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At least 685 records · Page 38

Probing interspecies metabolic interactions within a synthetic binary microbiome using genome-scale modeling

Metabolic interactions within a microbial community play a key role in determining the structure, function, and composition of the community. However, due to the complexity and intractability of natural microbiomes, limited knowledge is available on interspecies interactions within a community. In this work, using a binary synthetic microbiome, a methanotroph-photoautotroph (M-P) coculture, as the model system, we examined different genome-scale metabolic modeling (GEM) approaches to gain a better understanding of the metabolic interactions within the coculture, how they contribute to the enhanced growth observed in the coculture, and how they evolve over time. Using batch growth data of the model M-P coculture, we compared three GEM approaches for microbial communities. Two of the methods are existing approaches: SteadyCom, a steady state GEM, and dynamic flux balance analysis (DFBA) Lab, a dynamic GEM. We also proposed an improved dynamic GEM approach, DynamiCom, for the M-P coculture. SteadyCom can predict the metabolic interactions within the coculture but not their dynamic evolutions; DFBA Lab can predict the dynamics of the coculture but cannot identify interspecies interactions. DynamiCom was able to identify the cross-fed metabolite within the coculture, as well as predict the evolution of the interspecies interactions over time. A new dynamic GEM approach, DynamiCom, was developed for a model M-P coculture. Constrained by the predictions from a validated kinetic model, DynamiCom consistently predicted the top metabolites being exchanged in the M-P coculture, as well as the establishment of the mutualistic N-exchange between the methanotroph and cyanobacteria. The interspecies interactions and their dynamic evolution predicted by DynamiCom are supported by ample evidence in the literature on methanotroph, cyanobacteria, and other cyanobacteria-heterotroph cocultures.

59 BASIC BIOLOGICAL SCIENCES↗

Report on High Energy Arcing Fault Experiments: Experimental Results from Low-Voltage Switchgear Enclosures

This report documents an experimental program designed to investigate High Energy Arcing Fault (HEAF) phenomena for low-voltage metal enclosed switchgear containing aluminum conductors. This report covers full-scale laboratory experiments using representative nuclear power plant (NPP) three-phase electrical equipment. Electrical, thermal, and pressure data were recorded for each experiment and documented in this report. This report covers experiments performed on two low-voltage switchgear units with each unit consisting of two vertical sections. The data collected supports characterization of the low-voltage HEAF hazard and these results will be used to support potential improvements in fire probabilistic risk assessment (PRA) methods. The experiments were performed at KEMA Labs located in Chalfont, Pennsylvania. The experimental design, setup, and execution were completed by staff from the NRC, the National Institute of Standards and Technology (NIST), Sandia National Laboratories (SNL) and KEMA. In addition, representatives from the Electric Power Research Institute (EPRI) observed some of the experimental setup and execution. The HEAF experiments were performed between August 26 and Augsut 29, 2019 on nearidentical Westinghouse Type DS low-voltage metal-enclosed indoor switchgear. The threephase arcing fault was initiated on the aluminum main bus or in select cases on the copper bus stabs near the breaker. These experiments used either nominal 480 volts AC or 600 volts AC. Durations of the experiments ranged from approximately 0.4 s to 8.3 s with fault currents ranging from approximately 9.2 kA to 19.3 kA. Real-time electrical operating conditions, including voltage, current and frequency, were measured during the experiments. Heat fluxes and incident energies were measured with plate thermometers, radiometers, and slug calorimeters at various locations around the electrical enclosures. Environmental measurements of breakdown, conductivity and electromagnetics were also taken. The experiments were documented with normal and high-speed videography, infrared imaging and photography. The results, while limited, indicated the difficulty in maintaining and sustaining low-voltage arcs on aluminum components of sufficient duration and at a single point as observed operating experience.

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

Neutron spectral measurements at the BNL NSLS-II synchrotron facility

During the first week of August 2022, Tim Gildea of Los Alamos National Laboratory’s (LANL) RP-SVS group performed a series of neutron spectral measurements at the National Synchrotron Light Source II (NSLS-II) 3GeV facility located at Brookhaven National Lab (BNL)1 . These measurements were conducted under Memorandum Purchase Order (MPO) 413911 with the objective of gaining an accurate understanding of the photoneutron fields generated under normal and selected fault conditions. The spectral data collected during the course of the study was analyzed at LANL and the results form the basis of this report.

61 RADIATION PROTECTION AND DOSIMETRY↗

Development of Laboratory Testbeds Simulating Real-World Greenhouse Gas Emissions [Slides]

In this presentation, I discussed the development of laboratory test beds that simulate field greenhouse gas emissions. Field experiments are used to test new landscape management practices that could reduce greenhouse gas emissions. However, field experiments are very expensive and time consuming. Laboratory experiments are generally more cost efficient and timesaving. There are methods that can be used to make these laboratory tests more closely replicate natural systems for the improvement of agricultural lands used in biofuel and food production. The goal of this project is to develop a laboratory testbed that will mimic field greenhouse gas emissions. To achieve this goal, we used soil cores taken from agricultural and marginal lands, then attached fiberglass wicks to improve the drainage system in the core to simulate a more natural hydraulic system. The combination of using native soils and fiberglass wicks should demonstrate similar greenhouse gas emissions between the lab and the field. Our preliminary results suggest that the carbon dioxide and nitrous oxide flux from the agricultural land site were comparable to the greenhouse soil cores equipped with the drainage wicks. The data suggests that laboratory testbeds can be used to mimic field greenhouse gas emissions if parameters, such as soil water content are in a set range.

54 ENVIRONMENTAL SCIENCES↗

Systems Biology-Based Optimization of Extremely Thermophilic Lignocellulose Conversion to Bioproducts

This was a collaborative project involving researchers at the University of Georgia, North Carolina State University, Sanford‐Burnham‐Prebys Med. Discovery Institute and the University of Rhode Island. The over-arching goal was to demonstrate that non-model microorganisms, specifically extreme thermophiles, can be a strategic metabolic engineering platform for industrial biotechnology. We engineered the most thermophilic lignocellulose-degrading organism known, Caldicellulosiruptor bescii (Cbes) , which grows optimally near 80°C, and the most thermophilic fermentative organism known, Pyrococcus furiosus (Pfu) , which grows optimally at 100°C, to produce several key industrial chemicals. This work leveraged recent breakthrough advances in the development of molecular genetic tools for these organisms, complemented by a deep understanding of its metabolism and physiology gained over the past decade of study in the PIs’ laboratories. We applied the latest metabolic reconstruction and modeling approaches to optimize biomass to product conversion. Bio-processing above 70°C can have important advantages over near-ambient operations. Highly genetically-modified microorganisms usually have a fitness disadvantage and can be easily overtaken in culture when contaminating microbes are present. The high growth temperature of extreme thermophiles precludes growth or survival of virtually any contaminating organism or phage. This reduces operating costs associated with reactor sterilization and maintaining a sterile facility. In addition, at industrial scales, heat production from microbial metabolic activity vastly outweighs heat loss through bioreactor walls such that cooling is required. Extreme thermophiles have the advantage that non-refrigerated cooling water can be used if needed, and heating requirements can be met with low-grade steam typically in excess capacity on plant sites. We assembled a highly interdisciplinary team that brought together all of the expertise for the project to have successful outcomes. This project also built upon and utilized extensive information already available in the PIs’ labs for both Cbes and Pfu to develop models that provide a comprehensive description of these organisms’ physiology and metabolism that were utilized to inform metabolic engineering strategies. The models were validated with experimental data and the results demonstrated that unpretreated lignocellulose has the potential to be converted into value-added industrial chemicals at high loading at bioreactor scale. The data generated from this research were published in twenty-one peer-reviewed papers in international journals with online access.

60 APPLIED LIFE SCIENCES↗

An Integrated Approach to Predicting Ash Deposition and Heat Transfer in Coal-Fired Boilers

The overall goal of this project is to develop via measurements and simulations an advanced online technology to predict, monitor and manage fireside ash deposition in a coal-fired boiler allowing for more efficient operations under a range of load conditions and fuel property variability. With this in place fuel sorting and blending can be done upstream and operations can be optimized to compensate for load and fuel properties. In support of this objective, three experimental campaigns were undertaken during the course of the project to measure ash deposition rates within the boiler at different fuel flow rates and its ash composition variability. Simulations of the experimental conditions representing actual geometry, operational scenarios in terms of air flow rates, coal flow rates as well as coal compositions, heating values, and particle size distributions were also carried out. Deposition rates were predicted using a unique particle kinetic energy and viscosity based ash deposition methodology whose validity was ascertained by comparing against deposition rate measurements for widely varying operating conditions and ash compositions in a lab-scale furnace. With a unique end-to-end combustion modeling methodology established and different simulation scenarios carried out, the results from our computational fluid dynamic (CFD) simulations in conjunction with the plant data summarized in this report were used to refine Microbeam Technology Incorporated’s MTI CSPI-CT Tool to predict and monitor fire-side ash deposition under a range of load conditions and fuel property variability in real time.

01 COAL, LIGNITE, AND PEAT↗

Next Generation Weather Radar (NEXRAD) Setback (4-km)

The Next Generation Weather Radar (NEXRAD) system is a network of doppler radar operated jointly by the National Weather Service (NWS), the Federal Aviation Administration (FAA), and the U.S. Air Force. This dataset represents 4-kilometer setback requirements typically applied to wind energy development. A setback requirement is a minimum distance away that an energy project may be developed. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

Airspace/Defense↗

Ridgelines: Department of Interior Definition

This dataset represents ridgelines as defined by the Department of Interior (DOI): "Areas within 660 feet of the top of the ridgeline, where a ridgeline has at least 150 feet of vertical elevation gain with a minimum average slope of 10 percent between the ridgeline and the base." The dataset was created using the Geomorphons package from the University of Guelph, which can be found here: Geomorphons Package, and the 3DEP 1/3 arc-second digital elevation model. A TIF data file and a PNG map of the data are provided.

Array↗

Wind Turbine Road Setbacks: Ordinances (2022) and Extrapolated Trends, 115 Hub Height 170 Rotor Diameter

This dataset represents wind energy setback requirements from roads based on existing county ordinances as of April 2022. A setback requirement is a minimum distance from a road that an energy project may be developed, and these varied widely across the counties in which they existed. Two versions are provided: one reflecting only the county ordinances and another incorporating extrapolated trends. In the extrapolated version, a median setback equivalent to 1.1 times the turbine tip-height was applied in counties that lacked specific railroad setback regulations. A TIF data file and a PNG map of the data are provided for both versions, showing areas where wind energy is prohibited or permitted across the contiguous United States. The turbine parameters used were a hub-height of 115 meters and a rotor diameter of 170 meters, as obtained from the Annual Technology Baseline (ATB) 2022. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

Array↗

Wind Turbine Railroad Setbacks: Ordinances (2022) and Extrapolated Trends, 115 Hub Height 170 Rotor Diameter

This dataset represents wind energy setback requirements from railroad based on existing county ordinances as of April 2022. A setback requirement is a minimum distance from a railroad that an energy project may be developed, and these varied widely across the counties in which they existed. Two versions are provided: one reflecting only the county ordinances and another incorporating extrapolated trends. In the extrapolated version, a median setback equivalent to 1.1 times the turbine tip-height was applied in counties that lacked specific railroad setback regulations. A TIF data file and a PNG map of the data are provided for both versions, showing areas where wind energy is prohibited or permitted across the contiguous United States. The turbine parameters used were a hub-height of 115 meters and a rotor diameter of 170 meters, as obtained from the Annual Technology Baseline (ATB) 2022. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

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Solar PV Oil and Gas Pipeline Setbacks: Ordinances (2022) and Extrapolated Trends

This dataset represents solar energy setback requirements from oil and gas pipelines. A setback requirement is a minimum distance from a pipeline that an energy project may be developed. As of April 2022, no ordinances were discovered for any counties. Such ordinances are likely to arise as regulations continue to expand. Therefore, this dataset applies a 30-meter setback, sourced from trends in other infrastructure. A TIF data file and a PNG map of the data are provided, showing areas where solar energy is prohibited or permitted across the contiguous United States. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

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Wind Turbine Oil and Gas Pipeline Setbacks: Ordinances (2022) and Extrapolated Trends, 115 Hub Height 170 Rotor Diameter

This dataset represents wind energy setback requirements from oil and gas pipelines. A setback requirement is a minimum distance from a pipeline that an energy project may be developed. As of April 2022, no ordinances were discovered for any counties. Such ordinances are likely to arise as regulations continue to expand. Therefore, this dataset applies a median setback equivalent to 1.1 times the turbine tip-height, sourced from trends in other infrastructure. A TIF data file and a PNG map of the data are provided, showing areas where wind energy is prohibited or permitted across the contiguous United States. The turbine parameters used were a hub-height of 115 meters and a rotor diameter of 170 meters, as obtained from the Annual Technology Baseline (ATB) 2022. For further details and citation, please refer to the publication linked below: Lopez, Anthony, Pavlo Pinchuk, Michael Gleason, Wesley Cole, Trieu Mai, Travis Williams, Owen Roberts, Marie Rivers, Mike Bannister, Sophie-Min Thomson, Gabe Zuckerman, and Brian Sergi. 2024. Solar Photovoltaics and Land-Based Wind Technical Potential and Supply Curves for the Contiguous United States: 2023 Edition. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20-87843.

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Offshore Wind Composite Siting Exclusions Scenarios

This dataset consolidates criteria that restrict the siting of offshore wind energy installations, an update from Zuckerman et al. (2023). All scenarios exclude area from wind energy development due to legal or administrative restrictions (e.g., Marine Protected Areas), existing infrastructure, and technical constraints (e.g., 1,300 m bathymetry limit). A TIF data file and a PNG cartographic map of the data are provided for three scenarios ("Open", "Reference", and "Limited"), showing areas where offshore wind energy is restricted across the contiguous United States. The "Open" scenario only excludes areas with known preclusions for offshore wind deployment. The "Reference" scenario excludes all areas from the "Open" scenario, as well as additional best management practices such as known proposed protected areas, and state waters. The "Limited" scenario excludes all area from the "Reference" scenario. Additionally, it has more stringent siting criteria such as larger setbacks from shore and infrastructure, as well as shallower depth limits on floating technology. For further details and citation, please refer to the publication linked below: Zuckerman, Gabriel R., Anthony Lopez, Travis Williams, Rebecca Green, and Grant Buster. 2023. Impacts of Siting Considerations on Offshore Wind Technical Potential in the United States. Golden, CO: National Renewable Energy Laboratory. NREL/TP-6A20- 85088.

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Mercury Speciation via Diffusive Gradients Thin-Films Technology

Objectives: Develop and test various diffusive gradient in thin films (DGT) samplers for mercury - SRNL is developing reactive DGTS (rDGTs). Test chemistry to differentiate methylmercury from total and/or inorganic mercury in environmental samples. Fabricate and test rDGT samplers for deployment. Deploy the rDGTs in variable settings. Mercury is a persistent-bioaccumulative-toxic environmental pollutant. Mercury exists in different species such as elemental, inorganic, and methyl. Mercury speciation determine mercury behavior and toxicity. For example, methylmercury strongly accumulates in biota such as fish resulting in potential human health impacts. DGTs are innovative samplers to measure water concentration by diffusion and capture. Types of Hg DGTs used: Total Hg, Inorganic Hg, and Methyl Hg. Deployment Sites: Upper Three Runs, Lower Three Runs, Steele Creek, East Fork Poplar Creek (SRNL Sites), Horizons Creek, NOA Creek, Bruners Creek (ORNL Sites). DGT concentration estimates closely matched alternative measurements for soluble mercury at each Oak Ridge site - DGTs did not respond to particulate mercury. DGTs provide a representative measure for biota uptake since they are left out longer which allows for an average exposure concentration. DMA-80 provided an efficient and quick analysis. Variability in site location made a difference in Hg species. DGT preparations and sampling wasn't as quick and simple as microcolumn technology. Copper reagent degraded agarose gel - more work and cleaner data are needed to assess speciation in rDGTs. Future Work: Use cross-linked polyacrylamide for the collection layer for a stronger plastic. Make a copper diffusion layer without agarose. Test copper separation in lab using realistic stream conditions such as high organic carbon.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Generalized representative structures for atomistic systems

A new method is presented to generate atomic structures that reproduce the essential characteristics of arbitrary material systems, phases, or ensembles. Previous methods allow one to reproduce the essential characteristics (e.g. the chemical disorder) of a large random alloy within a small crystal structure. The ability to generate small representations of random alloys, along with the restriction to crystal systems, results from using the fixed-lattice cluster correlations to describe structural characteristics. A more general description of the structural characteristics of atomic systems is obtained using complete sets of atomic environment descriptors. These are used within for generating representative atomic structures without restriction to fixed lattices. A general data-driven approach is provided here utilizing the atomic cluster expansion (ACE) basis. The N-body ACE descriptors are a complete set of atomic environment descriptors that span both chemical and spatial degrees of freedom and are used within for describing atomic structures. The generalized representative structure (GRS) method presented within generates small atomic structures that reproduce ACE descriptor distributions corresponding to arbitrary structural and chemical complexity. It is shown that systematically improvable representations of crystalline systems on fixed parent lattices, amorphous materials, liquids, and ensembles of atomic structures may be produced efficiently through optimization algorithms. With the GRS method, we highlight reduced representations of atomistic machine-learning training datasets that contain similar amounts of information and small 40–72 atom representations of liquid phases. The ability to use GRS methodology as a driver for informed novel structure generation is also demonstrated. The advantages over other data-driven methods and state-of-the-art methods restricted to high-symmetry systems are highlighted.

atomic cluster expansion↗

Lost in OCR Translation? Vision-Based Approaches to Robust Document Retrieval

Code for ‘Lost in OCR Translation?’: robust document retrieval under degradation. Compares OCR-based, vision-only, and hybrid pipelines; includes SambaNova LLaMA Vision OCR, Nougat, and ViDoRe baselines. Provides QA data generation, RAG evaluation, and metrics (Levenshtein, nDCG@k, Recall@k, EM/F1) with reproducible scripts. Includes dataset guides

Bhattarai, Manish [Los Alamos National Labs]↗

Real Time Phasor Analytics (RTPA) and RTPA-SCR System Strength Online Tool

This presentation showcases the Real-Time Phasor Analytics (RTPA) framework for monitoring inertia and assessing system strength in power grids. RTPA is an open-source tool designed to standardize access to data from Power Management Units (PMUs) and Phasor Data Concentrators (PDCs). It facilitates real-time connectivity to multiple PDCs in accordance with the IEEE C37.118-2 standard and supports asynchronous data stream integration. Additionally, RTPA can simulate a PDC server streaming C37.118-2 data and provides Python bindings for seamless interaction with the framework, eliminating the need for direct Rust programming.

24 POWER TRANSMISSION AND DISTRIBUTION↗

Sierra/SD – Its2Sierra – User’s Manual – 5.28

Incrementally updated theory documents associated with new software release. The Integrated Tiger Series (ITS) generates a database containing energy deposition data. This data, when stored on an Exodus file, is not typically suitable for analysis within Sierra Mechanics for finite element analysis. The its2sierra tool maps data from the ITS database to the Sierra database. This document provides information on the usage of its2sierra.

97 MATHEMATICS AND COMPUTING↗