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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 703 records · Page 39
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Phage display and other peptide display technologies

ABSTRACT Phage display technology, which is based on the presentation of peptide sequences on the surface of bacteriophage virions, was developed over 30 years ago. Improvements in phage display systems have allowed us to employ this method in numerous fields of biotechnology, as diverse as immunological and biomedical applications, the formation of novel materials and many others. The importance of phage display platforms was recognized by awarding the Nobel Prize in 2018 ‘for the phage display of peptides and antibodies’. In contrast to many review articles concerning specific applications of phage display systems published in recent years, we present an overview of this technology, including a comparison of various display systems, their advantages and disadvantages, and examples of applications in various fields of science, medicine and the broad sense of biotechnology. Other peptide display technologies, which employ bacterial, yeast and mammalian cells, as well as eukaryotic viruses and cell-free systems, are also discussed. These powerful methods are still being developed and improved; thus, novel sophisticated tools based on phage display and other peptide display systems are constantly emerging, and new opportunities to solve various scientific, medical and technological problems can be expected to become available in the near future.

Jaroszewicz, Weronika (ORCID:0000000302948682)↗
DOE OSTI2024

Dynamic nitrogen fixation in an aerobic endophyte of Populus

Biological nitrogen fixation by microbial diazotrophs can contribute significantly to nitrogen availability in non-nodulating plant species. In this study of molecular mechanisms and gene expression relating to biological nitrogen fixation, the aerobic nitrogen-fixing endophyte Burkholderia vietnamiensis, strain WPB, isolated from Populus trichocarpa served as a model for endophyte–poplar interactions. Nitrogen-fixing activity was observed to be dynamic on nitrogen-free medium with a subset of colonies growing to form robust, raised globular like structures. Secondary ion mass spectrometry (NanoSIMS) confirmed that N-fixation was uneven within the population. A fluorescent transcriptional reporter (GFP) revealed that the nitrogenase subunit nifH is not uniformly expressed across genetically identical colonies of WPB and that only ~11% of the population was actively expressing the nifH gene. Higher nifH gene expression was observed in clustered cells through monitoring individual bacterial cells using single-molecule fluorescence in situ hybridization. Through 15 N 2 enrichment, we identified key nitrogenous metabolites and proteins synthesized by WPB and employed targeted metabolomics in active and inactive populations. We cocultivated WPB Pnif-GFP with poplar within a RhizoChip, a synthetic soil habitat, which enabled direct imaging of microbial nifH expression within root epidermal cells. We observed that nifH expression is localized to the root elongation zone where the strain forms a unique physical interaction with the root cells. This work employed comprehensive experimentation to identify novel mechanisms regulating both biological nitrogen fixation and beneficial plant–endophyte interactions.

15 N-tracking metabolomics↗
DOE OSTI2021

Differential response of the photosynthetic machinery to dehydration in older and younger resurrection plants

Abstract A group of vascular plants called homoiochlorophyllous resurrection plants evolved unique capabilities to protect their photosynthetic machinery against desiccation-induced damage. This study examined whether the ontogenetic status of the resurrection plant Craterostigma pumilum has an impact on how the plant responds to dehydration at the thylakoid membrane level to prepare cells for the desiccated state. Thus, younger plants (<4 months) were compared with their older (>6 months) counterparts. Ultrastructural analysis provided evidence that younger plants suppressed senescence-like programs that are realized in older plants. During dehydration, older plants degrade specific subunits of the photosynthetic apparatus such as the D1 subunit of PSII and subunits of the cytochrome b6f complex. The latter leads to a controlled down-regulation of linear electron transport. In contrast, younger plants increased photoprotective high-energy quenching mechanisms and maintained a high capability to replace damaged D1 subunits. It follows that depending on the ontogenetic state, either more degradation-based or more photoprotective mechanisms are employed during dehydration of Craterostigma pumilum.

Plant Sciences↗
DOE OSTI2025

Revealing Phase Heterogeneity in Vertically Aligned Nanocomposites via Plan-View Electron Energy Loss Spectroscopy

Hydrogen utilization in clean energy technologies is challenged by limited storage and transport within materials, owing to the complex hydrogen kinetics at interfaces [1]. Understanding these interfacial mechanisms at the nanoscale is crucial for developing improved materials for hydrogen applications, particularly proton-conducting fuel cells (PCFCs). Vertically aligned nanocomposites (VANs) grown by pulsed laser deposition (PLD) offer a unique platform for investigating the interfacial effects on hydrogen transport due to their well-defined interfaces parallel to the direction of charge transport [2-4]. To investigate hydrogen transport, the two phases within the VANs were chosen as BaZr 0.9 Y 0.1 O 3-x (BZY), a known proton conductor, and Pr 0.1 Ce 0.9 O 2-x (PCO), a mixed ionic-electronic conductor [5]. This PCO-BZY VANs architecture allows the investigation of how the interface between a proton conductor and a mixed conductor influences hydrogen transport. However, because of the small size of hydrogen, it is difficult to discern the nature of its interactions with interfaces from bulk measurements at the macroscale, thus necessitating nanoscale measurements [6]. Electron energy loss spectroscopy (EELS) allows for nanometer-resolution probing of the local atomic structure and chemistry at the BZY/PCO interface. In this study, plan-view analysis of PCO-BZY VANs films was employed to characterize the structure and phase distribution of the VANs and investigate the interface between the nanostructures. The films were imaged using scanning electron microscopy (SEM) in the Hitachi S-4800 SEM, collecting secondary electron images using mixed upper and lower detectors. Then, plan-view transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) EELS were employed using a JEOL ARM300 microscope operated at 300kV with a Gatan K3 GIF Continuum detector to study the distribution of the BZY and PCO phases through the film. As a result, spectrum images were acquired at a dispersion of 0.18eV per channel and denoised afterward by principal component analysis (PCA) method.

Griffin, Elizabeth [Northwestern University, Evans↗
DOE OSTI2021

The COMBS Survey - II. Distinguishing the metal-poor bulge from the halo interlopers

The metal-poor stars in the bulge are important relics of the Milky Way’s formation history, as simulations predict that they are some of the oldest stars in the Galaxy. In order to determine if they are truly ancient stars, we must understand their origins. Currently, it is unclear if the metal-poor stars in the bulge ([Fe/H] < -1 dex) are merely halo interlopers, a unique accreted population, part of the boxy/peanut-shaped bulge, or a classical bulge population. In this work, we use spectra from the VLT/FLAMES spectrograph to obtain metallicity estimates using the Ca-II triplet of 473 bulge stars (187 of which have [Fe/H] < -1 dex), targeted using SkyMapper photometry. We also use Gaia DR2 data to infer the Galactic positions and velocities along with orbital properties for 523 stars. We employ a probabilistic orbit analysis and find that about half of our sample has a >50 percent probability of being bound to the bulge, and half are halo interlopers. We also see that the occurrence rate of halo interlopers increases steadily with decreasing metallicity across the full range of our sample (-3 < [Fe/H] < 0.5). Our examination of the kinematics of the confined compared to the unbound stars indicates the metal-poor bulge comprises at least two populations; those confined to the boxy/peanut bulge and halo stars passing through the inner galaxy. We conclude that an orbital analysis approach, as we have employed, is important to understand the composite nature of the metal-poor stars in the inner region.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

DeepMerge – II. Building robust deep learning algorithms for merging galaxy identification across domains

In astronomy, neural networks are often trained on simulation data with the prospect of being used on telescope observations. Unfortunately, training a model on simulation data and then applying it to instrument data leads to a substantial and potentially even detrimental decrease in model accuracy on the new target dataset. Simulated and instrument data represent different data domains, and for an algorithm to work in both, domain-invariant learning is necessary. Here we employ domain adaptation techniques— Maximum Mean Discrepancy (MMD) as an additional transfer loss and Domain Adversarial Neural Networks (DANNs)— and demonstrate their viability to extract domain-invariant features within the astronomical context of classifying merging and non-merging galaxies. Additionally, we explore the use of Fisher loss and entropy minimization to enforce better in-domain class discriminability. We show that the addition of each domain adaptation technique improves the performance of a classifier when compared to conventional deep learning algorithms. We demonstrate this on two examples: between two Illustris-1 simulated datasets of distant merging galaxies, and between Illustris-1 simulated data of nearby merging galaxies and observed data from the Sloan Digital Sky Survey. The use of domain adaptation techniques in our experiments leads to an increase of target domain classification accuracy of up to ~20%. With further development, these techniques will allow astronomers to successfully implement neural network models trained on simulation data to efficiently detect and study astrophysical objects in current and future large-scale astronomical surveys.

galaxies: interactions↗
DOE OSTI2022

Cosmological Constraints from Gas Mass Fractions of Massive, Relaxed Galaxy Clusters

We present updated cosmological constraints from measurements of the gas mass fractions (f(gas)) of massive, dynamically relaxed galaxy clusters. Our new data set has greater leverage on models of dark energy, thanks to the addition of the Perseus cluster at low redshifts, two new clusters at redshifts z greater than or similar to 1, and significantly longer observations of four clusters at 0.6 < z < 0.9. Our low-redshift (z < 0.16) f(gas) data, combined with the cosmic baryon fraction measured from the cosmic microwave background (CMB), imply a Hubble constant of h = 0.722 +/- 0.067. Combining the full f(gas) data set with priors on the cosmic baryon density and the Hubble constant, we constrain the dark energy density to be Omega(Lambda) = 0.865 +/- 0.119 in non-flat Lambda cold dark matter (cosmological constant) models, and its equation of state to be in flat, constant-w models, respectively 41percent and 29percent tighter than our previous work, and comparable to the best constraints available from other probes. Combining f(gas), CMB, supernova, and baryon acoustic oscillation data, we also constrain models with global curvature and evolving dark energy. For the massive, relaxed clusters employed here, we find the scaling of f(gas) with mass to be consistent with a constant, with an intrinsic scatter that corresponds to just similar to 3percent in distance.

clusters: general – X-rays:↗
DOE OSTI2022

The MaNGA firefly Value-Added-Catalogue: resolved stellar populations of 10,010 nearby galaxies

We present the Mapping Nearby Galaxies at Apache Point Observatory survey (MaNGA) FIREFLY Value Added Catalogue (VAC) – a catalogue of ~3.7 million spatially resolved stellar population properties across 10 010 nearby galaxies from the final data release of the MaNGA survey. The full spectral fitting code FIREFLY is employed to derive parameters such as stellar ages, metallicities, stellar and remnant masses, star formation histories, star formation rates, and dust attenuation. In addition to Voronoi-binned measurements, our VAC also provides global properties, such as central values and radial gradients. Two variants of the VAC are available: presenting the results from fits using the M11-MILES and the novel MaStar stellar population models. MaStar allows to constrain the fit over the whole MaNGA wavelength range, extends the age-metallicity parameter space, and uses empirical spectra from the same instrument as MaNGA. The fits employing MaStar models find, on average, slightly younger ages, higher mass-weighted metallicities, and smaller colour excesses. These differences are reduced when matching the wavelength range and converging template grids. We further report that FIREFLY stellar masses are systematically lower by ~0.3 dex than masses from the MaNGA PCA and Pipe3D VACs, but match masses from the NSA best with only ~0.1-dex difference. Finally, we show that FIREFLY stellar ages correlate with spectral index age indicators H δ A and D n (4000), though with a clear additional metallicity dependence.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

The essential character of the neutrino mechanism of core-collapse supernova explosions

Abstract Calibrating with detailed 2D core-collapse supernova (CCSN) simulations, we derive a simple CCSN explosion condition based solely upon the terminal density profiles of state-of-the-art stellar evolution calculations of the progenitor massive stars. This condition captures the vast majority of the behaviour of the one hundred 2D state-of-the-art models we performed to gauge its usefulness. The goal is to predict, without resort to detailed simulation, the explodability of a given massive star. We find that the simple maximum fractional ram pressure jump discriminant we define works well ∼90 per cent of the time and we speculate on the origin of the few false positives and false negatives we witness. The maximum ram pressure jump generally occurs at the time of accretion of the silicon/oxygen interface, but not always. Our results depend upon the fidelity with which the current implementation of our code F ornax adheres to Nature and issues concerning the neutrino–matter interaction, the nuclear equation of state, the possible effects of neutrino oscillations, grid resolution, the possible role of rotation and magnetic fields, and the accuracy of the numerical algorithms employed remain to be resolved. Nevertheless, the explodability condition we obtain is simple to implement, shows promise that it might be further generalized while still employing data from only the unstable Chandrasekhar progenitors, and is a more credible and robust simple explosion predictor than can currently be found in the literature.

Astronomy & Astrophysics↗
DOE OSTI2023

General relativistic pulsations of ultra-massive ZZ Ceti stars

ABSTRACT Ultra-massive white dwarf stars are currently being discovered at a considerable rate, thanks to surveys such as the Gaia space mission. These dense and compact stellar remnants likely play a major role in Type Ia supernova explosions. It is possible to probe the interiors of ultra-massive white dwarfs through asteroseismology. In the case of the most massive white dwarfs, general relativity could affect their structure and pulsations substantially. In this work, we present results of relativistic pulsation calculations employing relativistic ultra-massive ONe-core white dwarf models with hydrogen-rich atmospheres and masses ranging from 1.29 to $1.369 \ \mathrm{M}_{\odot }$ with the aim of assessing the impact of general relativity on the adiabatic gravity (g)-mode period spectrum of very high mass ZZ Ceti stars. Employing the relativistic Cowling approximation for the pulsation analysis, we find that the critical buoyancy (Brunt–Väisälä) and acoustic (Lamb) frequencies are larger for the relativistic case, compared to the Newtonian case, due to the relativistic white dwarf models having smaller radii and higher gravities for a fixed stellar mass. In addition, the g-mode periods are shorter in the relativistic case than those in the Newtonian computations, with relative differences of up to ∼$50$ per cent for the highest mass models ($1.369 \ \mathrm{M}_{\odot }$) and for effective temperatures typical of the ZZ Ceti instability strip. Hence, the effects of general relativity on the structure, evolution, and pulsations of white dwarfs with masses larger than ∼$1.29 \ \mathrm{M}_{\odot }$ cannot be ignored in the asteroseismological analysis of ultra-massive ZZ Ceti stars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2024

How negative feedback and the ambient environment limit the influence of recombination in common envelope evolution

ABSTRACT We perform 3D hydrodynamical simulations to study recombination and ionization during the common envelope (CE) phase of binary evolution, and develop techniques to track the ionic transitions in time and space. We simulate the interaction of a $2\, \mathrm{M_\odot }$ red giant branch primary and a $1\, \mathrm{M_\odot }$ companion modelled as a particle. We compare a run employing a tabulated equation of state (EOS) that accounts for ionization and recombination, with a run employing an ideal gas EOS. During the first half of the simulations, ∼15 per cent more mass is unbound in the tabulated EOS run due to the release of recombination energy, but by simulation end the difference has become negligible. We explain this as being a consequence of (i) the tabulated EOS run experiences a shallower inspiral and hence smaller orbital energy release at late times because recombination energy release expands the envelope and reduces drag, and (ii) collision and mixing between expanding envelope gas, ejecta and circumstellar ambient gas assists in unbinding the envelope, but does so less efficiently in the tabulated EOS run where some of the energy transferred to bound envelope gas is used for ionization. The rate of mass unbinding is approximately constant in the last half of the simulations and the orbital separation steadily decreases at late times. A simple linear extrapolation predicts a CE phase duration of ${\sim}2\, {\rm yr}$, after which the envelope would be unbound.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Subaru Hyper Suprime-Cam revisits the large-scale environmental dependence on galaxy morphology over 360 deg2 at z = 0.3–0.6

This study investigates the role of large-scale environments on the fraction of spiral galaxies at z = 0.3–0.6 sliced to three redshift bins of Δz = 0.1. Here, we sample 276220 massive galaxies in a limited stellar mass of 5 × 1010 solar mass (~M*) over 360 deg2, as obtained from the Second Public Data Release of the Hyper Suprime-Cam Subaru Strategic Program (HSC-SSP). By combining projected two-dimensional density information (Shimakawa et al. 2021, MNRAS, 503, 3896) and the CAMIRA cluster catalog (Oguri et al. 2018, PASJ, 70, S20), we investigate the spiral fraction across large-scale overdensities and in the vicinity of red sequence clusters. We adopt transfer learning to reduce the cost of labeling spiral galaxies significantly and then perform stacking analysis across the entire field to overcome the limitations of sample size. Here we employ a morphological classification catalog by the Galaxy Zoo Hubble (Willett et al., 2017, MNRAS, 464, 4176) to train the deep learning model. Based on 74103 sources classified as spirals, we find moderate morphology–density relations on a 10 comoving Mpc scale, thanks to the wide-field coverage of HSC-SSP. Clear deficits of spiral galaxies have also been confirmed, in and around 1136 red sequence clusters. Furthermore, we verify whether there is a large-scale environmental dependence on rest-frame u - r colors of spiral galaxies; such a tendency was not observed in our sample.

Astronomy & Astrophysics↗
DOE OSTI2023

Daylength variation affects growth, photosynthesis, leaf metabolism, partitioning, and metabolic fluxes

Abstract Daylength, a seasonal and latitudinal variable, exerts a substantial impact on plant growth. However, the relationship between daylength and growth is nonproportional, suggesting the existence of adaptive mechanisms. Thus, our study aimed to comprehensively investigate the adaptive strategies employed by plants in response to daylength variation. We grew false flax (Camelina sativa) plants, a model oilseed crop, under long-day (LD) and short-day (SD) conditions and used growth measurements, gas exchange measurements, and isotopic labeling techniques, including 13C, 14C, and 2H2O, to determine responses to different daylengths. Our findings revealed that daylength influences various growth parameters, photosynthetic physiology, carbon partitioning, metabolic fluxes, and metabolite levels. SD plants employed diverse mechanisms to compensate for reduced CO2 fixation in the shorter photoperiod. These mechanisms included enhanced photosynthetic rates and reduced respiration in the light (RL), leading to increased shoot investment. Additionally, SD plants exhibited reduced rates of the glucose 6-phosphate (G6P) shunt and greater partitioning of sugars into starch, thereby sustaining carbon availability during the longer night. Isotopic labeling results further demonstrated substantial alterations in the partitioning of amino acids and TCA cycle intermediates between rapidly and slowly turning over pools. Overall, the results point to multiple developmental, physiological, and metabolic ways in which plants adapt to different daylengths to maintain growth.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Engineering sensitivity and specificity of AraC-based biosensors responsive to triacetic acid lactone and orsellinic acid

Abstract We previously described the design of triacetic acid lactone (TAL) biosensor ‘AraC-TAL1’, based on the AraC regulatory protein. Although useful as a tool to screen for enhanced TAL biosynthesis, this variant shows elevated background (leaky) expression, poor sensitivity and relaxed inducer specificity, including responsiveness to orsellinic acid (OA). More sensitive biosensors specific to either TAL or OA can aid in the study and engineering of polyketide synthases that produce these and similar compounds. In this work, we employed a TetA-based dual-selection to isolate new TAL-responsive AraC variants showing reduced background expression and improved TAL sensitivity. To improve TAL specificity, OA was included as a ‘decoy’ ligand during negative selection, resulting in the isolation of a TAL biosensor that is inhibited by OA. Finally, to engineer OA-specific AraC variants, the iterative protein redesign and optimization computational framework was employed, followed by 2 rounds of directed evolution, resulting in a biosensor with 24-fold improved OA/TAL specificity, relative to AraC-TAL1.

Wang, Zhiqing↗
DOE OSTI2024

On the nature of apparent transient sources on the National Geographic Society–Palomar Observatory Sky Survey glass copy plates

Abstract We examine critically recent claims for the presence of above-atmosphere optical transients in publicly available digitized scans of Schmidt telescope photographic plate material derived from the National Geographic Society–Palomar Observatory Sky Survey. We employ the publicly available SuperCOSMOS Sky Survey catalogues to examine statistically the morphology of the sources. We develop a simple, objective, and automated image classification scheme based on a random forest decision tree classifier. We find that the putative transients are likely to be spurious artefacts of the photographic emulsion. We suggest a possible cause of the appearance of these images as resulting from the copying procedure employed to disseminate glass copy survey atlas sets in the era before large-scale digitization programmes.

Hambly, N. C. (ORCID:0000000299019064)↗
DOE OSTI2021

The “Brookhaven Brassie” and the Response to the Three Mile Island Accident

In the mid-1970s, American civil defense authorities became increasingly concerned with the potential threat of fission reactor accidents. Research from the Defense Civil Preparedness Agency began to be aimed not just at the ever-present threat of nuclear warfare, but also peacetime emergencies as part of a "dual use" philosophy. The Brookhaven National Laboratory received funding to create a prototype radioiodine air sampling system, with multiple publications detailing the creation of the air sampler itself and a special CD V-700 survey meter that accompanied it. In late March 1979, the system found its first operational employment at the reactor accident at Three Mile Island, Pennsylvania. Despite successful use and further study, the BNL Air Sampler was not widely fielded by the federal government. However, lessons learned from its employment and development may be applicable to contemporary radiological emergency response.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
DOE OSTI2026

Semiclassical treatment of bottomonium suppression and regeneration in 𝑝 + Pb collisions

Here, we study bottomonium suppression in 𝑝 + Pb relative to 𝑝 + 𝑝 collisions at center-of-mass energies of $\sqrt{s_{NN}}$ = 5.02 and 8.16 TeV. Specifically, we combine cold nuclear matter effects (nuclear modifications of the parton densities, energy loss, and momentum broadening) with those from hot nuclear matter (suppression and regeneration) by implementing the formation of a quark-gluon plasma in hydrodynamic simulations. Bottomonium transport in the quark-gluon plasma is evaluated semiclassically, employing two different reaction rates. The first includes quasifree inelastic scattering and gluodissociation employing a perturbative coupling to the medium. The second is based on in-medium 𝑇-matrix calculations where the input potential is constrained by lattice quantum chromodynamics to extract the bottomonium masses and dissociation rates. These semiclassical results are compared to previous calculations in an open quantum system approach and to the experimental data. Predictions for 𝜒 𝑏 suppression at $\sqrt{s_{NN}}$ = 8.16 TeV are also presented.

Physics - Physics of elementary particles and fiel↗
DOE OSTI2026

Cosmic axions revealed via amplified modulation of the ellipticity of a laser

We propose a new axion dark matter detection strategy that employs optical readout of laser beam ellipticity modulations caused by axion-induced electric fields in a microwave cavity, using electro-optic (EO) crystals, enhanced by externally injected radio-frequency (rf) power. Building upon the variance-based probing method [Phys. Rev. D 107, 103005 (2023).], we extend this concept to the optical domain: A weak probe laser interacts with an EO crystal coupled to the resonant microwave cavity field at cryogenic temperatures, and the axion-induced electric field is revealed through induced ellipticity. The injected rf signal coherently interferes with that of the axion field, amplifying the optical response and significantly improving sensitivity. While our EO-based method employs a Fabry-Pérot resonator, we do not require Michelson interferometers. Our method, hence, enables compact, high-frequency axion searches, across the 0.5–50 GHz range. Operating at cryogenic temperatures not only suppresses thermal backgrounds, but, critically, allows the probing method to mitigate the quantum noise. This approach offers a scalable path forward for axion detection over the ∼(few−200) μ⁢eV mass range—covering the preferred parameter space for the postinflationary Peccei-Quinn axion dark matter—using compact, tunable systems.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗