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DOE OSTI2022

Leptonic cascade decays of a heavy Higgs boson through vectorlike leptons at the LHC

We demonstrate the potential of fully leptonic cascade decays of a heavy neutral Higgs boson through vectorlike leptons as a simultaneous probe for extended Higgs sectors and extra matter particles at the LHC. The processes we explore are unique in that their event topologies lead to di-boson-like leptonic final states with a lepton pair which does not reconstruct the mass of a gauge boson. By recasting existing $2\ell$ + $E^{\text{miss}}_{R}$ and $3/4\ell$ searches channels using run2 data from the LHC we obtain model independent bounds on the masses of heavy scalars and vectorlike leptons and use these results to explore future prospects at the HL-LHC. Our results can be directly applied to any kind of new physics scenarios sharing the final states and the event topology. For concreteness, we apply our results to a benchmark scenario: a two Higgs doublet model type-II augmented with vectorlike leptons. Remarkably, even with current data the sensitivity of our analysis shows a reach for masses of a heavy neutral Higgs and vectorlike leptons up to 2 TeV and 1.5 TeV, respectively. Even for low tan β ≳ 1, the analysis retains sensitivity to heavy Higgs masses slightly above 1 TeV. The future sensitivities at the HL-LHC extend the reach for heavy Higgses and new leptons to 2.7 TeV and 2 TeV, respectively.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS2011

Enterprise Reference Library

Introduction: Johnson Space Center (JSC) offers two extensive libraries that contain journals, research literature and electronic resources. Searching capabilities are available to those individuals residing onsite or through a librarian s search. Many individuals have rich collections of references, but no mechanisms to share reference libraries across researchers, projects, or directorates exist. Likewise, information regarding which references are provided to which individuals is not available, resulting in duplicate requests, redundant labor costs and associated copying fees. In addition, this tends to limit collaboration between colleagues and promotes the establishment of individual, unshared silos of information The Integrated Medical Model (IMM) team has utilized a centralized reference management tool during the development, test, and operational phases of this project. The Enterprise Reference Library project expands the capabilities developed for IMM to address the above issues and enhance collaboration across JSC. Method: After significant market analysis for a multi-user reference management tool, no available commercial tool was found to meet this need, so a software program was built around a commercial tool, Reference Manager 12 by The Thomson Corporation. A use case approach guided the requirements development phase. The premise of the design is that individuals use their own reference management software and export to SharePoint when their library is incorporated into the Enterprise Reference Library. This results in a searchable user-specific library application. An accompanying share folder will warehouse the electronic full-text articles, which allows the global user community to access full -text articles. Discussion: An enterprise reference library solution can provide a multidisciplinary collection of full text articles. This approach improves efficiency in obtaining and storing reference material while greatly reducing labor, purchasing and duplication costs. Most importantly, increasing collaboration across research groups provides unprecedented access to information relevant to NASA s mission. Conclusion: This project is an expansion and cost-effective leveraging of the existing JSC centralized library. Adding key word and author search capabilities and an alert function for notifications about new articles, based on users profiles, represent examples of future enhancements.

Bickham, Grandin↗

DOE OSTI2019

Search for new physics in top quark production in dilepton final states in proton-proton collisions at $\sqrt{s} = 13\,\text {TeV}$

A search for new physics in top quark production is performed in proton-proton collisions at $13\,\text {TeV} $ . The data set corresponds to an integrated luminosity of $35.9{\,\text {fb}^{-1}} $ collected in 2016 with the CMS detector. Events with two opposite-sign isolated leptons (electrons or muons), and $\mathrm{b}$ quark jets in the final state are selected. The search is sensitive to new physics in top quark pair production and in single top quark production in association with a $\mathrm{W}$ boson. No significant deviation from the standard model expectation is observed. Results are interpreted in the framework of effective field theory and constraints on the relevant effective couplings are set, one at a time, using a dedicated multivariate analysis. This analysis differs from previous searches for new physics in the top quark sector by explicitly separating $\mathrm{t}\mathrm{W}$ from $\mathrm{t}{\bar{\mathrm{t}}}$ events and exploiting the specific sensitivity of the $\mathrm{t}\mathrm{W}$ process to new physics.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

NASA NTRS2004

The Lewice Console

Lewice (LEWis ICE accretion program) is software used by literally hundreds of users in the aeronautics community for predicting ice shapes, collections efficiencies, and anti-icing heat requirements for aircraft. LEWICE performs its analysis in minutes on a desktop PC, allowing the user to run several parameter studies for design purposes. The ice shape predictions have been used to assess performance degradation both as an input to a CFD program or experimentally in flight or in a wind tunnel. This information is important to ensure an airplane s safe passage through an icing cloud. Currently, Lewice runs as a DOS program that accepts many different inputs such as cloud conditions, wing shapes, and thermal deicing inputs. Usually, such experimental data is stored in spreadsheets. However, Lewice inputs are text files; therefore, they must be generated by the user. Lewice s outputs (collection efficiency, ice shapes and thicknesses) are also text files; to plot the data, users must generate a spreadsheet with this output. Because all Lewice J/O is in the form of text files, using Lewice can be tricky and time-consuming. Our goal was to improve Lewice s usability by creating a user interface that would automatically generate Lewice input from a spreadsheet and automatically put Lewice output into spreadsheets with charts. Additionally, this user interface would automatically convert units (as Lewice only accepts input in certain units) and offer several output options. I call this program the Lewice Console. The Lewice Console is an easy to use interface for Lewice written in Visual Basic. It allows users to run Lewice given a spreadsheet listing experimental conditions. It automatically generates the input to Lewice, does necessary unit conversions, runs Lewice, and produces a spreadsheet with charts plotting the data. It allows users to import data from previously generated Lewice inputs into a spreadsheet. It also allows users to batch run Lewice on several different inputs to automatically generate multiple output spreadsheets. You can also generate plots of actual data vs. experimental data. These capabilities are just the beginning for the Lewice Console. Lewice is capable of running a full deicing experiment given a geometry and heating apparatus information. However, users find it difficult to run such experiments due to the number of inputs and the difficult input file format. The Lewice Console would simplify experiment generation by allowing the user to interactively draw a geometry, place heating apparatus, and specify information about each part. The input to Lewice would be automatically generated from the experiment the user draws on the screen. The Lewice Console would simplify the experiment building process. Currently, Lewice runs as a DOS program that accepts many different inputs such as

Armstrong, Aaron E.↗

NASA NTRSDate not supplied

A Hybrid Approach to Labeling Datasets in Earth Science Publications

NASA Data Centers provide the public with thousands of datasets that result in published papers, reports, and conference proceedings. Collecting accurate metrics on usage of these datasets is key to connecting different areas of knowledge and evaluating the datasets’ impact. While most of the datasets have Digital Object Identifiers (DOIs) assigned, most publications do not cite them hampering the automated search of these publications. Instead, articles mention attributes like organization, instrument, mission, variable, or a publication describing the dataset. Often only domain experts can deduce the dataset that was used in the publication text. The lack of a citation slows the spread of information and reduces the research’s impact. With thousands of papers produced each year, an automated means of labeling datasets is critical. This paper explores a hybrid approach of heuristics and a Natural Language Processing (NLP) Named Entity Recognition (NER) model to find and label the datasets used within Earth Science papers. Heuristics are used to produce the labelled sentences and any potential dataset candidates that can be derived from a sentence. The heuristic labels the sentences with the names of mission, instrument, re-analysis models, and science keywords taken from the Global Change Master Directory (GCMD) ontology. Additionally, it uses those labels to generate the dataset citation candidates. If the mission, instrument, and variable are sufficient to create the citation for the dataset the citation and the label the domain expert reviews the output without going through the NLP model. If the extracted label is not sufficient to label the dataset on its own, the sentence and its associated dataset labels will be inputted into the NER model. The model outputs the labeled sentence and the potential dataset candidates with their associated probabilities. The domain expert then reviews the NER model’s output and the correct labels are determined. The newly labelled papers can then be used as additional training data. This creates an iterative process for the approach to continuously improve. Because all the possible mentions are gathered by the model, the domain expert can quickly and easily label the papers resulting in large time savings.

Jacob Atkins↗

NASA NTRS2006

User Interactive Software for Analysis of Human Physiological Data

Ambulatory physiological monitoring has been used to study human health and performance in space and in a variety of Earth-based environments (e.g., military aircraft, armored vehicles, small groups in isolation, and patients). Large, multi-channel data files are typically recorded in these environments, and these files often require the removal of contaminated data prior to processing and analyses. Physiological data processing can now be performed with user-friendly, interactive software developed by the Ames Psychophysiology Research Laboratory. This software, which runs on a Windows platform, contains various signal-processing routines for both time- and frequency- domain data analyses (e.g., peak detection, differentiation and integration, digital filtering, adaptive thresholds, Fast Fourier Transform power spectrum, auto-correlation, etc.). Data acquired with any ambulatory monitoring system that provides text or binary file format are easily imported to the processing software. The application provides a graphical user interface where one can manually select and correct data artifacts utilizing linear and zero interpolation and adding trigger points for missed peaks. Block and moving average routines are also provided for data reduction. Processed data in numeric and graphic format can be exported to Excel. This software, PostProc (for post-processing) requires the Dadisp engineering spreadsheet (DSP Development Corp), or equivalent, for implementation. Specific processing routines were written for electrocardiography, electroencephalography, electromyography, blood pressure, skin conductance level, impedance cardiography (cardiac output, stroke volume, thoracic fluid volume), temperature, and respiration

Cowings, Patricia S.↗

DOE OSTI2019

Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA

Background Adverse Drug Reactions (ADRs) are of great public health concern. FDA-approved drug labeling summarizes ADRs of a drug product mainly in three sections, i.e., Boxed Warning (BW), Warnings and Precautions (WP), and Adverse Reactions (AR), where the severity of ADRs are intended to decrease in the order of BW > WP > AR. Several reported studies have extracted ADRs from labeling documents, but most, if not all, did not discriminate the severity of the ADRs by the different labeling sections. Such a practice could overstate or underestimate the impact of certain ADRs to the public health. In this study, we applied the Medical Dictionary for Regulatory Activities (MedDRA) to drug labeling and systematically analyzed and compared the ADRs from the three labeling sections with a specific emphasis on analyzing serious ADRs presented in BW, which is of most drug safety concern. Results This study investigated New Drug Application (NDA) labeling documents for 1164 single-ingredient drugs using Oracle Text search to extract MedDRA terms. We found that only a small portion of MedDRA Preferred Terms (PTs), 3819 out of 21,920 or 17.42%, were observed in a whole set of documents. In detail, 466/3819 (12.0%) PTs were in BW, 2023/3819 (53.0%) were in WP, and 2961/3819 (77.5%) were in AR sections. We also found a higher overlap of top 20 occurring BW PTs with WP sections compared to AR sections. Within the MedDRA System Organ Class levels, serious ADRs (sADRs) from BW were prevalent in Nervous System disorders and Vascular disorders. A Hierarchical Cluster Analysis (HCA) revealed that drugs within the same therapeutic category shared the same ADR patterns in BW (e.g., nervous system drug class is highly associated with drug abuse terms such as dependence, substance abuse, and respiratory depression). Conclusions This study demonstrated that combining MedDRA standard terminologies with data mining techniques facilitated computer-aided ADR analysis of drug labeling. We also highlighted the importance of labeling sections that differ in seriousness and application in drug safety. Using sADRs primarily related to BW sections, we illustrated a prototype approach for computer-aided ADR monitoring and studies which can be applied to other public health documents.

59 BASIC BIOLOGICAL SCIENCES↗

DOE OSTI2022

MVP-CTL Fellowship for Suicide Intervention (CRADA Final Report)

Research conducted with Crisis Text Line (CTL) served as an important stepping stone in the group’s ongoing work of developing natural language processing (NLP) methodologies to discover indicators of suicide factors in the U.S. veteran population. With rising cases of suicide, detecting risk factors among veterans is of growing concern. Socio-economic factors are often under-reported along structured medical variables, and extracting information through NLP methods may improve the sensitivity of suicide prediction models. The research explored through the CTL collaboration provided insights on suicide crisis detection and de-escalation, experience in applying scalable data analysis on real world datasets, contributions to study designs for detecting rare-event and produced transferable methods applicable to the domain of veteran suicide mitigation. Tools developed during this research directly benefits ongoing work on the Million Veteran Project (MVP) collaboration with the Department of Veteran Affairs (VA).

99 GENERAL AND MISCELLANEOUS↗

DOE OSTI2018

Investigating the interaction between MED5 and CDK8 in Arabidopsis

Plant metabolic networks are precisely regulated by the spatial and temporal expression of suites of genes. Among the various transcription (co)factors, a multi‐protein complex, Mediator has been identified as a hub for transcription regulation. The core Mediator complex, comprising the head, middle and tail domains, functions as a bridge between transcription factors and basal transcription machinery, whereas the CDK8 kinase module plays a repressive regulatory role. It is still unclear, however, how the kinase module represses target genes especially in planta . Using a forward genetic screen, our lab determined that MED5, an Arabidopsis Mediator tail subunit, is required for maintaining phenylpropanoid homeostasis. A semi‐dominant mutant ( ref4‐3 ) characterized by a single amino acid substitution in MED5a (G383S) was isolated as a strong suppressor of phenylpropanoid pathway, indicated by decreased soluble phenylpropanoid metabolite accumulation, reduced lignin content and dwarfism. In contrast, knocking out MED5a and MED5b ( med5a/5b ) results in the accumulation of increased levels of phenylpropanoid pathway derivatives. Considering that the CDK8 kinase module is a repressive module in Mediator, we tested the hypothesis that Arabidopsis MED5 represses phenylpropanoid pathway by interacting with CDK8. To test this hypothesis, CDK8 knockout lines ( cdk8‐1 ) were crossed with ref4‐3 , and the phenylpropanoid content of the resulting double mutants was evaluated. In ref4‐3 cdk8‐1 plants, the concentration of sinapate esters and total lignin content are as low as they are in ref4‐3 , yet the growth defect in ref4‐3 is largely rescued. To further determine the genes targeted by MED5 and CDK8 in maintaining proper plant growth, we performed an RNA‐seq analysis which showed that a majority of the genes involved in salicylic acid (SA) biosynthesis and signaling are up‐regulated in ref4‐3 compared to wild type and ref4‐3 cdk8‐1 . Consistent with this observation, both free and total SA, both of which have been previously implicated in dwarfing in lignin‐modified plants, are accumulated to elevated levels in ref4‐3 but not in wild type and ref4‐3 cdk8‐1 . Nevertheless, blocking SA biosynthesis is not sufficient to restore the growth deficiency of ref4‐3 , suggesting that the hyperaccumulation of SA is more likely to be an effect rather than a cause for its dwarf phenotype. At the molecular level, to elucidate how ref4‐3 regulates downstream gene targets in either a CDK8‐dependent manner, we performed RNA polymerase II (Pol II) ChIP‐seq analysis in wild type, ref4‐3 , cdk8‐1 and ref4‐3 cdk8‐1 . The Pol II ChIP‐seq data may provide additional information for us to identify the genes that are causative for the dwarfism of ref4‐3 . Taken together, this study identifies the genetic interaction between MED5 and CDK8 in Arabidopsis, which enhances our understanding in the function of Mediator in plant metabolism and its role in lignin‐modification‐induced dwarfism. Support or Funding Information Department of Energy; Global Climate and Energy Project This abstract is from the Experimental Biology 2018 Meeting. There is no full text article associated with this abstract published in The FASEB Journal .

Mao, Xiangying↗

DOE OSTI2018

Comprehensive High Throughput One‐Pot Analysis of Glycoproteins through Tool for Rapid Analysis of Glycopeptide by Permethylation (TRAP) Method.

Glycoproteins plays key roles in various cellular functions such as protein folding, protein targeting, receptor function, cell–cell recognition, protein stability, signaling, and other cellular functions. Currently a comprehensive and universal tool for the automated analysis of glycopeptides through their tandem mass spectrometry and data processing is a tedious process. We recently developed a method, Tool for Rapid Analysis of glycopeptide by Permethylation (TRAP), that simplifies glycoprotein analysis by integrating glycan sequencing and glycopeptide analysis in a single experiment. We employed this approach for the detailed analysis of glycosidic linkages, composition, glycan sequencing, glycosylation site mapping and sequencing of peptide moiety of glycopeptides of glycoproteins from both prokaryotes and eukaryotes. Here we are presenting an easy to use, robust, suitable for large as well as small sample sets and also cost‐effective glycoprotein analysis tool through TRAP approach. A permethylation protocol which can be automated and suitable for reliable permethylation of glycopeptides from the protease digest of glycoproteins was developed. Initial studies on glycopeptides from a model glycoprotein bovine RNAse B indicates that improved sensitivity and throughput of permethylation reactions can be achieved in conducting the reaction in microscale. This approach would enable convenient, rapid, and reliable high‐throughput screening of protein glycosylation and can be employed as a cost‐effective kit for glycosylated biomarker discoveries. In order to improvise the comprehensive glycosylation analysis and throughput, we have also developed an LC‐MS/MS platform for the analysis of glycopeptides processed through TRAP. We have conducted the analysis of standard glycoproteins such as bovine RNase B, human transferrin, and bovine fetuin and our preliminary results indicate that TRAP hyphened with LC‐MS/MS enables characterization of isomers of each glycoform at each glycosylation sites of complex glycoprotein mixtures. Support or Funding Information This research was supported by the National Institutes of Health (NIH) funded research, Grant R21GM122633; resource for biomedical glycomics, Grant P41GM103490; instrument grant, Grant S10OD018530; and U.S. Department of Energy grant, Grant DE‐SC0015662, to the Complex Carbohydrate Research Center. This abstract is from the Experimental Biology 2018 Meeting. There is no full text article associated with this abstract published in The FASEB Journal .

Shajahan, Asif↗

NASA NTRS1998

Solar Flare Physics

We have continued our previous efforts in studies of fourier imaging methods applied to hard X-ray flares. We have performed physical and theoretical analysis of rotating collimator grids submitted to GSFC(Goddard Space Flight Center) for the High Energy Solar Spectroscopic Imager (HESSI). We have produced simulation algorithms which are currently being used to test imaging software and hardware for HESSI. We have developed Maximum-Entropy, Maximum-Likelihood, and "CLEAN" methods for reconstructing HESSI images from count-rate profiles. This work is expected to continue through the launch of HESSI in July, 2000. Section 1 shows a poster presentation "Image Reconstruction from HESSI Photon Lists" at the Solar Physics Division Meeting, June 1998; Section 2 shows the text and viewgraphs prepared for "Imaging Simulations" at HESSI's Preliminary Design Review on July 30, 1998.

Schmahl, Edward J.↗

DOE OSTI2016

MAMA User Guide v2.0.1

Morphological signatures of bulk SNM materials have significant promise, but these potential signatures are not fully utilized. This document describes software tools, collectively called the MAMA (Morphological Analysis for Material Attribution) software that can help provide robust and accurate quantification of morphological features in bulk material microscopy images (Optical, SEM). Although many of the specific tools are not unique to Mama, the software package has been designed specifically for nuclear material morphological analysis, and is at a point where it can be easily adapted (by Los Alamos or by collaborators) in response to new, different, or changing forensics needs. The current release of the MAMA software only includes the image quantification, descriptions, and annotation functionality. Only limited information on a sample, its pedigree, and its chemistry are recorded inside this part of the software. This was decision based on initial feedback and the fact that there are several analytical chemistry databases being developed within the community. Currently MAMA is a standalone program that can export quantification results in a basic text format that can be imported into other programs such as Excel and Access. There is also a basic report generating feature that produces HTML formatted pages of the same information. We will be working with collaborators to provide better integration of MAMA into their particular systems, databases and workflows.

97 MATHEMATICS AND COMPUTING↗

NASA NTRS2019

Simplifying NASA Earth Science Data and Information Access Through Natural Language Processing Based Data Analysis and Visualization

NASA Earth science data collected from satellites, model assimilation, airborne missions, and field campaigns, are large, complex and evolving. Such characteristics pose great challenges for end users (e.g., Earth science and applied science users, students, citizen scientists), particularly for those who are unfamiliar with NASA's EOSDIS and thus unable to access and utilize datasets effectively. For example, a novice user may simply ask: what is the total rainfall for a flooding event in my county yesterday? For an experienced user (e.g., algorithm developer), a question can be: how did my rainfall product perform, compared to ground observations, during a flooding event? Nonetheless, with rapid information technology development such as natural language processing, it is possible to develop simplified Web interfaces and back-end processing components to handle such questions and deliver answers in terms of text, data, or graphic results directly to users.In this presentation, we describe the main challenges for end users with different levels of expertise in accessing and utilizing NASA Earth science data. Surveys reveal that most non-professional users normally do not want to download and handle raw data as well as conduct heavy-duty data processing tasks. Often they just want some simple graphics or data for various purposes. To them, simple and intuitive user interfaces are sufficient because complicated ones can be difficult and time-consuming to learn. Professionals also want such interfaces to answer many questions from datasets. One solution is to develop a natural language based search box like Google and the search results can be text, data, graphics and more. Now the challenge is, with natural language processing, can we design a system to process a scientific question typed in by a user? In this presentation, we describe our plan for such a prototype. The workflow is: 1) extract needed information (e.g., variables, spatial and temporal information, processing methods, etc.) from the input, 2) process the data in the backend, and 3) deliver the results (data or graphics) to the user.

Liu, Zhong↗

NASA NTRSDate not supplied

Intense Equatorial Electrojet and Counter Electrojet caused by the 15 January 2022 Tonga Volcanic Eruption: Space and Ground-based Observations

Abstract Text: We present space and ground-based multi-instrument observations demonstrating the impact of the 2022 Tonga volcanic eruption on dayside equatorial electrodynamics. A strong counter electrojet (CEJ) was observed by Swarm and ground-based magnetometers on 15 January after the Tonga eruption and during the recovery phase of a moderate geomagnetic storm. Swarm also observed an enhanced equatorial electrojet (EEJ) preceding the CEJ in the previous orbit. The observed EEJ and CEJ exhibited complex spatiotemporal variations. We combine them with the Ionospheric Connection Explorer (ICON) neutral wind measurements to disentangle the potential mechanisms. Our analysis indicates that the geomagnetic storm had minimal impact; instead, a large-scale atmospheric disturbance propagating eastward from the Tonga eruption site was the most likely driver for the observed intensification and directional reversal of the equatorial electrojet. The CEJ was associated with strong eastward zonal winds in the E-region ionosphere, as a direct response to the lower atmosphere forcing. Plain-Language Summary: The Earth's E-region ionosphere (~100-150 km altitude) consists of both ionized and neutral gasses, and the two components are coupled through ion-neutral collisions. The state of this region is closely influenced by neutral atmospheric activities from the lower atmosphere and the variability of the solar drivers. On 15 January 2022, the Tonga volcano had a massive eruption and injected an enormous amount of mass and energy into the atmosphere causing disturbances in the E-region ionosphere or even higher. There was also a moderate geomagnetic storm that started one day before the eruption and ended days after. These conditions offer a unique opportunity to understand the different roles they play in controlling the ionosphere. Coordinated observations including the atmosphere, ionosphere and magnetosphere were made from both space and on the ground during this event. We analyzed the magnetic field and neutral wind data and found that a large-scale atmospheric disturbance generated by the volcano eruption was responsible for the observed directional reversal of the dayside equatorial electric field and electric current.

Guan Le↗

DOE OSTI2020

Oscillating scalar fields and the Hubble tension: A resolution with novel signatures

Here, we present a detailed investigation of a subdominant oscillating scalar field [“early dark energy” (EDE)] in the context of resolving the Hubble tension. Consistent with earlier work, but without relying on fluid approximations, we find that a scalar field frozen due to Hubble friction until log 10 ($z_c$) ~ 3.5, reaching $ρ_{\text{EDE}}(z_c)/ρ_{\text{tot}}$ ~ 10 % and diluting faster than matter afterwards, can bring cosmic microwave background (CMB), baryonic acoustic oscillations, supernovae luminosity distances, and the late-time estimate of the Hubble constant from the SH0ES Collaboration into agreement. A scalar field potential that scales as $V (\phi) \propto \phi ^{2n}$ with 2 ≲ $\textit{n}$ ≲ 3.4 around the minimum is preferred at the 68% confidence level, and the Planck polarization places additional constraints on the dynamics of perturbations in the scalar field. In particular, the data prefer a potential that flattens at large field displacements. A Markov-chain Monte Carlo analysis of mock data shows that the next-generation CMB observations (i.e., CMB-S4) can unambiguously detect the presence of the EDE at a very high significance. This projected sensitivity to the EDE dynamics is mainly driven by improved measurements of the E-mode polarization. We also explore new observational signatures of EDE scalar field dynamics: (i) We find that depending on the strength of the tensor-to-scalar ratio, the presence of the EDE might imply the existence of isocurvature perturbations in the CMB. (ii) We show that a strikingly rapid, scale-dependent growth of EDE field perturbations can result from parametric resonance driven by the anharmonic oscillating field for $\textit{n}$ ≈ 2. This instability and ensuing potentially nonlinear, spatially inhomogeneous, dynamics may provide unique signatures of this scenario.

79 ASTRONOMY AND ASTROPHYSICS↗

DOE OSTI2024

Dataset for scientific paper "Simulated plant‑mediated oxygen input has strong impacts on fine‑scale porewater biogeochemistry and weak impacts on integrated methane fluxes in coastal wetlands", a modeling study based on field observation at the tidal salt marshes of the Parker River Estuary, Massachusetts, United States

This dataset is the raw and processed data for the paper "Simulated plant ‑ mediated oxygen input has strong impacts on fine ‑ scale porewater biogeochemistry and weak impacts on integrated methane fluxes in coastal wetlands". This study investigated how plant-mediated oxygen input affects subsurface biogeochemical reactions of organic carbon degradation and the resulting methane emissions of coastal wetlands by model simulation. We used the subsurface geochemical simulator PFLOTRAN for the modeling, which produced the simulated changes in porewater chemical substances and methane emissions over 10 days under different scenarios of plant-mediated oxygen input.Specifically, this dataset contains: 1) the input files for PFLOTRAN of all simulation runs conducted in this study. Those files are with an extension of ".in", containing information of the biogeochemical reaction network (stoichiometry, reaction rate, Monod constants, etc), fluid flow rate and oxygen concentration in the fluid which together simulated the plant-mediated oxygen input, the configuration of artificial reactions that simulated the methane fluxes, etc. The PFLOTRAN input files are text files, which can be opened by NotePad, but running these input files will require proper installation of PFLOTRAN (instruction: https://documentation.pflotran.org/user_guide/how_to/installation/installation.html). 2) the raw and processed model output from PFLOTRAN of all simulation runs, and 3) the python scripts used to process the raw model output, including random allocation of root cells, converting raw data into organized formats, calculating the methane fluxes based on the model output, data visualization, etc. The raw and processed model output from PFLOTRAN are in .spydata format, which can be viewed with Python. and 3) the python scripts for data processing and analysis are programming scripts, which can be opened with Python.This modeling work, in particular the model parameterization of root density and initial conditions of porewater concentrations of biogeochemical substances, was based on field measurements at the salt marsh of the Upper Parker River Estuary, Massachusetts, United States.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2020

Effective viscosities in a hydrodynamically expanding boost-invariant QCD plasma

Background: The near-equilibrium properties of a QCD plasma can be encoded into transport coefficients such as bulk and shear viscosity. In QCD, the ratio of these transport coefficients to entropy density, ζ/$\textit{s}$ and η/$\textit{s}$, depends nontrivially on the plasma's temperature. This is unlike in conformal systems where they take constant values such as η/$\textit{s}$ = 1/(4π). Purpose: In this work, we show that in a (0 + 1)D boost-invariant fluid with no transverse expansion, a temperature-dependent ζ/$\textit{s(T)}$ or η/$\textit{s(T)}$ can be described by an equivalent effective viscosity $\langleζ/s\rangle_{\text{eff}}$ or $\langleη/s\rangle_{\text{eff}}$. This effective viscosity combines the actual temperature-dependent ζ/$\textit{s(T)}$ or η/$\textit{s(T)}$ with the temperature profile of the fluid. Further, we extend the concept of effective viscosity in systems with transverse expansion and discuss how effective viscosities can be used to identify families of ζ/$\textit{s(T)}$ and η /$\textit{s(T)}$ that lead to similar hydrodynamic evolution. Methods: The Navier-Stokes relativistic hydrodynamic equations are used to provide a first definition of effective viscosity, in (0 + 1)D and (1 + 1)D. In the (0 + 1)D case, the analysis is extended to Israel-Stewart-type second-order hydrodynamics to clarify the effect of higher-order hydrodynamics corrections on the effective viscosity. Results: In a boost-invariant fluid with no transverse expansion [(0 + 1)D], the effective viscosity is expressed as a simple integral of ζ/$\textit{s(T)}$ or η/$\textit{s(T)}$ over temperature, with a weight determined by the speed of sound of the fluid. The result is general for any equation of state with a moderate temperature dependence of the speed of sound, including the QCD equation of state. This definition of effective viscosity can be used to identify infinite families of ζ/$\textit{s(T)}$ or η/$\textit{s(T)}$ that produce essentially indistinguishable temperature profiles. In a boost-invariant cylindrical system [(1 + 1)D], a similar definition of effective viscosity is obtained in terms of characteristic trajectories in time and transverse direction. This leads to an infinite number of constraints on an infinite functional space for ζ/$\textit{s(T)}$ and η/$\textit{s(T)}$. Realistic examples are presented by using a finite number of constraints on a finite functional space. Conclusions: The definition of effective viscosity in a (0 + 1)D system clarifies how infinite families of ζ/$\textit{s(T)}$ and η/$\textit{s(T)}$ can result in nearly identical hydrodynamic temperature profiles. By extending the study to a boost-invariant cylindrical [(1 + 1)D] fluid, we identify an approximate but more general definition of effective viscosity that highlights the potential and limits of the concept of effective viscosity in fluids with limited symmetries.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

DOE OSTI2026

AstraAI v1

AstraAI is an open-source, structure-aware AI coding agent designed for large scientific and DOE-HPC codebases such as AMReX-based applications. Unlike general-purpose coding assistants, AstraAI combines retrieval-augmented generation (RAG) with compiler-level Abstract Syntax Tree (AST) analysis to perform precise, scope-constrained code modifications. It identifies exact function spans, enforces locality of edits, and maintains cross-file invariants, enabling deterministic and build-safe transformations in complex C++/GPU environments. AstraAI is intended for developers working on large, evolving HPC frameworks where correctness, reproducibility, and structural integrity are critical. Typical use cases include modifying physics kernels, updating GPU device lambdas, and performing multi-file refactors without breaking compilation or runtime semantics. Compared to conventional LLM-based coding agents - even those with repository access - AstraAI provides structural guarantees rather than free-form text patches. It minimizes unintended diffs, prevents scope drift, preserves formatting and build stability, and reduces structural hallucinations. By integrating compiler tooling directly into the generation loop, AstraAI transforms AI-assisted coding from probabilistic text editing into deterministic, structure-preserving program transformation suitable for mission-critical scientific software.

Natarajan, Mahesh [Lawrence Berkeley National Labo↗