Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “Population estimates”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 703 records · Page 39
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Lineage frequency time series reveal elevated levels of genetic drift in SARS-CoV-2 transmission in England

Genetic drift in infectious disease transmission results from randomness of transmission and host recovery or death. The strength of genetic drift for SARS-CoV-2 transmission is expected to be high due to high levels of superspreading, and this is expected to substantially impact disease epidemiology and evolution. However, we don’t yet have an understanding of how genetic drift changes over time or across locations. Furthermore, noise that results from data collection can potentially confound estimates of genetic drift. To address this challenge, we develop and validate a method to jointly infer genetic drift and measurement noise from time-series lineage frequency data. Our method is highly scalable to increasingly large genomic datasets, which overcomes a limitation in commonly used phylogenetic methods. We apply this method to over 490,000 SARS-CoV-2 genomic sequences from England collected between March 2020 and December 2021 by the COVID-19 Genomics UK (COG-UK) consortium and separately infer the strength of genetic drift for pre-B.1.177, B.1.177, Alpha, and Delta. We find that even after correcting for measurement noise, the strength of genetic drift is consistently, throughout time, higher than that expected from the observed number of COVID-19 positive individuals in England by 1 to 3 orders of magnitude, which cannot be explained by literature values of superspreading. Our estimates of genetic drift suggest low and time-varying establishment probabilities for new mutations, inform the parametrization of SARS-CoV-2 evolutionary models, and motivate future studies of the potential mechanisms for increased stochasticity in this system.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2020

Comparison of stellar populations in simulated and real post-starburst galaxies in MaNGA

ABSTRACT Recent integral field spectroscopic (IFS) surveys have revealed radial gradients in the optical spectral indices of post-starburst (PSB) galaxies, which can be used to constrain their formation histories. We study the spectral indices of post-processed mock IFS datacubes of binary merger simulations, carefully matched to the properties of the MaNGA IFS survey, with a variety of black hole (BH) feedback models, progenitor galaxies, orbits, and mass ratios. Based on our simulation sample, we find that only major mergers on prograde–prograde or retrograde–prograde orbits in combination with a mechanical BH feedback model can form galaxies with weak enough ongoing star formation, and therefore absent H α emission, to be selected by traditional PSB selection methods. We find strong fluctuations in nebular emission line strengths, even within the PSB phase, suggesting that H α selected PSBs are only a subsample of the underlying population. The global PSB population can be more robustly identified using stellar continuum-based approaches. The difficulty in reproducing the very young PSBs in simulations potentially indicates that new sub-resolution star formation recipes are required to properly model the process of star formation quenching. In our simulations, we find that the starburst peaks at the same time at all radii, but is stronger and more prolonged in the inner regions. This results in a strong time evolution in the radial gradients of the spectral indices that can be used to estimate the age of the starburst without reliance on detailed star formation histories from spectral synthesis models.

Zheng, Yirui↗
DOE OSTI2021

Synthetic galaxy clusters and observations based on Dark Energy Survey Year 3 Data

ABSTRACT We develop a novel data-driven method for generating synthetic optical observations of galaxy clusters. In cluster weak lensing, the interplay between analysis choices and systematic effects related to source galaxy selection, shape measurement, and photometric redshift estimation can be best characterized in end-to-end tests going from mock observations to recovered cluster masses. To create such test scenarios, we measure and model the photometric properties of galaxy clusters and their sky environments from the Dark Energy Survey Year 3 (DES Y3) data in two bins of cluster richness $\lambda \in [30; 45)$, $\lambda \in [45; 60)$ and three bins in cluster redshift ($z\in [0.3; 0.35)$, $z\in [0.45; 0.5)$ and $z\in [0.6; 0.65)$. Using deep-field imaging data, we extrapolate galaxy populations beyond the limiting magnitude of DES Y3 and calculate the properties of cluster member galaxies via statistical background subtraction. We construct mock galaxy clusters as random draws from a distribution function, and render mock clusters and line-of-sight catalogues into synthetic images in the same format as actual survey observations. Synthetic galaxy clusters are generated from real observational data, and thus are independent from the assumptions inherent to cosmological simulations. The recipe can be straightforwardly modified to incorporate extra information, and correct for survey incompleteness. New realizations of synthetic clusters can be created at minimal cost, which will allow future analyses to generate the large number of images needed to characterize systematic uncertainties in cluster mass measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2021

The Most Massive White Dwarfs in the Solar Neighborhood

We present an analysis of the most massive white dwarf candidates in the Montreal White Dwarf Database 100 pc sample. We identify 25 objects that would be more massive than 1.3M ⊙ if they had pure H atmospheres and CO cores, including two outliers with unusually high photometric mass estimates near the Chandrasekhar limit. We provide follow-up spectroscopy of these two white dwarfs and show that they are indeed significantly below this limit. We expand our model calculations for CO core white dwarfs up to M = 1.334 M ⊙ , which corresponds to the high-density limit of our equation-of-state tables, ρ = 109 g cm -3 . We find many objects close to this maximum mass of our CO core models. A significant fraction of ultramassive white dwarfs are predicted to form through binary mergers. Merger populations can reveal themselves through their kinematics, magnetism, or rapid rotation rates. We identify four outliers in transverse velocity, four likely magnetic white dwarfs (one of which is also an outlier in transverse velocity), and one with rapid rotation, indicating that at least 8 of the 25 ultramassive white dwarfs in our sample are likely merger products.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Improving probabilistic infectious disease forecasting through coherence

With an estimated $10.4 billion in medical costs and 31.4 million outpatient visits each year, influenza poses a serious burden of disease in the United States. To provide insights and advance warning into the spread of influenza, the U.S. Centers for Disease Control and Prevention (CDC) runs a challenge for forecasting weighted influenza-like illness (wILI) at the national and regional level. Many models produce independent forecasts for each geographical unit, ignoring the constraint that the national wILI is a weighted sum of regional wILI, where the weights correspond to the population size of the region. We propose a novel algorithm that transforms a set of independent forecast distributions to obey this constraint, which we refer to as probabilistically coherent. Enforcing probabilistic coherence led to an increase in forecast skill for 79% of the models we tested over multiple flu seasons, highlighting the importance of respecting the forecasting system’s geographical hierarchy.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

Searching for Spectroscopic Signatures of Ongoing Quenching in SDSS Galaxies

In this paper, we estimate the “star formation change parameter,” SFR 79 , which characterizes the current SFR relative to the average during the last 800 Myr, for ~300,000 galaxies selected from the Sloan Digital Sky Survey (SDSS). The goals are to examine, in a much larger and independent sample, the trends previously reported in a sample of star-forming (SF) MaNGA galaxies and also to search for spectroscopic signatures of ongoing quenching in the so-called “Green Valley,” which is generally believed to contain galaxies that are migrating from the SF population to the quenched population of galaxies. Measuring SFR 79 for our large sample of SDSS galaxies, we first confirm the basic results of SF galaxies published by Wang & Lilly. We then discuss in detail the calibration and meaning of SFR 79 for galaxies that are well below the SFMS and establish the expected statistical signature of systematic ongoing quenching from modeling the z ~ 0 quenching rate of the SF population. We conclude that it is not possible at present to establish unambiguous observational evidence for systematic ongoing quenching processes, due to limitations both in the noise of the observational data, in particular in the measurements of H δ absorption, and in the calibration of SFR 79 , as well as biases introduced by the necessity of selecting objects with significant H α emission. We do however see plausible indications of ongoing quenching, which are quantitatively consistent with expectations from “growth+quenching” models of galaxy evolution and a typical e-folding timescale for quenching of ~500 Myr.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

A Sheaf Theoretical Approach to Uncertainty Quantification of Heterogeneous Geolocation Information

Integration of multiple, heterogeneous sensors is a challenging problem across a range of applications. Prominent among these are multi-target tracking, where one must combine observations from different sensor types in a meaningful and efficient way to track multiple targets. Because different sensors have differing error models, we seek a theoretically justified quantification of the agreement among ensembles of sensors, both overall for a sensor collection, and also at a fine-grained level specifying pairwise and multi-way interactions among sensors. We demonstrate that the theory of mathematical sheaves provides a unified answer to this need, supporting both quantitative and qualitative data. Furthermore, the theory provides algorithms to globalize data across the network of deployed sensors, and to diagnose issues when the data do not globalize cleanly. We demonstrate and illustrate the utility of sheaf-based tracking models based on experimental data of a wild population of black bears in Asheville, North Carolina. A measurement model involving four sensors deployed among the bears and the team of scientists charged with tracking their location is deployed. This provides a sheaf-based integration model which is small enough to fully interpret, but of sufficient complexity to demonstrate the sheaf’s ability to recover a holistic picture of the locations and behaviors of both individual bears and the bear-human tracking system. A statistical approach was developed in parallel for comparison, a dynamic linear model which was estimated using a Kalman filter. This approach also recovered bear and human locations and sensor accuracies. When the observations are normalized into a common coordinate system, the structure of the dynamic linear observation model recapitulates the structure of the sheaf model, demonstrating the canonicity of the sheaf-based approach. However, when the observations are not so normalized, the sheaf model still remains valid.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Estimating the strength of selection for new SARS-CoV-2 variants

Abstract Controlling the SARS-CoV-2 pandemic becomes increasingly challenging as the virus adapts to human hosts through the continual emergence of more transmissible variants. Simply observing that a variant is increasing in frequency is relatively straightforward, but more sophisticated methodology is needed to determine whether a new variant is a global threat and the magnitude of its selective advantage. We present two models for quantifying the strength of selection for new and emerging variants of SARS-CoV-2 relative to the background of contemporaneous variants. These methods range from a detailed model of dynamics within one country to a broad analysis across all countries, and they include alternative explanations such as migration and drift. We find evidence for strong selection favoring the D614G spike mutation and B.1.1.7 (Alpha), weaker selection favoring B.1.351 (Beta), and no advantage of R.1 after it spreads beyond Japan. Cutting back data to earlier time horizons reveals that uncertainty is large very soon after emergence, but that estimates of selection stabilize after several weeks. Our results also show substantial heterogeneity among countries, demonstrating the need for a truly global perspective on the molecular epidemiology of SARS-CoV-2.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

The High Fraction of Thin Disk Galaxies Continues to Challenge ΛCDM Cosmology

Any viable cosmological framework has to match the observed proportion of early- and late-type galaxies. In this contribution, we focus on the distribution of galaxy morphological types in the standard model of cosmology (Lambda cold dark matter, ΛCDM). Using the latest state-of-the-art cosmological ΛCDM simulations known as Illustris, IllustrisTNG, and EAGLE, we calculate the intrinsic and sky-projected aspect ratio distribution of the stars in subhalos with stellar mass M * > 10 10 M ⊙ at redshift z = 0. There is a significant deficit of intrinsically thin disk galaxies, which however comprise most of the locally observed galaxy population. Consequently, the sky-projected aspect ratio distribution produced by these ΛCDM simulations disagrees with the Galaxy And Mass Assembly (GAMA) survey and Sloan Digital Sky Survey at ≥12.52σ (TNG50-1) and ≥14.82σ (EAGLE50) confidence. The deficit of intrinsically thin galaxies could be due to a much less hierarchical merger-driven build-up of observed galaxies than is given by the ΛCDM framework. It might also arise from the implemented sub-grid models, or from the limited resolution of the above-mentioned hydrodynamical simulations. We estimate that an 8 5 times better mass resolution realization than TNG50-1 would reduce the tension with GAMA to the 5.58σ level. Finally, we show that galaxies with fewer major mergers have a somewhat thinner aspect ratio distribution. Given also the high expected frequency of minor mergers in ΛCDM, the problem may be due to minor mergers. In this case, the angular momentum problem could be alleviated in Milgromian dynamics because of a reduced merger frequency arising from the absence of dynamical friction between extended dark matter halos.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

Inferring the Redshift of More than 150 GRBs with a Machine-learning Ensemble Model

Gamma-ray bursts (GRBs), due to their high luminosities, are detected up to a redshift of 10, and thus have the potential to be vital cosmological probes of early processes in the Universe. Fulfilling this potential requires a large sample of GRBs with known redshifts, but due to observational limitations, only 11% have known redshifts (z). There have been numerous attempts to estimate redshifts via correlation studies, most of which have led to inaccurate predictions. To overcome this, we estimated GRB redshift via an ensemble-supervised machine-learning (ML) model that uses X-ray afterglows of long-duration GRBs observed by the Neil Gehrels Swift Observatory. The estimated redshifts are strongly correlated (a Pearson coefficient of 0.93) and have an rms error, namely, the square root of the average squared error $\langle$Δz 2 $\rangle$, of 0.46 with the observed redshifts showing the reliability of this method. The addition of GRB afterglow parameters improves the predictions considerably by 63% compared to previous results in peer-reviewed literature. Finally, we use our ML model to infer the redshifts of 154 GRBs, which increase the known redshifts of long GRBs with plateaus by 94%, a significant milestone for enhancing GRB population studies that require large samples with redshift.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Data-driven chemical kinetic reaction mechanism for F-24 jet fuel ignition

A data-driven chemical kinetic mechanism for the military version of Jet A, F-24, is developed for numerical simulations of the ignition process. The main purpose of this study is to obtain a practical F-24 mechanism across wide temperature and equivalence ratio ranges, with a particular focus on the negative temperature coefficient and low temperature regions. The new mechanism (ARLMech-HC-F24) is based on the HyChem model of a similar fuel and optimized using a micro-genetic algorithm against an experimental ignition delay data set of the target fuel. The development and optimization processes include reaction selection, population creation, shuffled tournament implementation based on a merit function, and child-individual creation for the next generation. Several techniques and parameters are proposed to generate an accurate mechanism through an efficient process. The newly introduced data-driven mechanism based on these techniques shows better merit value convergence and represents the ignition behavior more accurately than that without the techniques. This practical mechanism is suitable for the numerical simulations of the F-24 or Jet A ignition problem, and the suggested strategies can be employed in similar problems of rate coefficients estimation.

42 ENGINEERING↗
DOE OSTI2022

Characterizing the gene–environment interaction underlying natural morphological variation in Neurospora crassa conidiophores using high-throughput phenomics and transcriptomics

Abstract Neurospora crassa propagates through dissemination of conidia, which develop through specialized structures called conidiophores. Recent work has identified striking variation in conidiophore morphology, using a wild population collection from Louisiana, United States of America to classify 3 distinct phenotypes: Wild-Type, Wrap, and Bulky. Little is known about the impact of these phenotypes on sporulation or germination later in the N. crassa life cycle, or about the genetic variation that underlies them. In this study, we show that conidiophore morphology likely affects colonization capacity of wild N. crassa isolates through both sporulation distance and germination on different carbon sources. We generated and crossed homokaryotic strains belonging to each phenotypic group to more robustly fit a model for and estimate heritability of the complex trait, conidiophore architecture. Our fitted model suggests at least 3 genes and 2 epistatic interactions contribute to conidiophore phenotype, which has an estimated heritability of 0.47. To uncover genes contributing to these phenotypes, we performed RNA-sequencing on mycelia and conidiophores of strains representing each of the 3 phenotypes. Our results show that the Bulky strain had a distinct transcriptional profile from that of Wild-Type and Wrap, exhibiting differential expression patterns in clock-controlled genes (ccgs), the conidiation-specific gene con-6, and genes implicated in metabolism and communication. Combined, these results present novel ecological impacts of and differential gene expression underlying natural conidiophore morphological variation, a complex trait that has not yet been thoroughly explored.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

The brown dwarf population in the star-forming region NGC 2264

ABSTRACT The brown dwarf population in the canonical star-forming region NGC 2264 is so far poorly explored. We present a deep, multiwavelength, multiepoch survey of the star-forming cluster NGC 2264, aimed to identify young brown dwarf candidates in this region. Using criteria including optical/near-infrared (IR) colours, variability, Spitzer mid-IR colour excess, extinction, and Gaia parallax and proper motion (in order of relevance), we select 902 faint red sources with indicators of youth. Within this sample, we identify 429 brown dwarf candidates based on their IR colours. The brown dwarf candidates are estimated to span a mass range from 0.01 to 0.08 M⊙. We find rotation periods for 44 sources, 15 of which are brown dwarf candidates, ranging from 3.6 h to 6.5 d. A subset of 38 brown dwarf candidates show high-level irregular variability indicative of ongoing disc accretion, similar to the behaviour of young stars.

Pearson, Samuel↗
DOE OSTI2022

DNA Sequence-Based Identification of Fusarium : A Work in Progress

Accurate species-level identification of an etiological agent is crucial for disease diagnosis and management because knowing the agent’s identity connects it with what is known about its host range, geographic distribution, and toxin production potential. This is particularly true in publishing peer-reviewed disease reports, where imprecise and/or incorrect identifications weaken the public knowledge base. This can be a daunting task for phytopathologists and other applied biologists that need to identify Fusarium in particular, because published and ongoing multilocus molecular systematic studies have highlighted several confounding issues. Paramount among these are: (i) this agriculturally and clinically important genus is currently estimated to comprise more than 400 phylogenetically distinct species (i.e., phylospecies), with more than 80% of these discovered within the past 25 years; (ii) approximately one-third of the phylospecies have not been formally described; (iii) morphology alone is inadequate to distinguish most of these species from one another; and (iv) the current rapid discovery of novel fusaria from pathogen surveys and accompanying impact on the taxonomic landscape is expected to continue well into the foreseeable future. To address the critical need for accurate pathogen identification, our research groups are focused on populating two web-accessible databases (FUSARIUM-ID v.3.0 and the nonredundant National Center for Biotechnology Information nucleotide collection that includes GenBank) with portions of three phylogenetically informative genes (i.e., TEF1, RPB1, and RPB2) that resolve at or near the species level in every Fusarium species. The objectives of this Special Report, and its companion in this issue ( Torres-Cruz et al. 2022 ), are to provide a progress report on our efforts to populate these databases and to outline a set of best practices for DNA sequence-based identification of fusaria.

Plant Sciences↗
DOE OSTI2021

ShopperWorkerRatio

These data characterize spatial and temporal variation in the ratio between shoppers and workers in public places - points of interest - in the United States between 2019 and 2020. The underlying data on foot traffic to public places is collected by SafeGraph, a commercial data aggregator. We estimate the ratio of shoppers to workers based on recorded visit duration.These data may be useful for understanding how use of public spaces have changed during the Coronavirus pandemic, and more generally for understanding activity patterns in public.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2025

NeuralMie (v1.0): an aerosol optics emulator

The direct interactions of atmospheric aerosols with radiation significantly impact the Earth's climate and weather and are important to represent accurately in simulations of the atmosphere. This work introduces two contributions to enable a more accurate representation of aerosol optics in atmosphere models: (1) NeuralMie, a neural network Mie scattering emulator that can directly compute the bulk optical properties of a diverse range of aerosol populations and is appropriate for use in atmosphere simulations where aerosol optical properties are parameterized, and (2) TAMie, a fast Python-based Mie scattering code based on the Toon and Ackerman (1981) Mie scattering algorithm that can represent both homogeneous and coated particles. TAMie achieves speed and accuracy comparable to established Fortran Mie codes and is used to produce training data for NeuralMie. NeuralMie is highly flexible and can be used for a wide range of particle types, wavelengths, and mixing assumptions. It can represent core-shell scattering and, by directly estimating bulk optical properties, is more efficient than existing Mie code and Mie code emulators while incurring negligible error compared to existing aerosol optics parameterization schemes (0.08 % mean absolute percentage error).

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

SDSS IV MaNGA - star-formation driven biconical outflows in face-on galaxies

ABSTRACT We find 132 face-on and low inclination galaxies with central star formation driven biconical gas outflows (FSFB) in the SDSS MaNGA (Mapping Nearby Galaxies at APO) survey. The FSFB galaxies show either double peaked or broadened emission line profiles at their centres. The peak and maximum outflow velocities are 58 and 212 km s−1, respectively. The gas velocity dispersion reveals a mild dependence on the central star formation surface density compatible with models of gas dispersion powered by the Jeans instability in gas clumps or by gas turbulence dissipation. We estimate the gas outflow rate and conclude that the central gas depletion time does not depend on galactic mass. In turn, the ratio of the gas outflow rate to the gas consumption rate by the star formation is low in massive galaxies and high in low mass objects, while the star formation is a more rapid process of the gas consumption. We compare properties of the FSFB galaxies with a control sample of 375 comparison galaxies and find that the FSFB objects have high central concentration of star formation and also younger central stellar population with respect to their periphery. We analysed the environment of the galaxies and identified nearby satellites and elements of low surface brightness structure. We see that many tidal-enhanced features that can be assigned to early and intermediate stages of galactic interaction are much more frequent in the FSFB galaxies with respect to the comparison sample. We conclude that the gas should be replenished via the accretion from small satellites.

Bizyaev, D. (ORCID:000000023601133X)↗
DOE OSTI2021

XMP gas-rich dwarfs in nearby voids: results of BTA spectroscopy

We present the second part of results of the ongoing project aimed at searching for and studying eXtremely Metal-Poor (XMP) – adopted as those with Z gas ≲ Z ⊙ /30, or with 12+log (O/H) ≲ 7.21 dex - very gas-rich blue dwarfs in voids. They were first identified in the course of the ‘unbiased’ study of the galaxy population in the nearby Lynx–Cancer void. These very rare and unusual galaxies seem to be the best proxies of so-called Very Young Galaxies (VYGs) defined recently in model simulations by Tweed et al. To date, for 16 pre-selected void XMP candidates, using the Big Telescope Alt-azimuth (BTA), the SAO 6-m telescope, we have obtained spectra suitable for the determination of O/H. For majority of the observed galaxies, the principal line [O iii] λ4363 , used for the direct classical T e method of O/H determination, is undetected. Therefore, to estimate O/H, we use a new ‘strong-lines’ method by Izotov et al. This appears to be the most accurate empirical O/H estimator for the range of 12+log (O/H) ≲ 7.4–7.5. For objects with higher O/H, we use the semi-empirical method by Izotov & Thuan with our modification accounting for variance of the excitation parameter O 32 . Six of those 16 candidates are found, with confidence, to be XMP dwarfs. In addition, eight studied galaxies are less metal-poor, with 12+log (O/H) = 7.24–7.33, and these can also fall into the category of VYG candidates. Taking into account our recently published work and the previously known (nine prototype galaxies) XMP gas-rich void objects, the new findings increase the number of this type of galaxy known to date to a total of 19.

79 ASTRONOMY AND ASTROPHYSICS↗