parameters are: time-scale associated with flipping of velocity, spatial-scale controlling small/large vortex structures of velocity, perturbation parameter of the vortex-based velocity, anisotropic dispersion strength/contrast, and molecular diffusion. Second, random forests, F-test, and mutual information criterion are used to evaluate the importance of model inputs/features with respect to QoIs. We observed that anisotropic dispersion strength/contrast is the most important feature and time-scale associated with flipping of velocity is the least important feature. Third, Support Vector Machines (SVM) and Support Vector Regression (SVR) are used to construct ROMs based on the model inputs. The constructed SVR-ROMs are then used to predict scaling of QoIs. We also present estimates and inequalities on the QoIs, which inform that the species decay, mix, and produce in an exponential fashion. These inequalities also inform that a radial basis function is the most suitable kernel for the SVM/SVR models for QoIs. It is observed that R2-score for SVR-ROMs on unseen data is greater than 0.9, implying that the SVR-ROMs are able to predict the reaction-diffusion system state reasonably well. Finally, in terms of the computational cost, the proposed SVM-ROMs are O(107) times faster than running a high-fidelity finite element simulation for evaluating QoIs. This makes the proposed ML-based ROMs attractive for reactive-transport sensing and real-time monitoring applications as they are significantly faster yet reasonably accurate.

Mudunuru, Maruti K.↗

Ultrafast dynamics of localized magnetic moments in the unconventional Mott insulator Sr 2 IrO 4

Here, we report a time-resolved study of the ultrafast dynamics of the magnetic moments formed by the ${{J}_{\text{eff}}}=1/2$ states in Sr 2 IrO 4 by directly probing the localized iridium 5d magnetic state through resonant x-ray diffraction. Using optical pump–hard x-ray probe measurements, two relaxation time scales were determined: a fast fluence-independent relaxation is found to take place on a time scale of 1.5 ps, followed by a slower relaxation on a time scale of 500 ps–1.5 ns.

74 ATOMIC AND MOLECULAR PHYSICS↗

On interstellar accretion and the rejuvenation of white dwarfs

The paper investigates physical conditions which can give rise to thermonuclear runaways in the hydrogen envelopes of low-luminosity white dwarfs. Specifically, calculations are performed for white dwarfs of 0.5, 0.75, 1, and 1.25 solar masses with envelope masses in the range from 0.00001 to 0.001 solar mass and initial luminosities of 0.00001 to 0.01 times the solar value. It is found that envelope masses as low as 0.0001 solar mass are sufficient to initiate thermonuclear runaways on more massive white dwarfs with luminosities as low as about 0.001 the solar value. The runaway time scales under these conditions, typically of the order of a billion years, are comparable to the time scales for cooling of white dwarfs to these low luminosities. Since time-averaged accretion rates as low as a few times 10 to the -14th power solar mass per year are sufficient to reconstitute such envelopes, also on a time scale of several billion years, it is suggested that the association of novalike events with binary systems may not be unique. Accretion of interstellar matter onto isolated white dwarfs may, under some circumstances, be sufficient to rekindle and perhaps rejuvenate the dwarf. Such evolutionary behavior might define a new and distinct class of objects.

Truran, J. W.↗

A collision operator for describing dissipation in noncanonical phase space

The phase space of a noncanonical Hamiltonian system is partially inaccessible due to dynamical constraints (Casimir invariants) arising from the kernel of the Poisson tensor. When an ensemble of noncanonical Hamiltonian systems is allowed to interact, dissipative processes eventually break the phase space constraints, resulting in a thermodynamic equilibrium described by a Maxwell–Boltzmann distribution. However, the time scale required to reach Maxwell–Boltzmann statistics is often much longer than the time scale over which a given system achieves a state of thermal equilibrium. Examples include diffusion in rigid mechanical systems, as well as collisionless relaxation in magnetized plasmas and stellar systems, where the interval between binary Coulomb or gravitational collisions can be longer than the time scale over which stable structures are self-organized. Here, we focus on self-organizing phenomena over spacetime scales such that particle interactions respect the noncanonical Hamiltonian structure, but yet act to create a state of thermodynamic equilibrium. We derive a collision operator for general noncanonical Hamiltonian systems, applicable to fast, localized interactions. This collision operator depends on the interaction exchanged by colliding particles and on the Poisson tensor encoding the noncanonical phase space structure, is consistent with entropy growth and conservation of particle number and energy, preserves the interior Casimir invariants, reduces to the Landau collision operator in the limit of grazing binary Coulomb collisions in canonical phase space, and exhibits a metriplectic structure. We further show how thermodynamic equilibria depart from Maxwell–Boltzmann statistics due to the noncanonical phase space structure, and how self-organization and collisionless relaxation in magnetized plasmas and stellar systems can be described through the derived collision operator.

Boltzmann equation↗

The correlated X-ray and optical time variability of TT Arietis

The results of Einstein X-ray observation and simultaneous optical observations of the cataclysmic variable TT Arietis extending over several binary orbits are reported. Evidence is found for correlations between the X-ray and optical variability of TT Ari on three distinct time scales: the 3.3 hour variability that has been associated with the orbital period of the star, the about 1000 s time scale of the irregular flickering activity, and the time scale of quasi-coherent oscillations which have periods of order 10 s. There is a modulation of the X-ray flux with a period consistent with the orbital period of approximately 200 minutes, but there is no apparent modulation of the X-ray spectrum. The optical flux is modulated with a similar period and may lag the X-ray modulation by about 0.1 in phase. The X-ray spectrum is well fitted by a thermal bremsstrahlung plus Gaunt factor model. The results suggest that the hard X-ray emission may be produced in a corona above and below the inner accretion disk.

Jensen, K. A.↗

Demonstration of femtosecond X-ray pump X-ray probe diffraction on protein crystals

The development of X-ray free-electron lasers (XFELs) has opened the possibility to investigate the ultrafast dynamics of biomacromolecules using X-ray diffraction. Whereas an increasing number of structures solved by means of serial femtosecond crystallography at XFELs is available, the effect of radiation damage on protein crystals during ultrafast exposures has remained an open question. We used a split-and-delay line based on diffractive X-ray optics at the Linac Coherent Light Source XFEL to investigate the time dependence of X-ray radiation damage to lysozyme crystals. For these tests, crystals were delivered to the X-ray beam using a fixed-target approach. The presented experiments provide probe signals at eight different delay times between 19 and 213 femtoseconds after a single pump event, thereby covering the time-scales relevant for femtosecond serial crystallography. Even though significant impact on the crystals was observed at long time scales after exposure with a single X-ray pulse, the collected diffraction data did not show significant signal reduction that could be assigned to beam damage on the crystals in the sampled time window and resolution range. This observation is in agreement with estimations of the applied radiation dose, which in our experiment was clearly below the values expected to cause damage on the femtosecond time scale. The experiments presented here demonstrate the feasibility of time-resolved pump-multiprobe X-ray diffraction experiments on protein crystals.

43 PARTICLE ACCELERATORS↗

Growth Kinetics and Size Distribution Dynamics of Viscous Secondary Organic Aerosol

Low bulk diffusivity inside viscous semisolid atmospheric secondary organic aerosol (SOA) can prolong equilibration time scale, but its broader impacts on aerosol growth and size distribution dynamics are poorly understood. In this article, we present quantitative insights into the effects of bulk diffusivity on the growth and evaporation kinetics of SOA formed under dry conditions from photooxidation of isoprene in the presence of a bimodal aerosol consisting of Aitken (ammonium sulfate) and accumulation (isoprene or α-pinene SOA) mode particles. Aerosol composition measurements and evaporation kinetics indicate that isoprene SOA is composed of several semivolatile organic compounds (SVOCs), with some reversibly reacting to form oligomers. Model analysis shows that liquid-like bulk diffusivities can be used to fit the observed evaporation kinetics of accumulation mode particles but fail to explain the growth kinetics of bimodal aerosol by significantly under-predicting the evolution of the Aitken mode. In contrast, the semisolid scenario successfully reproduces both evaporation and growth kinetics, with the interpretation that hindered partitioning of SVOCs into large viscous particles effectively promotes the growth of smaller particles that have shorter diffusion time scales. This effect has important implications for the growth of atmospheric ultrafine particles to climatically active sizes.

54 ENVIRONMENTAL SCIENCES↗

Molecular Dynamics Simulation of Complex Reactivity with the Rapid Approach for Proton Transport and Other Reactions (RAPTOR) Software Package

Simulating chemically reactive phenomena such as proton transport on nanosecond to microsecond and beyond time scales is a challenging task. Ab initio methods are unable to currently access these time scales routinely, and traditional molecular dynamics methods feature fixed bonding arrangements that cannot account for changes in the system’s bonding topology. The Multiscale Reactive Molecular Dynamics (MS-RMD) method, as implemented in the Rapid Approach for Proton Transport and Other Reactions (RAPTOR) software package for the LAMMPS molecular dynamics code, offers a method to routinely sample longer time scale reactive simulation data with statistical precision. RAPTOR may also be interfaced with enhanced sampling methods to drive simulations toward the analysis of reactive rare events, and a number of collective variables (CVs) have been developed to facilitate this. Key advances to this methodology, including GPU acceleration efforts and novel CVs to model water wire formation are reviewed, along with recent applications of the method which demonstrate its versatility and robustness.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Extended inertial range phenomenology of magnetohydrodynamic turbulence

A phenomenological treatment of the inertial range of isotropic statistically steady magnetohydrodynamic turbulence is presented, extending the theory of Kraichnan (1965). The role of Alfven wave propagation is treated on equal footing with nonlinear convection, leading to a simple generalization of the relations between the times characteristic of wave propagation, convection, energy transfer, and decay of triple correlations. The theory leads to a closed-form steady inertial range spectral law that reduces to the Kraichnan and Kolmogorov laws in appropriate limits. The Kraichnan constant is found to be related in a simple way to the Kolmogorov constant; for typical values of the latter constant, the former has values in the range 1.22-1.87. Estimates of the time scale associated with spectral transfer of energy also emerge from the new approach, generalizing previously presented 'golden rules' for relating the spectral transfer time scale to the Alfven and eddy-turnover time scales.

Matthaeus, William H.↗

Revealing and Engineering Assembly Pathways of 3D DNA Origami Crystals

Recent developments in nanomaterial self-assembly demonstrate the capability to create tailored nanostructures by engineering both the binding coordination and specificity of interactions between material subunits. DNA origami frames allow for the design and fabrication of a broad variety of ordered 3D nanoscale architectures through self-assembly, facilitated by frame-to-frame bonds with designable strength and specificity. While the bond design is critical to lattice formation, the assembly process itself is often dependent on a thermal pathway. Highly ordered nanoscale frameworks, assembled from DNA frames, are predominantly crystallized through thermal annealing pathways that typically follow a “slow” cooling approach, with experiments on the time scale of days yielding DNA origami crystals in the range of 1−10 μm. This extended assembly time scale hinders the study of crystal formation pathways, necessitating a deeper understanding of factors governing successful annealing. Lack of insight into time scale also presents a practical limitation for material fabrication. Here, we investigate key factors affecting lattice assembly pathways and demonstrate that precise engineering of assembly conditions greatly reduces assembly times by up to nearly 2 orders of magnitude. We evaluate the nucleation and growth of crystals via optical and electron microscopy, and small-angle X-ray scattering techniques, mapping the time−temperature-transformation of superlattices from the melt through single-crystal optical tracking. The results show that origami frame assembly can be described by classical nucleation and growth theory, which can, in turn, be used to prescribe the growth of the crystals. Lastly, these findings are applied to demonstrate thermal pathway-dependent assembly, forming distinct assemblies based on different thermal annealing profiles.

36 MATERIALS SCIENCE↗

Topology and burning rates of turbulent, lean, H 2 /air flames

Improved understanding of turbulent flames characterized by negative consumption speed-based Markstein lengths is necessary to develop better models for turbulent lean combustion of high hydrogen content fuels. In this paper we investigate the topology and burning rates of turbulent, lean (φ = 0.31), H 2 /air flames obtained from a recently published DNS database (Aspden et al., 2011). We calculate local flame front curvatures, strain rates, thicknesses, and burning velocities and compare these values to reference quantities obtained from stretched laminar flames computed numerically in three model geometrical configurations-a counterflow twin flame, a tubular counterflow flame and an expanding cylindrical flame. We compare and contrast the DNS with these model laminar flame calculations, and show both where they closely correlate with each other, as well as where they do not. These results in the latter case are shown to result from non-flamelet behaviors, unsteady effects, and curvature-strain correlations. These insights are derived from comparisons conditioned on different topological features, such as portions of the flame front with a spherical/cylindrical shape, the leading edge of the flame, and portions of the flame front with low mean curvature. We also show that reference time scales vary appreciably over the flame, and characterizing the relative values of fluid mechanic and kinetic time scales by a single value leads to erroneous conclusions. For example, there is a two order of magnitude decrease in chemical time scales at the leading edge of the front relative to its unstretched value. In conclusion, for this reason, the leading edge of the front quite closely tracks quasi-steady calculations, even in the lowest Damköhler number case, Da F ~0.005

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Long-range energy transport in photosystem II

We simulate the long-range inter-complex electronic energy transfer in photosystem II—from the antenna complex, via a core complex, to the reaction center—using a non-Markovian (ZOFE) quantum master equation description that allows the electronic coherence involved in the energy transfer to be explicitly included at all length scales. This allows us to identify all locations where coherence is manifested and to further identify the pathways of the energy transfer in the full network of coupled chromophores using a description based on excitation probability currents. We investigate how the energy transfer depends on the initial excitation—localized, coherent initial excitation versus delocalized, incoherent initial excitation—and find that the overall energy transfer is remarkably robust with respect to such strong variations of the initial condition. To explore the importance of vibrationally enhanced transfer and to address the question of optimization in the system parameters, we systematically vary the strength of the coupling between the electronic and the vibrational degrees of freedom. We find that the natural parameters lie in a (broad) region that enables optimal transfer efficiency and that the overall long-range energy transfer on a ns time scale appears to be very robust with respect to variations in the vibronic coupling of up to an order of magnitude. Nevertheless, vibrationally enhanced transfer appears to be crucial to obtain a high transfer efficiency, with the latter falling sharply for couplings outside the optimal range. Comparison of our full quantum simulations to results obtained with a “classical” rate equation based on a modified-Redfield/generalized-Förster description previously used to simulate energy transfer dynamics in the entire photosystem II complex shows good agreement for the overall time scales of excitation energy transport.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

An analysis of hydrated proton diffusion in ab initio molecular dynamics

A detailed understanding of the inherently multiscale proton transport process raises a number of scientifically challenging questions. For example, there remain many (partially addressed) questions on the molecular mechanism for long-range proton migration and the potential for the formation of long-lived traps giving rise to burst-and-rest proton dynamics. Using results from a sizeable collection of ab initio molecular dynamics (AIMD) simulations (totaling ∼2.7 ns) with various density functional approximations (Becke-Lee-Yang-Parr (BLYP), BLYP–D3, Hamprecht-Cohen-Tozer-Handy, B3LYP) and temperatures (300–330 K), equilibrium and dynamical properties of one excess proton and 128 water molecules are studied. Two features in particular (concerted hops and weak hydrogen-bond donors) are investigated to identify modes in the system that are strongly correlated with the onset of periods of burst-and-rest dynamics. The question of concerted hops seeks to identify those time scales over which long-range proton transport can be classified as a series of sequential water hopping events or as a near-simultaneous concerted process along compressed water wires. The coupling of the observed burst-and-rest dynamics with motions of a fourth neighboring water molecule (a weak hydrogen-bond donor) solvating the protonated water molecule is also investigated. The presence (absence) of hydrogen bonds involving this fourth water molecule before and after successful proton hopping events is found to be strongly correlated with periods of burst (rest) dynamics (and consistent with pre-solvation concepts). By analyzing several realizations of the AIMD trajectories on the 100-ps time scale, convergence of statistics can be assessed. For instance, it was observed that the probability for a fourth water molecule to approach the hydronium, if not already proximal at the beginning of the lifetime of the hydronium, is very low, indicative of the formation of stable void regions. Furthermore, the correlations of the neighboring water atoms are identified as the fourth water approaches the hydronium. Finally, the temperature effects on structural and dynamical properties are studied.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Combining Iteration-Free Polarization with Large Time Step Stochastic-Isokinetic Integration

In order to accelerate molecular dynamics simulations using polarizable force fields, we combine a new extended Lagrangian approach that eliminates the self-consistent field step (iEL/0-SCF) with a stochastic integration scheme that allows for a long time step using a multiple time scale algorithm (SIN(R)). We consider different algorithms for the combined scheme that places different components of the nonbonded forces into different time scales, as well as splitting individual nonbonded forces across time scales, to demonstrate that the combined method works well for bulk water as well as for a concentrated salt solution, aqueous peptide, and solvated protein. Depending on system and desired accuracy, the iEL/0-SCF and SIN(R) combination yields lower bound computational speed-ups of ~6–8 relative to a molecular dynamics Verlet integration using a standard SCF solver implemented in the reference program TINKER 8.1. Finally, the combined approach embodies a significant advance for equilibrium simulations in the canonical ensemble of many-body potential energy surfaces for condensed phase systems with speed-ups that exceed what is possible by either method alone.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Production of high fluence laser beams using ion wave plasma optics

Optical components for laser beams with high peak and averaged powers are being developed worldwide using stimulated plasma scattering that occurs when plasmas interact with intense, coherent light. After decades of pursuit of pulse compressors, mirrors, and other plasma based components that can be created by stimulated scattering from electron density perturbations forming on ultra-short time scales (e.g., via Stimulated Raman Scattering), more recent work has produced optical components on longer time scales allowing ion motion as well [via Stimulated Brillouin Scattering (SBS)]. In the most recent work, ion wave plasma optics have had success in producing pulses of focusable coherent light with high energy and fluence by operating on ns time scales and now promise to enable numerous applications. Experiments have further shown that in some parameter regimes, even simple plasma response models can describe the output of such optics with sufficient accuracy that they can be used as engineering tools to design plasma optics for future applications, as is already being done to control power deposition in fusion targets. In addition, the development of more sophisticated models promises to enable still higher performance from SBS driven plasma optical components under a wider range of conditions. The present status and most promising directions for future development of ion wave plasma optic techniques are discussed here.

47 OTHER INSTRUMENTATION↗

Climate Model Evaluation using New Datasets from the Clouds and the Earth's Radiant Energy System (CERES)

There are some in the science community who believe that the response of the climate system to anthropogenic radiative forcing is unpredictable and we should therefore call off the quest . The key limitation in climate predictability is associated with cloud feedback. Narrowing the uncertainty in cloud feedback (and therefore climate sensitivity) requires optimal use of the best available observations to evaluate and improve climate model processes and constrain climate model simulations over longer time scales. The Clouds and the Earth s Radiant Energy System (CERES) is a satellite-based program that provides global cloud, aerosol and radiative flux observations for improving our understanding of cloud-aerosol-radiation feedbacks in the Earth s climate system. CERES is the successor to the Earth Radiation Budget Experiment (ERBE), which has widely been used to evaluate climate models both at short time scales (e.g., process studies) and at decadal time scales. A CERES instrument flew on the TRMM satellite and captured the dramatic 1998 El Nino, and four other CERES instruments are currently flying aboard the Terra and Aqua platforms. Plans are underway to fly the remaining copy of CERES on the upcoming NPP spacecraft (mid-2010 launch date). Every aspect of CERES represents a significant improvement over ERBE. While both CERES and ERBE measure broadband radiation, CERES calibration is a factor of 2 better than ERBE. In order to improve the characterization of clouds and aerosols within a CERES footprint, we use coincident higher-resolution imager observations (VIRS, MODIS or VIIRS) to provide a consistent cloud-aerosol-radiation dataset at climate accuracy. Improved radiative fluxes are obtained by using new CERES-derived Angular Distribution Models (ADMs) for converting measured radiances to fluxes. CERES radiative fluxes are a factor of 2 more accurate than ERBE overall, but the improvement by cloud type and at high latitudes can be as high as a factor of 5. Diurnal cycles are explicitly resolved by merging geostationary satellite observations with CERES and MODIS. Atmospheric state data are provided from a frozen version of the Global Modeling and Assimilation Office- Data Assimilation System at the NASA Goddard Space Flight Center. In addition to improving the accuracy of top-of-atmosphere (TOA) radiative fluxes, CERES also produces radiative fluxes at the surface and at several levels in the atmosphere using radiative transfer modeling, constrained at the TOA by CERES (ERBE was limited to the TOA). In all, CERES uses 11 instruments on 7 spacecraft all integrated to obtain climate accuracy in TOA to surface fluxes. This presentation will provide an overview of several new CERES datasets of interest to the climate community (including a new adjusted TOA flux dataset constrained by estimates of heat storage in the Earth system), show direct comparisons between CERES ad ERBE, and provide a detailed error analysis of CERES fluxes at various time and space scales. We discuss how observations can be used to reduce uncertainties in cloud feedback and climate sensitivity and strongly argue why we should NOT "call off the quest".

Loeb, Norman G.↗