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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 703 records · Page 39
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

HST PanCET Program: A Complete Near-UV to Infrared Transmission Spectrum for the Hot Jupiter WASP-79b

We present a new optical transmission spectrum of the hot Jupiter WASP-79b. We observed three transits with the STIS instrument mounted on the Hubble Space Telescope (HST), spanning 0.3–1.0 μm. Combining these transits with previous observations, we construct a complete 0.3–5.0 μm transmission spectrum of WASP-79b. Both HST and ground-based observations show decreasing transit depths toward blue wavelengths, contrary to expectations from Rayleigh scattering or hazes. We infer atmospheric and stellar properties from the full near-UV to infrared transmission spectrum of WASP-79b using three independent retrieval codes, all of which yield consistent results. Our retrievals confirm previous detections of H{sub 2}O (at 4.0σ confidence) while providing moderate evidence of H{sup -} bound–free opacity (3.3σ) and strong evidence of stellar contamination from unocculted faculae (4.7σ). The retrieved H{sub 2}O abundance (~1%) suggests a superstellar atmospheric metallicity, though stellar or substellar abundances remain consistent with present observations (O/H = 0.3–34× stellar). All three retrieval codes obtain a precise H{sup -} abundance constraint: log(X{sub H{sup -}}) ≈ -8.0 ± 0.7. The potential presence of H{sup -} suggests that James Webb Space Telescope observations may be sensitive to ionic chemistry in the atmosphere of WASP-79b. The inferred faculae are ~500 K hotter than the stellar photosphere, covering ~15% of the stellar surface. Our analysis underscores the importance of observing UV–optical transmission spectra in order to disentangle the influence of unocculted stellar heterogeneities from planetary transmission spectra.

47 OTHER INSTRUMENTATION↗
DOE OSTI2017

OmegaWINGS: The First Complete Census of Post-starburst Galaxies in Clusters in the Local Universe

Galaxies that abruptly interrupt their star formation in <1.5 Gyr present recognizable features in their spectra (no emission and Hδ in absorption) and are called post-starburst (PSB) galaxies. By studying their stellar population properties and their location within the clusters, we obtain valuable insights on the physical processes responsible for star formation quenching. We present the first complete characterization of PSB galaxies in clusters at 0.04<z<0.07, based on WINGS and OmegaWINGS data, and contrast their properties to those of passive (PAS) and emission-line (EML) galaxies. For V<20, PSBs represent 7.2 ± 0.2% of cluster galaxies within 1.2 virial radii. Their incidence slightly increases from the outskirts toward the cluster center and from the least toward the most luminous and massive clusters, defined in terms of X-ray luminosity and velocity dispersion. The phase-space analysis and velocity-dispersion profile suggest that PSBs represent a combination of galaxies with different accretion histories. Moreover, PSBs with the strongest Hδ are consistent with being recently accreted. PSBs have stellar masses, magnitudes, colors, and morphologies intermediate between PAS and EML galaxies, typical of a population in transition from being star-forming to passive. Comparing the fraction of PSBs to the fraction of galaxies in transition on longer timescales, we estimate that the short-timescale star formation quenching channel contributes two times more than the long timescale one to the growth of the passive population. Processes like ram-pressure stripping and galaxy–galaxy interactions are more efficient than strangulation in affecting star formation.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

The Complete Calibration of the Color–Redshift Relation (C3R2) Survey: Survey Overview and Data Release 1

A key goal of the Stage IV dark energy experiments Euclid , LSST, and WFIRST is to measure the growth of structure with cosmic time from weak lensing analysis over large regions of the sky. Weak lensing cosmology will be challenging: in addition to highly accurate galaxy shape measurements, statistically robust and accurate photometric redshift (photo- z ) estimates for billions of faint galaxies will be needed in order to reconstruct the three-dimensional matter distribution. Here we present an overview of and initial results from the Complete Calibration of the Color–Redshift Relation (C3R2) survey, which is designed specifically to calibrate the empirical galaxy color–redshift relation to the Euclid depth. These redshifts will also be important for the calibrations of LSST and WFIRST . The C3R2 survey is obtaining multiplexed observations with Keck (DEIMOS, LRIS, and MOSFIRE), the Gran Telescopio Canarias (GTC; OSIRIS), and the Very Large Telescope (VLT; FORS2 and KMOS) of a targeted sample of galaxies that are most important for the redshift calibration. We focus spectroscopic efforts on undersampled regions of galaxy color space identified in previous work in order to minimize the number of spectroscopic redshifts needed to map the color–redshift relation to the required accuracy. We present the C3R2 survey strategy and initial results, including the 1283 high-confidence redshifts obtained in the 2016A semester and released as Data Release 1.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2017

A Complete ALMA Map of the Fomalhaut Debris Disk

We present ALMA mosaic observations at 1.3 mm (223 GHz) of the Fomalhaut system with a sensitivity of 14 μ Jy/beam. These observations provide the first millimeter map of the continuum dust emission from the complete outer debris disk with uniform sensitivity, enabling the first conclusive detection of apocenter glow. We adopt an MCMC modeling approach that accounts for the eccentric orbital parameters of a collection of particles within the disk. The outer belt is radially confined with an inner edge of 136.3 ± 0.9 au and width of 13.5 ± 1.8 au. We determine a best-fit eccentricity of 0.12 ± 0.01. Assuming a size distribution power-law index of q = 3.46 ± 0.09, we constrain the dust absorptivity power-law index β to be 0.9 < β < 1.5. The geometry of the disk is robustly constrained with inclination 65.°6 ± 0.°3, position angle 337.°9 ± 0.°3, and argument of periastron 22.°5 ± 4.°3. Our observations do not confirm any of the azimuthal features found in previous imaging studies of the disk with Hubble Space Telescope , SCUBA, and ALMA. However, we cannot rule out structures ≤10 au in size or that only affect smaller grains. The central star is clearly detected with a flux density of 0.75 ± 0.02 mJy, significantly lower than predicted by current photospheric models. We discuss the implications of these observations for the directly imaged Fomalhaut b and the inner dust belt detected at infrared wavelengths.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2020

The Completed SDSS-IV Extended Baryon Oscillation Spectroscopic Survey: Baryon Acoustic Oscillations with Ly$α$ Forests

Here, we present a measurement of baryonic acoustic oscillations (BAO) from Lyman-α (Lyα) absorption and quasars at an effective redshift $z = 2.33$ using the complete extended Baryonic Oscillation Spectroscopic Survey (eBOSS). The sixteenth and final eBOSS data release (SDSS DR16) contains all data from eBOSS and its predecessor, the Baryonic Oscillation Spectroscopic Survey (BOSS), providing 210,005 quasars with $z_q > 2.10$ that are used to measure Lyα absorption. We measure the BAO scale both in the auto-correlation of Ly$α$ absorption and in its cross correlation with 341,468 quasars with redshift $z_q > 1.77$. Apart from the statistical gain from new quasars and deeper observations, the main improvements over previous work come from more accurate modeling of physical and instrumental correlations and the use of new sets of mock data. Combining the BAO measurement from the auto- and cross-correlation yields the constraints of the two ratios $D_H(z = 2.33)/r_d = 8.99 ± 0.19$ and $D_M(z = 2.33)/r_d = 37.5 ± 1.1$, where the error bars are statistical. These results are within $1.5σ$ of the prediction of the flat-ΛCDM cosmology of Planck (2016). The analysis code, picca, the catalog of the flux-transmission field measurements, and the $Δ\chi^2$ surfaces are publicly available.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Hubble Space Telescope Observations of GW170817: Complete Light Curves and the Properties of the Galaxy Merger of NGC 4993

We present the complete set of Hubble Space Telescope imaging of the binary neutron star merger GW170817 and its optical counterpart AT 2017gfo. Including deep template imaging in F814W, F110W, F140W, and F160W at 3.4 yr post-merger, we reanalyze the full light curve of AT 2017gfo across 12 bands from 5 to 1273 rest-frame days after merger. We obtain four new detections of the short γ-ray burst 170817A afterglow from 109 to 170 rest-frame days post-merger. These detections are consistent with the previously observed β = -0.6 spectral index in the afterglow light curve with no evidence for spectral evolution. We also analyze our limits in the context of kilonova afterglow or IR dust echo emission but find that our limits are not constraining for these models. We use the new data to construct deep optical and IR stacks, reaching limits of M = -6.3 to -4.6 mag, to analyze the local environment around AT 2017gfo and low surface brightness features in its host galaxy NGC 4993. We rule out the presence of any globular cluster at the position of AT 2017gfo to 2.3 × 10$^{4}$L$_{⊙}$, including those with the reddest V - H colors. Finally, we analyze the substructure of NGC 4993 in deep residual imaging and find shell features that extend up to 71."8 (14.2 kpc) from NGC 4993. The shells have a cumulative stellar mass of 6.3 × 10$^{8}$M$_{⊙}$, roughly 2% of NGC 4993, and mass-weighted ages of >3 Gyr. We conclude that it was unlikely that the GW170817 progenitor system formed in the galaxy merger.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2022

Toward a More Complete Optical Census of Active Galactic Nuclei via Spatially Resolved Spectroscopy

While emission line flux ratio diagnostics are the most common technique for identifying active galactic nuclei (AGNs) in optical spectra, applying this approach to single-fiber spectra of galaxies can omit entire subpopulations of AGNs. Here, we use spatially resolved spectroscopy from the Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey to construct a sample of 10 galaxies where Baldwin–Philips–Terlevich line flux ratio diagnostics classify each galaxy’s central 3" spectrum as LINER or star-forming, while >10% of the spaxels in the galaxy’s MaNGA footprint are classified as Seyfert. We obtain Chandra observations of these 10 galaxies with off-nuclear Seyfert regions to determine whether AGNs are actually present in them. Our main result is that 7–10 (depending on strictness of criteria) of the galaxies host one or more X-ray AGNs, even though none of them were classified as AGNs based on their single-fiber optical spectra. We find that these AGNs were not identified in the single-fiber spectra because they are AGNs in the nuclei of companion galaxies, low-luminosity AGNs, dust-obscured AGNs, and/or flickering AGNs. In summary, we find that off-nuclear AGN signatures may increase the number of known AGNs by a factor of two over what conventional single nuclear fiber spectra identify. Our results show that spatially resolved spectroscopy can be leveraged to reveal a more complete census of AGNs that are traditionally missed by single-fiber spectra.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2023

Systematically Measuring Ultra-diffuse Galaxies (SMUDGes). V. The Complete SMUDGes Catalog and the Nature of Ultradiffuse Galaxies

We present the completed catalog of ultradiffuse galaxy (UDG) candidates (7070 objects) from our search of the DR9 Legacy Survey images, including distance and total mass estimates for 1529 and 1436 galaxies, respectively, that we provide and describe in detail. From the sample with estimated distances, we obtain a sample of 585 UDGs (μ 0, g ≥ 24 mag arcsec –2 and r e ≥ 1.5 kpc) over 20,000 square degrees of sky in various environments. We conclude that UDGs in our sample are limited to 10 10 ≲ M h /M ⊙ ≲ 10 11.5 and are on average a factor of 1.5–7 deficient in stars relative to the general population of galaxies of the same total mass. That factor increases with increasing galaxy size and mass up to a factor of ~10 when the total mass of the UDG increases beyond M h = 10 11 M ⊙ . We do not find evidence that this factor has a dependence on the UDGs large-scale environment.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2013

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (Z-7692 T ) from the alkaline Lake Magadi in the East African Rift

Spirochaeta africana Zhilina et al. 1996 is an anaerobic, aerotolerant, spiral-shaped bacterium that is motile via periplasmic flagella. The type strain of the species, Z-7692 T , was isolated in 1993 or earlier from a bacterial bloom in the brine under the trona layer in a shallow lagoon of the alkaline equatorial Lake Magadi in Kenya. Here we describe the features of this organism, together with the complete genome sequence, and annotation. Considering the pending reclassification of S. caldaria to the genus Treponema, S. africana is only the second 'true' member of the genus Spirochaeta with a genome-sequenced type strain to be published. The 3,285,855 bp long genome of strain Z-7692 T with its 2,817 protein-coding and 57 RNA genes is a part of the G nomic Encyclopedia of Bacteria and Archaea project.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2014

Complete genome sequence of Anabaena variabilis ATCC 29413

Anabaena variabilis ATCC 29413 is a filamentous, heterocyst-forming cyanobacterium that has served as a model organism, with an extensive literature extending over 40 years. The strain has three distinct nitrogenases that function under different environmental conditions and is capable of photoautotrophic growth in the light and true heterotrophic growth in the dark using fructose as both carbon and energy source. While this strain was first isolated in 1964 in Mississippi and named Anabaena flos-aquae MSU A-37, it clusters phylogenetically with cyanobacteria of the genus Nostoc. The strain is a moderate thermophile, growing well at approximately 40° C. Here we provide some additional characteristics of the strain, and an analysis of the complete genome sequence

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2013

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336T), a representative of the Roseobacter clade

Leisingera methylohalidivorans Schaefer et al. 2002 emend. Vandecandelaere et al. 2008 is the type species of the genus Leisingera. The genus belongs to the Roseobacter clade (Rhodobacteraceae, Alphaproteobacteria), a widely distributed lineage in marine environments. Leisingera and particularly L. methylohalidivorans strain MB2T is of special interest due to its methylotrophy. Here we describe the complete genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. The 4,650,996 bp long genome with its 4,515 protein-coding and 81 RNA genes consists of three replicons, a single chromosome and two extrachromosomal elements with sizes of 221 kb and 285 kb.

Rhodobacteraceae↗
DOE OSTI2013

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production

Enterobacter sp. IIT-BT 08 belongs to Phylum: Proteobacteria, Class: Gammaproteobacteria, Order: Enterobacteriales, Family: Enterobacteriaceae. The organism was isolated from the leaves of a local plant near the Kharagpur railway station, Kharagpur, West Bengal, India. It has been extensively studied for fermentative hydrogen production because of its high hydrogen yield. For further enhancement of hydrogen production by strain development, complete genome sequence analysis was carried out. Sequence analysis revealed that the genome was linear, 4.67 Mbp long and had a GC content of 56.01%. The genome properties encode 4,393 protein-coding and 179 RNA genes. Additionally, a putative pathway of hydrogen production was suggested based on the presence of formate hydrogen lyase complex and other related genes identified in the genome. Thus, in the present study we describe the specific properties of the organism and the generation, annotation and analysis of its genome sequence as well as discuss the putative pathway of hydrogen production by this organism.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2013

Complete genome sequence of Arthrobacter sp. strain FB24

Arthrobacter sp. strain FB24 is a species in the genus Arthrobacter Conn and Dimmick 1947, in the family Micrococcaceae and class Actinobacteria. A number of Arthrobacter genome sequences have been completed because of their important role in soil, especially bioremediation. This isolate is of special interest because it is tolerant to multiple metals and it is extremely resistant to elevated concentrations of chromate. The genome consists of a 4,698,945 bp circular chromosome and three plasmids (96,488, 115,507, and 159,536 bp, a total of 5,070,478 bp), coding 4,536 proteins of which 1,257 are without known function. This genome was sequenced as part of the DOE Joint Genome Institute Program.

arthrobacter sp. strain FB24↗
DOE OSTI2020

Improving climate model coupling through a complete mesh representation: a case study with E3SM (v1) and MOAB (v5.x)

One of the fundamental factors contributing to the spatiotemporal inaccuracy in climate modeling is the mapping of solution field data between different discretizations and numerical grids used in the coupled component models. The typical climate computational workflow involves evaluation and serialization of the remapping weights during the preprocessing step, which is then consumed by the coupled driver infrastructure during simulation to compute field projections. Tools like Earth System Modeling Framework (ESMF) and TempestRemap offer capability to generate conservative remapping weights, while the Model Coupling Toolkit (MCT) that is utilized in many production climate models exposes functionality to make use of the operators to solve the coupled problem. However, such multistep processes present several hurdles in terms of the scientific workflow and impede research productivity. In order to overcome these limitations, we present a fully integrated infrastructure based on the Mesh Oriented datABase (MOAB) library, which allows for a complete description of the numerical grids and solution data used in each submodel. Through a scalable advancing-front intersection algorithm, the supermesh of the source and target grids are computed, which is then used to assemble the high-order, conservative, and monotonicity-preserving remapping weights between discretization specifications. The Fortran-compatible interfaces in MOAB are utilized to directly link the submodels in the Energy Exascale Earth System Model (E3SM) to enable online remapping strategies in order to simplify the coupled workflow process. We demonstrate the superior computational efficiency of the remapping algorithms in comparison with other state-of-the-science tools and present strong scaling results on large-scale machines for computing remapping weights between the spectral element atmosphere and finite volume discretizations on the polygonal ocean grids.

58 GEOSCIENCES↗
DOE OSTI2016

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

Due to their economic relevance, the study of plant pathogen interactions is of importance. However, elucidating these interactions and their underlying molecular mechanisms remains challenging since both host and pathogen need to be fully genetically accessible organisms. Here we present milestones in the establishment of a new biotrophic model pathosystem: Ustilago bromivora and Brachypodium sp. We provide a complete toolset, including an annotated fungal genome and methods for genetic manipulation of the fungus and its host plant. This toolset will enable researchers to easily study biotrophic interactions at the molecular level on both the pathogen and the host side. Moreover, our research on the fungal life cycle revealed a mating type bias phenomenon. U. bromivora harbors a haplo-lethal allele that is linked to one mating type region. As a result, the identified mating type bias strongly promotes inbreeding, which we consider to be a potential speciation driver.

Life Sciences & Biomedicine - Other Topics↗
DOE OSTI2019

The complete structure of the human TFIIH core complex

Transcription factor IIH (TFIIH) is a heterodecameric protein complex critical for transcription initiation by RNA polymerase II and nucleotide excision DNA repair. The TFIIH core complex is sufficient for its repair functions and harbors the XPB and XPD DNA-dependent ATPase/helicase subunits, which are affected by human disease mutations. Transcription initiation additionally requires the CdK activating kinase subcomplex. Previous structural work has provided only partial insight into the architecture of TFIIH and its interactions within transcription pre-initiation complexes. Here, we present the complete structure of the human TFIIH core complex, determined by phase-plate cryo-electron microscopy at 3.7 Å resolution. The structure uncovers the molecular basis of TFIIH assembly, revealing how the recruitment of XPB by p52 depends on a pseudo-symmetric dimer of homologous domains in these two proteins. The structure also suggests a function for p62 in the regulation of XPD, and allows the mapping of previously unresolved human disease mutations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Uncovering the basis of protein-protein interaction specificity with a combinatorially complete library

Protein-protein interaction specificity is often encoded at the primary sequence level. However, the contributions of individual residues to specificity are usually poorly understood and often obscured by mutational robustness, sequence degeneracy, and epistasis. Using bacterial toxin-antitoxin systems as a model, we screened a combinatorially complete library of antitoxin variants at three key positions against two toxins. This library enabled us to measure the effect of individual substitutions on specificity in hundreds of genetic backgrounds. These distributions allow inferences about the general nature of interface residues in promoting specificity. We find that positive and negative contributions to specificity are neither inherently coupled nor mutually exclusive. Further, a wild-type antitoxin appears optimized for specificity as no substitutions improve discrimination between cognate and non-cognate partners. By comparing crystal structures of paralogous complexes, we provide a rationale for our observations. Collectively, this work provides a generalizable approach to understanding the logic of molecular recognition.

59 BASIC BIOLOGICAL SCIENCES↗