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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 703 records · Page 39
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos

The combination of 13C-isotopic labeling and mass spectrometry imaging (MSI) offers an approach to analyze metabolic flux in situ. However, combining isotopic labeling and MSI presents technical challenges ranging from sample preparation, label incorporation, data collection, and analysis. Isotopic labeling and MSI individually create large, complex data sets, and this is compounded when both methods are combined. Therefore, analyzing isotopically labeled MSI data requires streamlined procedures to support biologically meaningful interpretations. Using currently available software and techniques, here we describe a workflow to analyze 13C-labeled isotopologues of the membrane lipid and storage oil lipid intermediate―phosphatidylcholine (PC). Our results with embryos of the oilseed crops, Camelina sativa and Thlaspi arvense (pennycress), demonstrated greater 13C-isotopic labeling in the cotyledons of developing embryos compared with the embryonic axis. Greater isotopic enrichment in PC molecular species with more saturated and longer chain fatty acids suggest different flux patterns related to fatty acid desaturation and elongation pathways. The ability to evaluate MSI data of isotopically labeled plant embryos will facilitate the potential to investigate spatial aspects of metabolic flux in situ.

metabolomics↗
DOE OSTI2023

Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa

Plant phenotyping is typically a time-consuming and expensive endeavor, requiring large groups of researchers to meticulously measure biologically relevant plant traits, and is the main bottleneck in understanding plant adaptation and the genetic architecture underlying complex traits at population scale. In this work, we address these challenges by leveraging few-shot learning with convolutional neural networks to segment the leaf body and visible venation of 2,906 Populus trichocarpa leaf images obtained in the field. In contrast to previous methods, our approach (a) does not require experimental or image preprocessing, (b) uses the raw RGB images at full resolution, and (c) requires very few samples for training (e.g., just 8 images for vein segmentation). Traits relating to leaf morphology and vein topology are extracted from the resulting segmentations using traditional open-source image-processing tools, validated using real-world physical measurements, and used to conduct a genome-wide association study to identify genes controlling the traits. In this way, the current work is designed to provide the plant phenotyping community with (a) methods for fast and accurate image-based feature extraction that require minimal training data and (b) a new population-scale dataset, including 68 different leaf phenotypes, for domain scientists and machine learning researchers. All of the few-shot learning code, data, and results are made publicly available.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Cold dark matter substructures in early-type galaxy halos

We present initial results from the “Ponos” zoom-in numerical simulations of dark matter substructures in massive ellipticals. Two very highly resolved dark matter halos with M {sub vir} = 1.2 × 10{sup 13} M{sub ⊙} and M {sub vir} = 6.5 × 10{sup 12} M{sub ⊙} and different (“violent” versus “quiescent”) assembly histories have been simulated down to z = 0 in a ΛCDM cosmology with a total of 921,651,914 and 408,377,544 particles, respectively. Within the virial radius, the total mass fraction in self-bound M {sub sub} > 10{sup 6} M{sub ⊙} subhalos at the present epoch is 15% for the violent host and 16.5% for the quiescent one. At z = 0.7, these fractions increase to 19% and 33%, respectively, as more recently accreted satellites are less prone to tidal destruction. In projection, the average fraction of surface mass density in substructure at a distance of R/R {sub vir} = 0.02 (∼5–10 kpc) from the two halo centers ranges from 0.6% to ≳2%, significantly higher than that measured in simulations of Milky Way-sized halos. The contribution of subhalos with M {sub sub} < 10{sup 9} M{sub ⊙} to the projected mass fraction is between one-fifth and one-third of the total, with the smallest share found in the quiescent host. We assess the impact of baryonic effects via twin, lower-resolution hydrodynamical simulations that include metallicity-dependent gas cooling, star formation, and a delayed-radiative-cooling scheme for supernova feedback. Baryonic contraction produces a super-isothermal total density profile and increases the number of massive subhalos in the inner regions of the main host. The host density profiles and projected subhalo mass fractions appear to be broadly consistent with observations of gravitational lenses.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

ALMA Observations of Asymmetric Molecular Gas Emission from a Protoplanetary Disk in the Orion Nebula

We present Atacama Large Millimeter/submillimeter Array (ALMA) observations of molecular line emission from d216-0939, one of the largest and most massive protoplanetary disks in the Orion Nebula Cluster. We model the spectrally resolved HCO{sup +} (4–3), CO (3–2), and HCN (4–3) lines observed at 0.&prime;5 resolution to fit the temperature and density structure of the disk. We also weakly detect and spectrally resolve the CS (7–6) line but do not model it. The abundances we derive for CO and HCO{sup +} are generally consistent with expected values from chemical modeling of protoplanetary disks, while the HCN abundance is higher than expected. We dynamically measure the mass of the central star to be 2.17±0.07 M{sub ⊙}, which is inconsistent with the previously determined spectral type of K5. We also report the detection of a spatially unresolved high-velocity blueshifted excess emission feature with a measurable positional offset from the central star, consistent with a Keplerian orbit at 60 ± 20 au. Using the integrated flux of the feature in HCO{sup +} (4–3), we estimate the total H{sub 2} gas mass of this feature to be at least 1.8--8 M{sub Jupiter}, depending on the assumed temperature. The feature is due to a local temperature and/or density enhancement consistent with either a hydrodynamic vortex or the expected signature of the envelope of a forming protoplanet within the disk.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

On the Accuracy of the ALMA Flux Calibration in the Time Domain and across Spectral Windows

A diverse array of science goals requires accurate flux calibration of observations with the Atacama Large Millimeter/submillimeter array (ALMA); however, this goal remains challenging due to the stochastic time-variability of the “grid” quasars ALMA uses for calibration. In this work, we use 343.5 GHz (Band 7) ALMA Atacama Compact Array observations of four bright and stable young stellar objects over seven epochs to independently assess the accuracy of the ALMA flux calibration and to refine the relative calibration across epochs. The use of these four extra calibrators allows us to achieve an unprecedented relative ALMA calibration accuracy of ~3%. On the other hand, when the observatory calibrator catalog is not up to date, the Band 7 data calibrated by the ALMA pipeline may have a flux calibration poorer than the nominal 10%, which can be exacerbated by weather-related phase decorrelation when self-calibration of the science target is either not possible or not attempted. We also uncover a relative flux calibration uncertainty between spectral windows of 0.8%, implying that measuring spectral indices within a single ALMA band is likely highly uncertain. We thus recommend various methods for science goals requiring high flux accuracy and robust calibration, in particular, the observation of additional calibrators combined with a relative calibration strategy, and observation of solar system objects for high absolute accuracy.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Final Targeting Strategy for the Sloan Digital Sky Survey IV Apache Point Observatory Galactic Evolution Experiment 2 North Survey

The Apache Point Observatory Galactic Evolution Experiment 2 (APOGEE-2) is a dual-hemisphere, near-infrared (NIR), spectroscopic survey with the goal of producing a chemodynamical mapping of the Milky Way. The targeting for APOGEE-2 is complex and has evolved with time. In this paper, we present the updates and additions to the initial targeting strategy for APOGEE-2N presented in Zasowski et al. (2017). These modifications come in two implementation modes: (i) “Ancillary Science Programs” competitively awarded to Sloan Digital Sky Survey IV PIs through proposal calls in 2015 and 2017 for the pursuit of new scientific avenues outside the main survey, and (ii) an effective 1.5 yr expansion of the survey, known as the Bright Time Extension (BTX), made possible through accrued efficiency gains over the first years of the APOGEE-2N project. For the 23 distinct ancillary programs, we provide descriptions of the scientific aims, target selection, and how to identify these targets within the APOGEE-2 sample. The BTX permitted changes to the main survey strategy, the inclusion of new programs in response to scientific discoveries or to exploit major new data sets not available at the outset of the survey design, and expansions of existing programs to enhance their scientific success and reach. After describing the motivations, implementation, and assessment of these programs, we also leave a summary of lessons learned from nearly a decade of APOGEE-1 and APOGEE-2 survey operations. Finally, a companion paper, F. Santana et al. (submitted; AAS29036), provides a complementary presentation of targeting modifications relevant to APOGEE-2 operations in the Southern Hemisphere.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

Final Targeting Strategy for the SDSS-IV APOGEE-2S Survey

APOGEE is a high-resolution (R ~ 22,000), near-infrared, multi-epoch, spectroscopic survey of the Milky Way. The second generation of the APOGEE project, APOGEE-2, includes an expansion of the survey to the Southern Hemisphere called APOGEE-2S. This expansion enabled APOGEE to perform a fully panoramic mapping of all of the main regions of the Milky Way; in particular, by operating in the H band, APOGEE is uniquely able to probe the dust-hidden inner regions of the Milky Way that are best accessed from the Southern Hemisphere. In this paper we present the targeting strategy of APOGEE-2S, with special attention to documenting modifications to the original, previously published plan. The motivation for these changes is explained as well as an assessment of their effectiveness in achieving their intended scientific objective. In anticipation of this being the last paper detailing APOGEE targeting, we present an accounting of all such information complete through the end of the APOGEE-2S project; this includes several main survey programs dedicated to exploration of major stellar populations and regions of the Milky Way, as well as a full list of programs contributing to the APOGEE database through allocations of observing time by the Chilean National Time Allocation Committee and the Carnegie Institution for Science. This work was presented along with a companion article, Beaton et al. (2021), presenting the final target selection strategy adopted for APOGEE-2 in the Northern Hemisphere.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

The Open Cluster Chemical Abundances and Mapping Survey. VI. Galactic Chemical Gradient Analysis from APOGEE DR17

The goal of the Open Cluster Chemical Abundances and Mapping (OCCAM) survey is to constrain key Galactic dynamic and chemical evolution parameters by the construction and analysis of a large, comprehensive, uniform data set of infrared spectra for stars in hundreds of open clusters. This sixth contribution from the OCCAM survey presents analysis of SDSS/APOGEE Data Release 17 (DR17) results for a sample of stars in 150 open clusters, 94 of which we designate to be "high-quality" based on the appearance of their color–magnitude diagram. We find the APOGEE DR17-derived [Fe/H] values to be in good agreement with those from previous high-resolution spectroscopic open cluster abundance studies. Using a subset of the high-quality sample, the Galactic abundance gradients were measured for 16 chemical elements, including [Fe/H], for both Galactocentric radius ($R$ GC ) and guiding center radius ($R$ guide ). We find an overall Galactic [Fe/H] versus RGC gradient of -0.073 ± 0.002 dex kpc -1 over the range of 6 > $R$ GC < 11.5 kpc, and a similar gradient is found for [Fe/H] versus $R$ guide . Significant Galactic abundance gradients are also noted for O, Mg, S, Ca, Mn, Na, Al, K, and Ce. Our large sample additionally allows us to explore the evolution of the gradients in four age bins for the remaining 15 elements.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Octofitter: Fast, Flexible, and Accurate Orbit Modeling to Detect Exoplanets

As next-generation imaging instruments and interferometers search for planets closer to their stars, they must contend with increasing orbital motion and longer integration times. These compounding effects make it difficult to detect faint planets but also present an opportunity. Increased orbital motion makes it possible to move the search for planets into the orbital domain, where direct images can be freely combined with the radial velocity and proper motion anomaly, even without a confirmed detection in any single epoch. In this paper, we present a fast and differentiable multimethod orbit-modeling and planet detection code called Octofitter. This code is designed to be highly modular and allows users to easily adjust priors, change parameterizations, and specify arbitrary function relations between the parameters of one or more planets. Octofitter further supplies tools for examining model outputs including prior and posterior predictive checks and simulation-based calibration. We demonstrate the capabilities of Octofitter on real and simulated data from different instruments and methods, including HD 91312, simulated JWST/NIRISS aperture masking interferometry observations, radial velocity curves, and grids of images from the Gemini Planet Imager. We show that Octofitter can reliably recover faint planets in long sequences of images with arbitrary orbital motion. This publicly available tool will enable the broad application of multiepoch and multimethod exoplanet detection, which could improve how future targeted ground- and space-based surveys are performed. Finally, its rapid convergence makes it a useful addition to the existing ecosystem of tools for modeling the orbits of directly imaged planets.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

First Results from BISTRO: A SCUBA-2 Polarimeter Survey of the Gould Belt

We present the first results from the B-fields In STar-forming Region Observations (BISTRO) survey, using the Sub-millimetre Common-User Bolometer Array 2 camera, with its associated polarimeter (POL-2), on the James Clerk Maxwell Telescope in Hawaii. We discuss the survey’s aims and objectives. We describe the rationale behind the survey, and the questions that the survey will aim to answer. The most important of these is the role of magnetic fields in the star formation process on the scale of individual filaments and cores in dense regions. We describe the data acquisition and reduction processes for POL-2, demonstrating both repeatability and consistency with previous data. We present a first-look analysis of the first results from the BISTRO survey in the OMC 1 region. We see that the magnetic field lies approximately perpendicular to the famous “integral filament” in the densest regions of that filament. Furthermore, we see an “hourglass” magnetic field morphology extending beyond the densest region of the integral filament into the less-dense surrounding material, and discuss possible causes for this. We also discuss the more complex morphology seen along the Orion Bar region. We examine the morphology of the field along the lower-density northeastern filament. We find consistency with previous theoretical models that predict magnetic fields lying parallel to low-density, non-self-gravitating filaments, and perpendicular to higher-density, self-gravitating filaments.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The JCMT Transient Survey: Data Reduction and Calibration Methods

Though there has been a significant amount of work investigating the early stages of low-mass star formation in recent years, the evolution of the mass assembly rate onto the central protostar remains largely unconstrained. Examining in depth the variation in this rate is critical to understanding the physics of star formation. Instabilities in the outer and inner circumstellar disk can lead to episodic outbursts. Observing these brightness variations at infrared or submillimeter wavelengths constrains the current accretion models. The JCMT Transient Survey is a three-year project dedicated to studying the continuum variability of deeply embedded protostars in eight nearby star-forming regions at a one-month cadence. We use the SCUBA-2 instrument to simultaneously observe these regions at wavelengths of 450 and 850 μ m. In this paper, we present the data reduction techniques, image alignment procedures, and relative flux calibration methods for 850 μ m data. We compare the properties and locations of bright, compact emission sources fitted with Gaussians over time. Doing so, we achieve a spatial alignment of better than 1″ between the repeated observations and an uncertainty of 2%–3% in the relative peak brightness of significant, localized emission. This combination of imaging performance is unprecedented in ground-based, single-dish submillimeter observations. Finally, we identify a few sources that show possible and confirmed brightness variations. These sources will be closely monitored and presented in further detail in additional studies throughout the duration of the survey.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The JCMT BISTRO Survey: The Magnetic Field Strength in the Orion A Filament

We determine the magnetic field strength in the OMC 1 region of the Orion A filament via a new implementation of the Chandrasekhar–Fermi method using observations performed as part of the James Clerk Maxwell Telescope (JCMT) B-Fields In Star-forming Region Observations (BISTRO) survey with the POL-2 instrument. We combine BISTRO data with archival SCUBA-2 and HARP observations to find a plane-of-sky magnetic field strength in OMC 1 of B{sub pos}=6.6±4.7 mG, where δB{sub pos}=4.7 mG represents a predominantly systematic uncertainty. We develop a new method for measuring angular dispersion, analogous to unsharp masking. We find a magnetic energy density of ∼1.7×10{sup −7} J m{sup −3} in OMC 1, comparable both to the gravitational potential energy density of OMC 1 (∼10{sup −7} J m{sup −3}) and to the energy density in the Orion BN/KL outflow (∼10{sup −7} J m{sup −3}). We find that neither the Alfvén velocity in OMC 1 nor the velocity of the super-Alfvénic outflow ejecta is sufficiently large for the BN/KL outflow to have caused large-scale distortion of the local magnetic field in the ∼500 yr lifetime of the outflow. Hence, we propose that the hourglass field morphology in OMC 1 is caused by the distortion of a primordial cylindrically symmetric magnetic field by the gravitational fragmentation of the filament and/or the gravitational interaction of the BN/KL and S clumps. We find that OMC 1 is currently in or near magnetically supported equilibrium, and that the current large-scale morphology of the BN/KL outflow is regulated by the geometry of the magnetic field in OMC 1, and not vice versa.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

How Do Stars Gain Their Mass? A JCMT/SCUBA-2 Transient Survey of Protostars in Nearby Star-forming Regions

Most protostars have luminosities that are fainter than expected from steady accretion over the protostellar lifetime. The solution to this problem may lie in episodic mass accretion—prolonged periods of very low accretion punctuated by short bursts of rapid accretion. However, the timescale and amplitude for variability at the protostellar phase is almost entirely unconstrained. In A James Clerk Maxwell Telescope/SCUBA-2 Transient Survey of Protostars in Nearby Star-forming Regions, we are monitoring monthly with SCUBA-2 the submillimeter emission in eight fields within nearby (<500 pc) star-forming regions to measure the accretion variability of protostars. The total survey area of ∼1.6 deg{sup 2} includes ∼105 peaks with peaks brighter than 0.5 Jy/beam (43 associated with embedded protostars or disks) and 237 peaks of 0.125–0.5 Jy/beam (50 with embedded protostars or disks). Each field has enough bright peaks for flux calibration relative to other peaks in the same field, which improves upon the nominal flux calibration uncertainties of submillimeter observations to reach a precision of ∼2%–3% rms, and also provides quantified confidence in any measured variability. The timescales and amplitudes of any submillimeter variation will then be converted into variations in accretion rate and subsequently used to infer the physical causes of the variability. This survey is the first dedicated survey for submillimeter variability and complements other transient surveys at optical and near-IR wavelengths, which are not sensitive to accretion variability of deeply embedded protostars.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The JCMT Transient Survey: Detection of Submillimeter Variability in a Class I Protostar EC 53 in Serpens Main

During the protostellar phase of stellar evolution, accretion onto the star is expected to be variable, but this suspected variability has been difficult to detect because protostars are deeply embedded. In this paper, we describe a submillimeter luminosity burst of the Class I protostar EC 53 in Serpens Main, the first variable found during our dedicated JCMT/SCUBA-2 monitoring program of eight nearby star-forming regions. EC 53 remained quiescent for the first six months of our survey, from 2016 February to August. The submillimeter emission began to brighten in 2016 September, reached a peak brightness of 1.5 times the faint state, and has been decaying slowly since 2017 February. The change in submillimeter brightness is interpreted as dust heating in the envelope, generated by a luminosity increase of the protostar of a factor of ≥4. The 850 μ m light curve resembles the historical K -band light curve, which varies by a factor of ∼6 with a 543 period and is interpreted as accretion variability excited by interactions between the accretion disk and a close binary system. The predictable detections of accretion variability observed at both near-infrared and submillimeter wavelengths make the system a unique test-bed, enabling us to capture the moment of the accretion burst and to study the consequences of the outburst on the protostellar disk and envelope.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2011

Meeting report of the RNA Ontology Consortium January 8-9, 2011

This report summarizes the proceedings of the structure mapping working group meeting of the RNA Ontology Consortium (ROC), held in Kona, Hawaii on January 8-9, 2011. The ROC hosted this workshop to facilitate collaborations among those researchers formalizing concepts in RNA, those developing RNA-related software, and those performing genome annotation and standardization. The workshop included three software presentations, extended round-table discussions, and the constitution of two new working groups, the first to address the need for better software integration and the second to discuss standardization and benchmarking of existing RNA annotation pipelines. These working groups have subsequently pursued concrete implementation of actions suggested during the discussion. Further information about the ROC and its activities can be found at http://roc.bgsu.edu/.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2026

Telomere-to-telomere assemblies of chromosome 10 reveal complex adaptive variation of 3-ketoacyl-CoA-synthases in Populus trichocarpa likely driven by Helitrons

The model woody plant Populus trichocarpa displays an atypical alkene-diverse wax cuticle likely driven by copy number variation (CNV) of 3-ketoacyl-CoA synthases ( KCS ), which has been difficult to confirm with short-read assemblies. Long-read sequencing enables the development of telomere-to-telomere resources to detect cryptic variation, including CNVs, which are currently missed. Integrating this information can improve genomic prediction for breeding and provide insights into the evolutionary basis of important traits. Our analysis of 78 long-read haplotypes from chromosome 10 identified more than twice as many KCS genes as previously reported, and numerous intragenic non-synonymous substitutions. Random Forest predictive models highlighted the importance of Potri.010G079500 in producing very long chain alkenes; however, its absence did not predict previously reported alkene-deficient phenotypes. Instead, alkene levels are best predicted by the combinations of KCS copies. Additionally, amino acid substitutions clustered around ligand and donor binding pockets, suggesting they contribute to differing wax cuticle composition. Finally, each KCS gene and copy was linked to a Helitron transposon. A phylogenetic analysis suggests Helitrons are the evolutionary mechanism for generating KCS tandem arrays. Long-read generated telomere-to-telomere assemblies of P. trichocarpa chromosome 10 revealed large-effect loci critical to genetic studies that are unattainable from short-reads. This new resource produced novel insights into genome structure and function, and a novel mechanism for generating tandem gene duplication. Our results highlight that, given current challenges in annotation and assembly, detailed and focused long-read sequences are key to interpreting complex genomic regions that contain tandem copy number variants.

09 BIOMASS FUELS↗
DOE OSTI2024

SCIMON: Scientific Inspiration Machines Optimized for Novelty

We explore and enhance the ability of neu- ral language models to generate novel scien- tific directions grounded in literature. Work on literature-based hypothesis generation has traditionally focused on binary link prediction— severely limiting the expressivity of hypothe- ses. This line of work also does not focus on optimizing novelty. We take a dramatic depar- ture with a novel setting in which models use as input background contexts (e.g., problems, experimental settings, goals), and output natu- ral language ideas grounded in literature. We present SCIMON, a modeling framework that uses retrieval of “inspirations” from past scien- tific papers, and explicitly optimizes for novelty by iteratively comparing to prior papers and up- dating idea suggestions until sufficient novelty is achieved. Comprehensive evaluations reveal that GPT-4 tends to generate ideas with over- all low technical depth and novelty, while our methods partially mitigate this issue. Our work represents a first step toward evaluating and developing language models that generate new ideas derived from the scientific literature.

Ji, Heng↗
DOE OSTI2025

Design Initiative for a 10 TeV pCM Wakefield Collider

This document outlines a community-driven Design Study for a 10 TeV pCM Wakefield Accelerator Collider. The 2020 ESPP Report emphasized the need for Advanced Accelerator R&D, and the 2023 P5 Report calls for the ``delivery of an end-to-end design concept, including cost scales, with self-consistent parameters throughout." This Design Study leverages recent experimental and theoretical progress resulting from a global R&D program in order to deliver a unified, 10 TeV Wakefield Collider concept. Wakefield Accelerators provide ultra-high accelerating gradients which enables an upgrade path that will extend the reach of Linear Colliders beyond the electroweak scale. Here, we describe the organization of the Design Study including timeline and deliverables, and we detail the requirements and challenges on the path to a 10 TeV Wakefield Collider.

43 PARTICLE ACCELERATORS↗