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At least 703 records · Page 39

Challenges in spatial metabolomics and proteomics for functional tissue unit and single-cell resolution

While transcriptomics is the most broadly applied technology for global spatial and single cell measurements in healthy and diseased tissues. Transcripts are often used as a proxy for protein and even metabolite measurements, but it has become commonly accepted that extrapolating this kind of information is a poor proxy and not a substitute for direct measurement. Within the last decade advanced developments of mass spectrometry-based assays have made these direct measurements not only possible, but routine. Where mass spectrometry has become an enabling technology, and various methods can now detect hundreds of metabolites and thousands of proteins from samples. Not only can this be performed within bulk measurements, but much effort has been directed into translating these measurements to single cells and tissues at cellular resolution. The information obtained from mass spectrometry is now able to trace metabolic events and decipher feedback loops across anatomical regions, connecting genetic and metabolic networks that define phenotypes. Herein, we will broadly overview developments in the field over the past decade, leading into several case studies which highlight the direct measurement of metabolites, proteins, and proteoforms from thinly sliced tissues. Much of this work is feasible due to multidisciplinary team science, and we offer brief perspective on paths forward and the challenges that persist with adoption and application of spatial omics.

59 BASIC BIOLOGICAL SCIENCES↗

C 12 ( n , n 1 ′ γ ) partial γ -ray cross section measured using the GENESIS array

Improved neutron inelastic scattering cross sections have repeatedly been identified as a top priority nuclear data need, important for basic science and a range of applications in nuclear energy, stockpile stewardship, and proliferation detection. For the C 12 ( n , n ′ γ ) reaction in particular, recent measurements have unveiled some structural discrepancies, demonstrating incongruities among themselves and in relation to the ENDF/B-VIII.0 nuclear data evaluation. To help resolve these disagreements, a measurement was performed at the 88-Inch Cyclotron at Lawrence Berkeley National Laboratory using a broad-spectrum neutron beam and a 99.8% pure natural carbon target. The Gamma Energy Neutron Energy Spectrometer for Inelastic Scattering (GENESIS) was employed to measure energy-differential γ -ray emission spectra as a function of incident neutron energy in the energy range of 5.5 to 16.7 MeV. The C 12 partial γ -ray cross sections were extracted at 63 ∘ , 122 . 5 ∘ , and 150 ∘ with respect to the incoming neutron beam and integrated using angular distribution data available in the literature. The data show agreement with a recent literature measurement and evaluation from 11 to 15 MeV, but indicate a larger cross section for incident neutron energies between 5.5 and 8.5 MeV. The measured relative angular distributions are also reported and were found to agree with evaluation. Published by the American Physical Society 2025

Gordon, J. M. (ORCID:0009000789886897)↗

Accurate expressions for the dew point and frost point derived from the Rankine-Kirchhoff approximations

Accurate, explicit, and analytic expressions are derived for the dew point and frost point as functions of temperature and relative humidity. These are derived theoretically in terms of physical constants using the Rankine-Kirchhoff approximations, which assume an ideal gas, fixed heat capacities, and zero specific volume of condensates. Compared to modern laboratory measurements, the expressions are accurate to within a few hundredths of a degree over the full range of Earth-relevant temperatures, from 180 to 273 K for the frost point and 230 to 330 K for the dew point.

54 ENVIRONMENTAL SCIENCES↗

Canopy spectra, Feb2017, PA-SLZ: Panama

Canopy spectra of sunlit canopy of Guarea kunthiana, Brosimum utile, Terminalia amazonia (TERMAM), Vochysia ferruginea (VOCHFE), Miconia borealis (MICOBO) and Guatteria dumetorum (GUATDU) species from the Smithsonian Tropical Research Institute (STRI) canopy crane site in the San Lorenzo National Park, Republic of Panama (PA-SLZ: Bosque Protector San Lorenzo). Canopy spectra were measured at 1:20 – 2 pm on 22 February 2017, using a SVC spectroradiometer. This data package includes the raw SVC data (*.sig), processed data of individual spectra, and processed spectra averaged over the canopy of each of the six trees measured (*.csv). The package also includes photographs of the canopy spectral targets, metadata and the instrument manual. This data was collected as part of the 2017 Brookhaven National Laboratory – Smithsonian Tropical Research Institute leaf traits by age campaign.

54 ENVIRONMENTAL SCIENCES↗

Proper use of HHDRIFT in surveillance and production conditions

With higher quality optics, newer benchtop DRIFT (diffuse reflectance infrared Fourier transform) spectroscopy systems with modern electronic circuitries should be the preferred choice if detection sensitivity, intensity, and reliability are top priorities. However, when space consideration or other restrictions require the use of a HHDRIFT (handheld DRIFT), it is possible to convert the measurements of the HHDRIFT to those obtained from any benchtop DRIFT and vice versa. In this report, the conversion of the measurements between a HHDRIFT and a benchtop DRIFT at LLNL (Lawrence Livermore National Laboratory) are shown to be linear in both production and surveillance conditions. A similar methodology can be used to obtain the measurement correlations between any HHDRIFT and any benchtop DRIFT at other sites.

36 MATERIALS SCIENCE↗

CONFIDANTE Demonstration Prototype Report

This report summarizes design optimization and performance evaluation studies for a new prototype CONFIDANTE (CONfirmation using a Fast-neutron Imaging Detector with Anti-image Null-positive Time Encoding) warhead confirmation system. It was found that a spherical mask geometry and a 2” diameter cylindrical central detector is expected to best discriminate between the parametrically varied source distributions that were evaluated. The optimized design as fabricated and its performance was evaluated in a series of laboratory measurements. The performance was in good agreement with the design studies, with demonstrated discrimination between objects with differences in scale on the order of 5 centimeters or better at 1 meter stand-off

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Development of Real-Time, In-pile Creep Test Rigs for Characterizing the Structural Materials of Nuclear Components

New and improved materials are being considered for supporting both existing and next-generation nuclear reactors. Reactor materials can significantly degrade with time, thus limiting or altering their properties in harsh reactor environments. To accurately understand such material degradation, real-time data obtained under prototypic irradiation conditions are required. In particular, understanding the creep behavior of materials exposed to irradiation and elevated temperatures is essential for safety concern evaluations. To provide these capabilities, Idaho National Laboratory (INL)’s High Temperature Test Laboratory (HTTL) developed several instrumented test rigs for obtaining real-time data from specimens in well-controlled pressurized-water reactor (PWR) coolant conditions at the Materials Test Reactor. This technical report focuses on INL’s efforts to evaluate and enhance the former creep test rig prototype that relied on linear variable differential transformers in laboratory settings. Specifically, the test rig can detect changes in the length of creep specimens, which is useful for measuring thermal expansion and creep deformation.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Determination of Constraint-Independent Crack Tip Opening Angle for Stable Crack Growth in High-Strength Ductile Steels

The crack tip opening angle (CTOA) is one of fracture toughness parameters that has been used for decades in describing large stable crack growth in thin-walled aerospace structures under the low-constraint conditions. Recently, the pipeline industry has developed a growing interest in using the CTOA parameter to serve as the minimum required fracture toughness to arrest dynamic crack propagation in modern gas transmission pipelines made of high-strength ductile steel. To meet this industrial need, the CTOA test standard ASTM E3039 was therefore developed for measuring the constant critical CTOA. ASTM E3039 recommends a drop weight tearing test (DWTT) specimen with a shallow crack for standard CTOA testing, but its CTOA may depend on the low constraint condition of the DWTT specimen at the crack tip. Verifying the constraint independence of the DWTT-measured CTOA thus becomes indispensable for applying CTOA toughness to the running fracture control in the pipeline design. For this purpose, the present paper evaluates critical CTOA values in a set of fracture toughness tests on single-edge notched bend (SENB) specimens with shallow and deep cracks, based on four CTOA estimation models. Among these, the Ln(P)-LLD linear fit model is similar to that recommended by ASTM E3039 for CTOA calculation. Fracture test data for X80 pipeline steel and HY80 structural steel were considered in the CTOA evaluation. The results showed that the four CTOA models were able to determine a constraint independent CTOA value for stable crack growth in the SENB specimens. As a result, a single, reliable, constant CTOA value could be determined regardless of the specimen geometry or the crack-tip constraint conditions. Therefore, the CTOA measured using ASTM E3039 is constraint-independent and transferable to use in cases of actual cracks propagating in gas transmission pipelines.

36 MATERIALS SCIENCE↗

Findings of the African Combustion Aerosol Collaborative Intercomparison Analysis (ACACIA) Pilot Project to Understand the Optical Properties of Biomass Burning Smoke

Africa is a critical source of biomass burning (BB) aerosols, and its importance is increasing. The African Combustion Aerosol Collaborative Intercomparison Analysis (ACACIA) Pilot Project set to optically characterize BB aerosol generated from sub-Saharan African fuels. We used a photoacoustic spectrometer as a reference instrument to determine the multiple-scattering correction factor C λ for an AE33 aethalometer at three wavelengths, which produced weighted mean values of C 370 =3.69, C 470 =5.65, and C 520 =6.39. C λ increased with wavelength and C 370 was statistically independent of the others, suggesting a single C λ is insufficient, especially in BB scenarios. While a dependence of C λ on burning state was not found, C λ was shown to strongly relate to particle single scattering albedo (SSA, ω). When Cλ was plotted against SSA, values slowly rose at low SSA values, followed by a sharp rise around an SSA of ∼ 0.9; indicating a larger correction needed for less absorbing aerosol. A number of functions operating on either SSA or C λ were explored and the best function was -C λ /(1-C λ )=Aω+B. This is an important parametrization of C λ specifically geared towards BB aerosol from African fuels under different aging states, and is of particular importance for future field work in that continent. An Ångström matrix plot shows that African BB aerosol can have values more akin to dust, which demonstrates that these fuels are distinct in their wavelength dependence from more typical BB aerosol. Lastly, we examined the mass extinction and absorbance cross sections for BB aerosol generated for the same fuels with two different tube furnace setups. Not only is this combustion method flexible, it was found to be reproducible between labs.

47 OTHER INSTRUMENTATION↗

MSD CoP Webinar: Metrics for Human Wellbeing

Context: This webinar was hosted by the MultiSector Dynamics Community of Practice (MSD CoP; https://multisectordynamics.org). Abstract: Human well-being is an inherently multidimensional concept that broadly refers to what constitutes the "good life". Characterizing well-being requires a wide range of measures of quality of life. Taken together, these can provide a description of well-being and better guide decision making. In this webinar, our panel will first summarize the key themes and recommendations of interdisciplinary conversations that occurred during the course of a two-day, in-person workshop convened by PNNL September 27-28, 2023, which laid the foundations for a new research direction of well-being science and application. Next, they will present research exploring several dimensions of human well-being and their links to equity: energy security, food security, and economic measures. Finally, we will introduce the new Equity Working Group, gather community input to inform its activities, and provide avenues for ongoing engagement. Presenters : Stephanie Waldhoff (Joint Global Change Research Institute, Pacific Northwest National Laboratory; Invited Speaker), Brian O'Neill (Joint Global Change Research Institute, Pacific Northwest National Laboratory; Invited Speaker), Rebecca Saari (University of Waterloo; Co-Chair), Amanda Giang (University of British Columbia; Co-Chair), Sarah Fletcher (Stanford University; Co-Chair), and Matt Sparks (University of Waterloo; Communications Officer) Moderator: Pat M. Reed (MSD CoP Facilitation Team) This webinar was held on: May 29, 2024 from 1-2:15 PM ET

Equity↗

Nimbus/TOMS Science Data Operations Support

Projected goals include the following: (1) Participate in and provide analysis of laboratory and in-flight calibration of LTV sensors used for space observations of backscattered LTV radiation; (2) Provide support to the TOMS Science Operations Center, including generating instrument command lists and analysis of TOMS health and safety data; (3) Develop and maintain software and algorithms designed to capture and process raw spacecraft and instrument data, convert the instrument output into measured radiance and irradiances, and produce scientifically valid products; (4) Process the TOMS data into Level 1, Level 2, and Level 3 data products; (5) Provide analysis of the science data products in support of NASA GSFC Code 916's research.

Source record↗

Nimbus/TOMS Science Data Operations Support

1. Participate in and provide analysis of laboratory and in-flight calibration of UV sensors used for space observations of backscattered UV radiation. 2. Provide support to the TOMS Science Operations Center, including generating instrument command lists and analysis of TOMS health and safety data. 3. Develop and maintain software and algorithms designed to capture and process raw spacecraft and instrument data, convert the instrument output into measured radiance and irradiances, and produce scientifically valid products. 4. Process the TOMS data into Level 1, Level 2, and Level 3 data products. 5. Provide analysis of the science data products in support of NASA GSFC Code 916's research.

Childs, Jeff↗

Thermal Emission Spectra of Phobos, Vesta, Ceres, and Pallas: A Comparison

Ultraviolet, visual, and near-infrared spectra of Phobos, obtained by Mariner 9 and Viking Orbiters, were interpreted to suggest a compositional similarity with carbonaceous chrondrites. Such a composition would be inconsistent with the moon's origin in the proto-Mars region, as Mars is composed chiefly of differentiated silicates. This interpretation was used to suggest that the moons originated in the main-asteroid belt, with subsequent capture and orbital evolution into their current locations. Interpretations of more recent visual and near-infrared spectra, obtained by Phobos-2 and Mars Pathfinder, have demonstrated that the Phobos spectrum is more similar to spectra of other classes of asteroids and lunar soils. If lunar mare soil is the correct analogy, then such a composition suggests a formation of Phobos from materials similar to that on Mars, i.e. basalts, and would not require a dynamically difficult capture and orbital evolution. During the science phasing orbits of the Mars Global Surveyor mission Thermal Emission Spectrometer (TES) observations of Phobos were acquired at each of four encounters. The spectral variability observed for localized surface regions on Phobos has been previously reported and is greatest near the northern wall of Stickney crater. Interpretation of the thermal infrared spectra of airless bodies, based upon most existing laboratory measurements, is complicated by the absence of interstitial gases on the celestial objects that would act to minimize potential thermal gradients in the upper layers of the surface. As an aid to interpretation of the TES Phobos spectra are compared to telescopic and airborne thermal infrared spectra of asteroids from several classes, including Ceres (G), Pallas (B), and Vesta (V). The asteroid spectra provide a direct analogy to the physical situation encountered at the surface of Phobos, albeit different thermal gradients may exist for each surface. This work is supported by NASA RTOP's 344-30-30-01 and 344-34-21-08.

Roush, Ted↗

Measurements of Oxychlorine species on Mars

Mars landed and orbiter missions have instrumentation capable of detecting oxychlorine phases (e.g. perchlorate, chlorate) on the surface. Perchlorate (~0.6 wt%) was first detected by the Wet Chemistry Laboratory in the surface material at the Phoenix Mars Landing site. Subsequent analyses by the Thermal Evolved Gas Analyser aboard the same lander detected an oxygen release (~465°C) consistent with the thermal decomposition of perchlorate. Recent thermal analysis by the Mars Science Laboratory’s Sample Analysis at Mars instrument has also indicated the presence of oxychlorine phases (up to 1.2 wt%) in Gale Crater materials. Despite being at detectable concentrations, the Chemistry and Mineralogy (CheMin) X-ray diffractometer has not detected oxychlorine phases. This suggests that Gale Crater oxychlorine may exist as poorly crystalline phases or that perchlorate/chlorate mixtures exist, so that individual oxychlorine concentrations are below CheMin detection limits (~1 wt%). Although not initially designed to detect oxychlorine phases, reinterpretation of Viking Gas Chromatography/Mass Spectrometer data also suggest that oxychlorine phases are present in the Viking surface materials. Remote near-infrared spectral analyses by the Compact Reconnaissance Imaging Spectrometer for Mars (CRISM) instrument indicate that at least some martian recurring slope lineae (RSL) have spectral signatures consistent with the presence of hydrated perchlorates or chlorates during the seasons when RSL are most extensive. Despite the thermal emission spectrometer, Thermal Emission Imaging System, Observatoire pour la Minéralogie, l’Eau, les Glaces et l’Activité and CRISM detection of hundreds of anhydrous chloride (~10–25 vol%) deposits, expected associated oxychlorine phases (>5–10 vol%) have not been detected. Total Cl and oxychlorine data sets from the Phoenix Lander and the Mars Science Laboratory missions could be used to develop oxychlorine versus total Cl correlations, which may constrain oxychlorine concentrations at other locations on Mars by using total Cl determined by other missions (e.g. Viking, Pathfinder, MER and Odyssey). Development of microfluidic or ‘lab-on-a-chip’ instrumentation has the potential to be the next generation analytical capability used to identify and quantify individual oxychlorine species on future landed robotic missions to Mars.

Perchlorate↗

Second Time-Resolved Observations of Precipitation Structure and Storm Intensity With a Constellation of Smallsats (TROPICS) Mission Applications Workshop

The NASA Time-Resolved Observations of Precipitation structure and storm Intensity with a Constellation of Smallsats (TROPICS) mission is a constellation of state-of-the-science observing platforms that will measure temperature and humidity soundings and precipitation with spatial resolution comparable to current operational passive microwave (PMW) sounders but with unprecedented temporal resolution (Mission Website).1 TROPICS is a cost-capped ($30.2 million), Venture-class mission funded by the NASA Earth Science Division (ESD) and led by Principal Investigator Dr. William Blackwell from the Massachusetts Institute of Technology Lincoln Laboratory (MIT LL). The mission consists of a constellation of six, three-unit (3U) CubeSats (approximately 10×10×34 cm), each hosting a 12-channel PMW spectrometer based on the Micro-sized Microwave Atmospheric Satellite-2 (MicroMAS-2) developed at MIT LL, but with a substantially improved design. TROPICS will provide imagery near 91 and 205 GHz, temperature sounding near 118 GHz, and moisture sounding near 183 GHz. Spatial resolution at nadir will be around 27 km for temperature and 17 km for moisture and precipitation with a swath width of approximately 2,000 km from a 550-km orbit altitude. Both the spatial resolution and swath width are similar to the Advanced Technology Microwave Sounder (ATMS) that is being flown as part of the Suomi National Polar-orbiting Partnership (SNPP) and National Oceanic and Atmospheric Administration (NOAA) Joint Polar Satellite System (JPSS). In addition, TROPICS meets many of the requirements outlined in the 2007 Decadal Survey for the Precision and All-Weather Tempera-ture and Humidity (PATH) mission, which was originally envisioned as a microwave instrument in geostationary orbit. TROPICS enables temporal resolution approaching that of geostationary orbit but at a much lower cost, demonstrating a technology that could impact the design of future Earth-observing missions. The satellites for the TROPICS mission were delivered to NASA in 2019 for launches planned in the 2021–2022 timeframe. The primary mission objective of TROPICS is to relate temperature, humidity, and precipitation structure to the evolution of tropical cyclone (TC) intensity.

remote sensing↗

Application of Atmospheric Gases and Particulate Matter to the Assessment of Urban Heat Island

Background: Urban heat island (UHI), where built areas are warmer compared to non-urban regions, increases human related diseases and mortality. A key challenge in UHI analysis is the designation of sites as urban or suburban/rural; however, the growing complexity of green spaces in urban areas and the predominance of the transportation sector in nonurban areas creates a dilemma for distinct delineation. Objectives: This study aims to utilize the variability of atmospheric components such as particulate matter (PM), inorganic gases, and volatile organic compounds (VOCs) as direct tracers of the degree of urbanization for ground-based measurements to fully comprehend UHI in convoluted regions with indistinct delineation of urban and nonurban environments. Methods: Atmospheric gases and aerosols were used as direct tracers of urbanization for UHI analysis. Inorganic gases and particulate matter were monitored in two sites in a southeastern US city with varying degrees of urbanization. VOCs were analyzed using a proton transfer reaction time-of-flight mass spectrometer. Results: The more-urbanized site exhibited warmer night conditions and elevated total oxidant levels, leading to the formation of nanometer-sized particles. Machine learning analysis revealed similar atmospheric pollutant profiles for both sites, suggesting comparable sources and variability. Biogenic VOCs were enhanced at the less-urbanized site; however, levels of anthropogenic aromatic VOCs were comparable for both sites. A comprehensive mass spectra analysis revealed distinct molecular backbones per site that further affirmed the applicability of VOCs as indicators of urbanization. Conclusion: This study concludes that VOCs provide more direct and accurate information than typical inorganic gases and PM parameters for characterizing the degree of urbanization. Further exploration of VOCs can enhance our understanding of UHI dynamics and its interaction with vegetation in urban green spaces.

Air quality sensor↗

An in situ shearing x-ray measurement system for exploring structures and dynamics at the solid–liquid interface

Revealing interfacial structure and dynamics has been one of the essential thematic topics in material science and condensed matter physics. Synchrotron-based x-ray scattering techniques can deliver unique and insightful probing of interfacial structures and dynamics, in particular, in reflection geometries with higher surface and interfacial sensitivity than transmission geometries. We demonstrate the design and implementation of an in situ shearing x-ray measurement system, equipped with both inline parallel-plate and cone-and-plate shearing setups and operated at the advanced photon source at Argonne National Laboratory, to investigate the structures and dynamics of end-tethered polymers at the solid-liquid interface. With a precise lifting motor, a micrometer-scale gap can be produced by aligning two surfaces of a rotating upper shaft and a lower sample substrate. A torsional shear flow forms in the gap and applies tangential shear forces on the sample surface. The technical combination with nanoscale rheology and the utilization of in situ x-ray scattering allow us to gain fundamental insights into the complex dynamics in soft interfaces under shearing. In this work, we demonstrate the technical scope and experimental capability of the in situ shearing x-ray system through the measurements of charged polymers at both flat and curved interfaces upon shearing. Furthermore, through the in situ shearing x-ray scattering experiments integrated with theoretical simulations, we aim to develop a detailed understanding of the short-range molecular structure and mesoscale ionic aggregate morphology, as well as ion transport and dynamics in soft interfaces, thereby providing fundamental insight into a long-standing challenge in ionic polymer brushes with a significant technological impact.

36 MATERIALS SCIENCE↗

WHONDRS Surface Water Dissolved Organic Carbon and FTICR-MS across Glacial Features in Svalbard 2022

This dataset supports a broader study examining climatic forcing of terrestrial greenhouse gas emission through permafrost and glaciers in Svalbard. The dataset provides geochemistry and organic matter characterization data generated from surface water collected from 11 sites across central Svalbard. Data were also collected in 2021 and can be found at https://data.ess-dive.lbl.gov/view/doi:10.15485/1888571. Additional related data were collected and will be published separately in collaboration with Yde and Kleber.This dataset is comprised of one main data folder containing (1) file-level metadata; (2) data dictionary; (3) field metadata; (4) dissolved organic carbon (DOC; measured as non-purgeable organic carbon; NPOC); (5) surface water sampling protocol; (6) readme; (7) methods codes; (8) international geo-sample number (IGSN) mapping file; (9) a folder of field photos; and (10) folder of high resolution characterization of organic matter via 7 Tesla Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) generated through the Environmental Molecular Sciences Laboratory (EMSL; https://www.pnnl.gov/environmental-molecular-sciences-laboratory). The FTICR folder contains two subfolders, one containing the .xml data files and the other containing instructions for using Formularity (https://omics.pnl.gov/software/formularity) and an R script to process the data based on the user's specific needs. All files are .csv, .pdf, .R, .ref, or .xml.

54 ENVIRONMENTAL SCIENCES↗