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At least 703 records · Page 39

The J-elongated conformation of β 2 -glycoprotein I predominates in solution: Implications for our understanding of antiphospholipid syndrome

β 2 -Glycoprotein I (β 2 GPI) is an abundant plasma protein displaying phospholipid-binding properties. Because it binds phospholipids, it is a target of antiphospholipid antibodies (aPLs) in antiphospholipid syndrome (APS), a life-threatening autoimmune thrombotic disease. Indeed, aPLs prefer membrane-bound β 2 GPI to that in solution. β 2 GPI exists in two almost equally populated redox states: oxidized, in which all the disulfide bonds are formed, and reduced, in which one or more disulfide bonds are broken. Furthermore, β 2 GPI can adopt multiple conformations (i.e. J-elongated, S-twisted, and O-circular). While strong evidence indicates that the J-form is the structure bound to aPLs, which conformation exists and predominates in solution remains controversial, and so is the conformational pathway leading to the bound state. Here, we report that human recombinant β 2 GPI purified under native conditions is oxidized. Moreover, under physiological pH and salt concentrations, this oxidized form adopts a J-elongated, flexible conformation, not circular or twisted, in which the N-terminal domain I (DI) and the C-terminal domain V (DV) are exposed to the solvent. Consistent with this model, binding kinetics and mutagenesis experiments revealed that in solution the J-form interacts with negatively charged liposomes and with MBB2, a monoclonal anti-DI antibody that recapitulates most of the features of pathogenic aPLs. We conclude that the preferential binding of aPLs to phospholipid-bound β 2 GPI arises from the ability of its preexisting J-form to accumulate on the membranes, thereby offering an ideal environment for aPL binding. We propose that targeting the J-form of β 2 GPI provides a strategy to block pathogenic aPLs in APS.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

The cosmological evolution of self-interacting dark matter

We study the evolution of cosmological perturbations in dark-matter models with elastic and velocity-independent self interactions. Such interactions are imprinted in the matter-power spectrum as dark acoustic oscillations, which can be experimentally explored to determine the strength of the self scatterings. Models with self interactions have similarities to warm dark matter, as they lead to suppression of power on small scales when the dark-matter velocity dispersion is sizable. Nonetheless, both the physical origin and the extent of the suppression differ for self-interacting dark matter from conventional warm dark matter, with a dark sound horizon controlling the reduction of power in the former case, and a free-streaming length in the latter. We thoroughly analyze these differences by performing computations of the linear power spectrum using a newly developed Boltzmann code. We find that while current Lyman-α data disfavor conventional warm dark matter with a mass less than 5.3 keV, when self interactions are included at their maximal value consistent with bounds from the Bullet Cluster, the limits are relaxed to 4.4 keV. Lastly, we make use of our analysis to set novel bounds on light scalar singlet dark matter.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A detailed chemical study of the extreme velocity stars in the galaxy

ABSTRACT Two decades on, the study of hypervelocity stars is still in its infancy. These stars can provide novel constraints on the total mass of the Galaxy and its dark matter distribution. However how these stars are accelerated to such high velocities is unclear. Various proposed production mechanisms for these stars can be distinguished using chemo-dynamic tagging. The advent of Gaia and other large surveys have provided hundreds of candidate hyper velocity objects to target for ground-based high-resolution follow-up observations. We conduct high-resolution spectroscopic follow-up observations of 16 candidate late-type hyper velocity stars using the Apache Point Observatory and the McDonald Observatory. We derive atmospheric parameters and chemical abundances for these stars. We measure up to 22 elements, including the following nucleosynthetic families: $\alpha$ (Mg, Si, Ca, and Ti), light/odd-Z (Na, Al, V, Cu, and Sc), Fe-peak (Fe, Cr, Mn, Co, Ni, and Zn), and neutron capture (Sr, Y, Zr, Ba, La, Nd, and Eu). Our kinematic analysis shows one candidate is unbound, two are marginally bound, and the remainder are bound to the Galaxy. Finally, for the three unbound or marginally bound stars, we perform orbit integration to locate possible globular cluster or dwarf galaxy progenitors. We do not find any likely candidate systems for these stars and conclude that the unbound stars are likely from the the stellar halo, in agreement with the chemical results. The remaining bound stars are all chemically consistent with the stellar halo as well.

79 ASTRONOMY AND ASTROPHYSICS↗

Structures, activity and mechanism of the Type IIS restriction endonuclease PaqCI

Abstract Type IIS restriction endonucleases contain separate DNA recognition and catalytic domains and cleave their substrates at well-defined distances outside their target sequences. They are employed in biotechnology for a variety of purposes, including the creation of gene-targeting zinc finger and TAL effector nucleases and DNA synthesis applications such as Golden Gate assembly. The most thoroughly studied Type IIS enzyme, FokI, has been shown to require multimerization and engagement with multiple DNA targets for optimal cleavage activity; however, details of how it or similar enzymes forms a DNA-bound reaction complex have not been described at atomic resolution. Here we describe biochemical analyses of DNA cleavage by the Type IIS PaqCI restriction endonuclease and a series of molecular structures in the presence and absence of multiple bound DNA targets. The enzyme displays a similar tetrameric organization of target recognition domains in the absence or presence of bound substrate, with a significant repositioning of endonuclease domains in a trapped DNA-bound complex that is poised to deliver the first of a series of double-strand breaks. PaqCI and FokI share similar structural mechanisms of DNA cleavage, but considerable differences in their domain organization and quaternary architecture, facilitating comparisons between distinct Type IIS enzymes.

59 BASIC BIOLOGICAL SCIENCES↗

A sorghum ascorbate peroxidase with four binding sites has activity against ascorbate and phenylpropanoids

Abstract In planta, H2O2 is produced as a by-product of enzymatic reactions and during defense responses. Ascorbate peroxidase (APX) is a key enzyme involved in scavenging cytotoxic H2O2. Here, we report the crystal structure of cytosolic APX from sorghum (Sorghum bicolor) (Sobic.001G410200). While the overall structure of SbAPX was similar to that of other APXs, SbAPX uniquely displayed four bound ascorbates rather than one. In addition to the ɣ-heme pocket identified in other APXs, ascorbates were bound at the δ-meso and two solvent-exposed pockets. Consistent with the presence of multiple binding sites, our results indicated that the H2O2-dependent oxidation of ascorbate displayed positive cooperativity. Bound ascorbate at two surface sites established an intricate proton network with ascorbate at the ɣ-heme edge and δ-meso sites. Based on crystal structures, steady-state kinetics, and site-directed mutagenesis results, both ascorbate molecules at the ɣ-heme edge and the one at the surface are expected to participate in the oxidation reaction. We provide evidence that the H2O2-dependent oxidation of ascorbate by APX produces a C2-hydrated bicyclic hemiketal form of dehydroascorbic acid at the ɣ-heme edge, indicating two successive electron transfers from a single-bound ascorbate. In addition, the δ-meso site was shared with several organic compounds, including p-coumaric acid and other phenylpropanoids, for the potential radicalization reaction. Site-directed mutagenesis of the critical residue at the ɣ-heme edge (R172A) only partially reduced polymerization activity. Thus, APX removes stress-generated H2O2 with ascorbates, and also uses this same H2O2 to potentially fortify cell walls via oxidative polymerization of phenylpropanoids in response to stress.

Plant Sciences↗

Time Correlations from Steady-State Expectation Values

Recovering properties of correlation functions is typically challenging. On the one hand, experimentally, it requires measurements with a temporal resolution finer than the system’s dynamics. On the other hand, analytical or numerical analysis requires solving the system evolution. Here, we use recent results of quantum metrology with continuous measurements to derive general lower bounds on the relaxation and second-order correlation times that are both easy to calculate and measure. These bounds are based solely on steady-state expectation values and their derivatives with respect to a system parameter, and can be readily extended to the autocorrelation of arbitrary observables. We validate our method on two examples of critical quantum systems: a critical driven-dissipative resonator, where the bound matches analytical results for the dynamics, and the infinite-range Ising model, where only the steady state is solvable, and thus the bound provides information beyond the reach of existing analytical approaches. Our results can be applied to the experimental characterization of ultrafast systems and to the theoretical analysis of many-body models whose dynamics are hard to compute.

Górecki, Wojciech [INFN, Pavia] (ORCID:00000001991↗

Quantum speed limit for the out-of-time-ordered correlator from an open-system perspective

Scrambling, the delocalization of initially localized quantum information, is commonly characterized by the out-of-time-ordered correlator (OTOC). Employing the OTOC–Renyi-2 entropy theorem, we derive a quantum speed limit for the OTOC, which sets a lower bound for the rate with which information can be scrambled. This bound becomes particularly tractable by describing the scrambling of information in a closed quantum system as an effective decoherence process of an open system interacting with an environment. We prove that decay of the OTOC can be bounded by the strength of the system-environment coupling and two-point environmental correlation functions. We validate our analytic bound numerically using the nonintegrable transverse field Ising model. Furthermore, our results provide a universal and model-agnostic quantitative framework for understanding the dynamical limits of information spreading across quantum many-body physics, condensed matter systems, and engineered quantum platforms.

Fermions↗

Ionization and temperature measurements in warm dense copper using x-ray absorption spectroscopy

We detail experimental results inferring ionization and temperature for warm dense copper plasmas at several times solid density (15–25 g/cm 3 ) and temperatures of 10–21 eV. Experiments performed at the OMEGA Laser Facility generate uniform warm dense matter conditions via symmetric shock compression of a buried copper layer. The plasma is probed with a laser-generated x-ray source to collect the K-shell x-ray absorption spectrum. Fitting bound-bound absorption contributions from constituent charge states of copper provides an estimated $\overline{Z}$ of approximately 4–7 for these warm dense copper plasmas. We find that these partially ionized plasmas have K-edge shifts of 12–30 eV and bound-bound resonance 1s → 3p absorption shifts of 4–26 eV with respect to the cold K edge. This study provides necessary experimental data to improve ionization and opacity models in the warm dense matter regime.

42 ENGINEERING↗

Generalized measure of quantum Fisher information

Here, we present a lower bound on the quantum Fisher information (QFI) which is efficiently computable on near-term quantum devices. This bound itself is of interest, as we show that it satisfies the canonical criteria of a QFI measure. Specifically, it is essentially a QFI measure for subnormalized states, and hence it generalizes the standard QFI in this sense. Our bound employs the generalized fidelity applied to a truncated state, which is constructed via the m largest eigenvalues and their corresponding eigenvectors of the probe quantum state ρ θ . Focusing on unitary families of exact states, we analyze the properties of our proposed lower bound, and demonstrate its utility for efficiently estimating the QFI.

97 MATHEMATICS AND COMPUTING↗

Superconductivity-enhanced spin pumping: Role of Andreev resonances

Here we describe a simple hybrid superconductor–ferromagnetic-insulator structure manifesting spin-resolved Andreev bound states in which dynamic magnetization is employed to probe spin related physics. We show that, at low bias and below T c , the transfer of spin angular momentum pumped by an externally driven ferromagnetic insulator is greatly affected by the formation of spin-resolved Andreev bound states. Our results indicate that these bound states capture the essential physics of condensate-facilitated spin flow. For finite thicknesses of the superconducting layer, comparable to the coherence length, resonant Andreev bound states render highly transmitting subgap spin transport channels. We point out that the resonant enhancement of the subgap transport channels establishes a prototype Fabry-Pérot resonator for spin pumping.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Trions in twisted bilayer graphene

The strong-coupling phase diagram of magic-angle twisted bilayer graphene (TBG) predicts a series of exact one-particle charge ±1 gapped excitations on top of the integer-filled ferromagnetic ground states. Finite-size exact diagonalization studies showed that these are the lowest charge ±1 excitations in the system (for 10 nm screening length), with the exception of charge +1 at filling -1 in the chiral limit. In the current paper we show that this “trion bound state,” a 3-particle, charge 1 excitation of the insulating ferromagnetic ground state of the projected Hamiltonian of TBG, is the lowest charge +1 overall excitation at ν =-1, and also for some large (≈20 nm) screening lengths at ν =-2 in the chiral limit and with very small binding energy. At other fillings, we show that trion bound states do exist, but only for momentum ranges that do not cover the entire moiré Brillouin zone. The trion bound states (at different momenta) exist for finite parameter range w 0 /w 1 but they all disappear in the continuum far below the realistic values of w 0 /w 1 = 0.8. Thus we find the conditions for the existence of the trion bound state, a good variational wave function for it, and investigate its behavior for different screening lengths, at all integer fillings, on both the electron and hole sides.

36 MATERIALS SCIENCE↗

Effective J -factors for Milky Way dwarf spheroidal galaxies with velocity-dependent annihilation

We calculate the effective J-factors, which determine the strength of indirect detection signals from dark matter annihilation, for 25 dwarf spheroidal galaxies (dSphs). We consider several well-motivated assumptions for the relative velocity dependence of the dark matter annihilation cross section: σAv: s -wave (velocity independent), p -wave (σ A v∝v 2 ), d-wave (σ A v∝v 4 ), and Sommerfeld-enhancement in the Coulomb limit (σ A v∝1/v). As a result we provide the largest and most updated sample of J-factors for velocity-dependent annihilation models. For each scenario, we use Fermi-LAT gamma-ray data to constrain the annihilation cross section. Due to the assumptions made in our gamma-ray data analysis, our bounds are comparable to previous bounds on both the p-wave and Sommerfeld-enhanced cross sections using dSphs. Finally, our bounds on the d-wave cross section are the first such bounds using indirect detection data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Majorana neutrinos and dark matter from anomaly cancellation

We discuss a simple theory for neutrino masses where the total lepton number is a local gauge symmetry spontaneously broken below the multi-TeV scale. In this context, the neutrino masses are generated through the canonical seesaw mechanism and a Majorana dark matter candidate is predicted from anomaly cancellation. We discuss in great detail the dark matter annihilation channels and find out the upper bound on the symmetry-breaking scale using the cosmological bounds on the relic density. Since in this context the dark matter candidate has suppressed couplings to the Standard Model quarks, one can satisfy the direct detection bounds even if the dark matter mass is close to the electroweak scale. This theory predicts a light pseudo-Nambu-Goldstone boson (the Majoron) associated to the mechanism of neutrino mass. We discuss briefly the properties of the Majoron and the impact of the big bang nucleosynthesis bounds. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Spontaneous symmetry breaking, gauge hierarchy, and electroweak vacuum metastability

The so-called metastability bound asserts that an unnaturally small Higgs mass is a necessary condition for electroweak vacuum metastability, offering a new approach toward solving the hierarchy problem. So far, this result relies on the assumption of a negative Higgs mass parameter, or equivalently, on electroweak spontaneous symmetry breaking. We derive a new, corresponding bound for the case of a positive mass parameter. When the new bound is significantly more restrictive than or comparable to its established counterpart, it may offer an explanation for the sign of the Higgs mass parameter, and thus, spontaneous symmetry breaking itself. New physics at scales O ( 1 – 10 ) TeV can lower these bounds as far as the TeV scale. As an illustration, we consider vacuum stability in the presence of additional TeV-scale fermions with Yukawa couplings to the Higgs, as well as a dimension-six term parametrizing new physics in the UV. This scenario requires new physics that couples strongly to the Higgs, and can potentially be probed at future colliders. Finally, to allow for comparison with concrete mechanisms predicting metastability, we provide the mass-dependent lifetime of the electroweak vacuum for this model. Published by the American Physical Society 2024

Benevedes, Sean (ORCID:000000016390198X)↗

Constraining neutrinophilic mediators at FASER ν , FLArE, and FASER ν 2

High energy collider neutrinos have been observed for the first time by the FASER ν experiment. The detected spectrum of collider neutrinos scattering off nucleons can be used to probe neutrinophilic mediators with GeV-scale masses. We find that constraints on the pseudoscalar (axial vector) neutrinophilic mediator are close to the scalar (vector) case since they have similar cross section in the neutrino massless limit. We perform an analysis on the measured muon spectra at FASER ν , and find that the bounds on the vector mediator from the current FASER ν data are comparable to the existing bounds at m Z ′ ≈ 0.2 GeV . We also study the sensitivities to a neutrinophilic mediator at future Forward Physics Facilities including FLArE and FASER ν 2 by using both the missing transverse momentum and the charge identification information. We find that FLArE and FASER ν 2 can impose stronger bounds on both the scalar and vector neutrinophilic mediators than the existing bounds. The constraints on the scalar mediator can reach 0.08 (0.1) for m ϕ ≲ 1 GeV with (without) muon charge identification at FASER ν 2 . Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Time Evolution of Correlation Functions in Quantum Many-Body Systems

We give rigorous analytical results on the temporal behavior of two-point correlation functions—also known as dynamical response functions or Green’s functions—in closed many-body quantum systems. We show that in a large class of translation-invariant models the correlation functions factorize at late times $\langle$A ( t ) B$\rangle$ β → $\langle$ A$\rangle$ β $\langle$ B$\rangle$ β , thus proving that dissipation emerges out of the unitary dynamics of the system. We also show that for systems with a generic spectrum the fluctuations around this late-time value are bounded by the purity of the thermal ensemble, which generally decays exponentially with system size. For autocorrelation functions we provide an upper bound on the timescale at which they reach the factorized late time value. Remarkably, this bound is only a function of local expectation values and does not increase with system size. We give numerical examples that show that this bound is a good estimate in nonintegrable models, and argue that the timescale that appears can be understood in terms of an emergent fluctuation-dissipation theorem. Our study extends to further classes of two point functions such as the symmetrized ones and the Kubo function that appears in linear response theory, for which we give analogous results.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

First-principles study of the T center in silicon

The T center in silicon is a well-known carbon-based color center that has been recently considered for quantum technology applications. Using first-principles computations, we show that the excited state is formed by a defect-bound exciton made of a localized defect state occupied by an electron to which a hole is bound. The localized state is of strong carbon p character and reminiscent of the localization of the unpaired electron in the ethyl radical molecule. The radiative lifetime for the defect-bound exciton is calculated to be on the order of microseconds, much longer than for other quantum defects such as the nitrogen vacancy center in diamond and in agreement with experiments. The longer lifetime is associated with the small transition dipole moment as a result of the very different nature of the localized and delocalized states forming the defect-bound exciton. Finally, we use first-principles calculations to assess the stability of the T center. Here, we find the T center to be stable against decomposition into simpler defects when keeping the stoichiometry fixed. However, we identify that the T center is easily prone to (de)hydrogenation and so requires very precise annealing conditions (temperature and atmosphere) to be efficiently formed.

36 MATERIALS SCIENCE↗

An ICA-Based HVAC Load Disaggregation Method Using Smart Meter Data

This paper presents an independent component analysis (ICA) based unsupervised-learning method for heat, ventilation, and air-conditioning (HVAC) load disaggregation using row-resolution (i.e., 15 minutes) smart meter data. We first demonstrate that the electricity consumption profiles on mild-temperature days can be used to approximate the base load on hot days. A residual load profile can then be calculated by subtracting the mild-day load profile from the hot-day load profile. The residual load profiles are processed using ICA for HVAC load extraction. An optimization-based algorithm is proposed for post-adjustment of the ICA results, considering two bounding factors for enhancing the robustness of the ICA algorithm. First, we use the hourly HVAC energy bounds computed from the relationship between HVAC load and temperature to remove unrealistic HVAC load spikes. Second, we exploit the dependency between the daily nocturnal and diurnal loads extracted from historical meter data to smooth the base load profile. Pecan Street data with sub-metered HVAC data were used to test and verify the proposed methods. Simulation results demonstrated that the proposed method is computationally efficient and robust across multiple customers.

Kim, Hyeonjin↗