Engineering Papers⌕ Search

SEARCH · Engineering Papers

Results for “knowledge engineering”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 685 records · Page 38

Towards the design of nature-inspired materials: Impact of complex pore morphologies via higher-order homogenization

Even though the development of novel materials that mimic nature is widely used in a variety of engineering and scientific fields, the relationship between effective material properties and underlying, often complex pore morphology is still not fully understood. To address this knowledge gap and accelerate the development of novel nature-inspired materials, this paper adopts a higher-order asymptotic homogenization method to numerically investigate the effect of complex micropore morphology on the effective mechanical properties of a porous system. Specifically, we create unique pore morphologies with varying levels of complexity that serve as a more realistic representation of natural materials. Here, we then use the second-order homogenization method to capture the role of pore size, shape, orientation, and distribution on effective properties. By creating different pore morphologies, we systematically studied the relationship between morphology and effective mechanical properties. The results highlight the necessity of higher-order parameters to fully capture the role of realistic pore morphologies on effective mechanical properties and provide a path forward in the design of nature-inspired materials.

36 MATERIALS SCIENCE↗

Transportability of exogenous microbial community correlates with interwell connectivity in deep aquifers

Subsurface resource engineering operations often utilize continuous injection of externally-sourced water into geological reservoirs for formation pressure maintenance, resource recovery or energy/waste storage. Such injected water generally contains naturally occurring microbes. Little is known, however, about how the injectate microbes transport through geological media as a community, how such transportability is affected by injector-producer connectivity, and whether such knowledge can be utilized for flowpath characterization. In this study, we analyzed daily-to-weekly timeseries microbial community data from the injected- and produced-fluids of a ten-month flow test at a deep, well-characterized engineered aquifer. We found that the injectate microbial community was distinct from the indigenous community at the amplicon sequence variant (ASV) level, and that the transportability of injectate community towards a given producer, quantified by an “nASV-Overlap” metric we propose, had strong and significant positive correlation with known injector-producer connectivities at our site. This suggests that the better the connectivity, the higher the probability for more injectate species to flow through the interwell region and arrive at a producer. Because interwell connectivity is an important yet usually unknown parameter in subsurface resource engineering, such correlation in turn points to nASV-Overlap as a useful indicator of interwell connectivity for aquifer characterization and long-term monitoring. Based on our findings, an nASV-Overlap-based microbial tracing approach was developed for characterizing and monitoring the relative connectivities across multiple producers with a given injector. A side-by-side comparison between the new nASV-Overlap approach and traditional artificial tracer methods is presented, and their respective strengths and limitations are discussed.

Deep biosphere↗

Redefining fundamental concepts of transcription initiation in bacteria

Despite enormous progress in understanding the fundamentals of bacterial gene regulation, our knowledge remains limited when compared with the number of bacterial genomes and regulatory systems to be discovered. Derived from a small number of initial studies, classic definitions for concepts of gene regulation have evolved as the number of characterized promoters has increased. Together with discoveries made using new technologies, this knowledge has led to revised generalizations and principles. In this Expert Recommendation, we suggest precise, updated definitions that support a logical, consistent conceptual framework of bacterial gene regulation, focusing on transcription initiation. The resulting concepts can be formalized by ontologies for computational modelling, laying the foundation for improved bioinformatics tools, knowledge-based resources and scientific communication. Furthermore, this work will help researchers construct better predictive models, with different formalisms, that will be useful in engineering, synthetic biology, microbiology and genetics.

59 BASIC BIOLOGICAL SCIENCES↗

Association Mapping of Cell Wall Synthesis Regulatory Genes and Cell Wall Quality in Switchgrass

Inefficient conversion of biomass to biofuels is one of the main barriers for biofuel production from such materials. Approximately half of polysaccharides in biomass remain unused by typical biochemical conversion methods. Conversion efficiency is influenced by the composition and structure of cell walls of biomass. Grasses such as wheat, maize, and rice, as well as dedicated perennial bioenergy crops, like switchgrass, make up ~55% of biomass that can be produced in the United States. Grass cell walls have a different composition and patterning compared with dicotyledonous plants, including the well-studied model plant, Arabidopsis. This project identified genetic determinants of cell wall composition in grasses using both naturally occurring genetic variation of switchgrass and gene network reconstruction and functional assays in rice. In addition, the project linked functional data in rice and other species to switchgrass improvement efforts through curation of the most abundant class of regulators in the switchgrass genome. Characterizing natural diversity of switchgrass for variation in cell wall composition and properties, also known as quality, provides an unbiased avenue for identifying biologically viable diversity in switchgrass cell walls. To characterizing natural diversity, this project generated cell wall composition and enzymatic deconstruction data for ~450 genotypes of the Switchgrass Southern Association Collection (SSAC), a diverse collection composed of 36 switchgrass accessions from the southern U.S. distribution of switchgrass. Comparing these data with other measures of cell wall quality for the same samples demonstrated the complementary nature of the diverse characterization platforms now being used for biomass characterization. Association of the composition data with ~3.2K single nucleotide variant markers identified six significant single nucleotide variant markers co-associated with digestibility and another compositional trait. These markers might be used to select switchgrass genotypes with improved composition in breeding programs for biofuel and forage production. Because the SSAC continues to be characterized by collaborators in the bioenergy community, the data generated will be used to identify additional markers in higher resolution genotyping data to approach identifying the genes and alleles that cause natural variation in switchgrass cell wall quality. For example, these markers can be surveyed in the 2100-member Oklahoma Southern and Northern Lowland switchgrass collections that this project also characterized. An orthogonal approach to biodiversity studies, using comparative functional genomics permits systematic querying of how much regulatory information is likely to be transferable from dicots to grasses and use of accumulated functional genomics resources for better-characterized grass species, such as rice, itself a biomass source in global agriculture and in certain regions. The project generated and tested a number of specific hypotheses regarding cell wall transcription factors and enzymes of grasses. To aid identification of cell wall regulators, the project assembled a novel, highdepth and -quality gene association network using a general linearized model scoring system to combine rice gene network data. Using known or putative orthologs of Arabidopsis cell wall biosynthesis genes and regulators, the project pulled from this network a cell wall sub-network that includes 96 transcription factors. Reverse genetics of a co-ortholog of the Arabidopsis MYB61 transcription factor in rice revealed that this regulatory node has evolved the ability to regulate grass-specific cell wall synthesis enzymes. A transcription factor with such activity has not been previously characterized to our knowledge, representing a major conclusion of this work. Changes in gene expression in a protoplast-based assay demonstrated positive or negative roles in cell wall regulation for eleven other transcription factors from the rice gene network. Eight of fifteen (53%) of these have not previously been examined for this function. Some of these may represent novel grass-diverged cell wall regulators, while others are likely to have this function across angiosperms. A parallel effort of this project to expand knowledge of enzymes that have evolved to function in grass cell wall synthesis, revealed that a grass-diverged enzyme in rice, OsAT 5 , ferulates monolignols that are naturally incorporated into grass cell walls. This finding opens potential natural selection avenues for improving biomass composition for downstream processing by weak base pretreatment. Thus, this project has significantly expanded knowledge of cell wall synthesis and regulation in rice, information that can be used in reverse genetics and synthetic biology approaches to re-engineer cell walls for improved production of biofuel and high-value products. To lay the foundation for translating these results directly for switchgrass improvement, the project employed a comparative phylogenetic analysis of the major group of cell wall transcription factors that have been found to function in cell wall regulation, the R 2 R 3 MYBs. This analysis concluded that known cell wall regulators are largely conserved across switchgrass, rice, maize, poplar, and Arabidopsis. This interpretation is also largely consistent with the gene network analysis described above, though both approaches provide evidence that some co-orthologs of Arabidopsis regulators have diminished or increased in importance based on gene expression patterns. Also, several clades containing dicot cell wall regulators have expanded, consistent with the evolution of new cell wall regulators. This latter result is supported by functional analysis of the R 2 R 3 MYB protein SWAM 1 in a collaboration between this project and the DOE-funded group of Dr. S. Hazen at the University of Massachusettes. The curation of the switchgrass genome through this project provides specific targets for future engineering of switchgrass cell wall regulation and may also facilitate identification of regulators that underlie the molecular markers that are genetically linked to differences in cell wall quality. With the goal of spurring further research and technological developments in lignocellulosic biofuel production, this work has been communicated to the bioenergy and cell wall communities though various presentations and publications. To date, three manuscripts have been published, two others are near to publication, three others are in an advanced state, and two to four more are likely to be written based on analyses still in progress. In addition, project participants have presented thirteen posters and talks at regional, national, and international meetings about aspects of this project. In sum, the work supported by this funding has made and communicated significant progress in identifying the genes that grasses use for cell wall synthesis and regulation, information that will be used by project participants and others to improve the efficiency of conversion of lignocellulosic biomass to biofuels.

09 BIOMASS FUELS↗

Seventy-Five Years of Nuclear Criticality Safety Documents - A Bibliography

A collection of nuclear criticality documents was begun in the 1970s at the University of California’s Lawrence Livermore Laboratory (now Lawrence Livermore National Laboratory). Documents in this bibliography are dated as early as 1940. The early documents described experimental work that was of vital importance to the safe use of fissile materials at nuclear reactors, the facilities for preparing or transporting nuclear fuel, or its eventual storage. The experiments were of direct value to support safe operations with fissile material, but they were also needed for validating early physics data and calculational methods and then for validating computational methods used in criticality safety evaluations. Bibliographic information from the past seventy-five years have been entered into a computerized bibliographic database. The database continues to expand. Publications were issued several decades ago based on the information collected at that time. Our new publication is based on a current “snapshot” of the present status of the database. Contributions of information or corrections to this bibliography will be appreciated.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Regional 3-D Geophysical Characterization of the Nevada National Security Site

We perform a joint inversion of absolute and differential P and S body waves, gravity measurements, and surface wave dispersion curves for the 3-D P- and S-wave velocity structure of the Nevada National Security Site (NNSS) and vicinity. Data from earthquakes, past nuclear tests, and other active source chemical explosive experiments, such as the Source Physics Experiments (SPE), are combined with surface wave phase and group speed measurements from ambient noise, source interferometry, and active source experiments to construct a 3-D velocity model of the site with resolvable structures as fine as 6 km horizontal and 2 km vertically. Results compare favorably with previous studies and expand and extend the knowledge of the 3-D structure of the region.

42 ENGINEERING↗

Remote Sensing System (Engineering Change Proposal (ECP) 2)

The primary technical objective of this CRADA was for Sandia National Laboratories (SNL) and Northrop Grumman Systems Corporation, acting through Northrop Grumman Aerospace Systems (NGAS), to collaborate, as needed, to inform a Remote Sensing System (RSS) development, led by the NGAS CRADA partner, through its System Design Review (SDR) and subsequent Program Design Review (PDR) milestones. More specifically, tasks and deliverables involved SNL and NGAS collaborating in seven broad areas: System Engineering, System Modeling and Simulation, System and Component Design, Assessment and Implementation, System Integration and Testing, Data Path Design and Engineering and Collection Segment Processing Engineering and Implementation. The collaboration between SNL and NGAS has resulted in a benefit to both organizations, and the public/taxpayers, by ensuring that legacy knowledge is not lost to future developments and will be incorporated into ongoing and future U.S. sensor systems.

47 OTHER INSTRUMENTATION↗

Burning Plasma Science: Long Pulse-Materials and Fusion Nuclear Science (Final Project Report)

The series of International Conferences on Fusion Reactor Materials (ICFRM) has been established nearly forty years ago as the major international forum for exchanging and archiving a growing knowledge based on the development of materials for both near and long-term fusion energy systems. The critical role of materials science and engineering in overcoming the technological challenges to making fusion energy a practical reality has been an overarching theme of invited and contributed oral talks as well as the poster session presentations. ICFRM is the premier international forum connecting specialists in the area of development of materials for both near and longer-term fusion energy systems. A central theme is the sharing of new insights, cutting-edge research, and technology in materials science pertaining to the realization of fusion energy. The conference consists of daily overview plenary lectures, invited and contributed oral presentations, and a series of technical poster sessions. In addition to hosted satellite meetings, pre-conference technical tutorials, and stimulating discussions. The 19th International Conference on Fusion Reactor Materials (ICFRM-19) was held in La Jolla, California, U.S.A. during the period October 27 through November 1, 2019. We describe here the conference background, topics, structure, program, schedule and timeline, publications, venue, satellite meetings, short courses and seminars, and finally the budget and expenses.

36 MATERIALS SCIENCE↗

Oxidation Behavior and Property Degradation of Nuclear Graphites

During its multidecade operation in the core of nuclear reactors, graphite components are subjected to aggressive and continuous exposure to a high field of ionizing and neutron irradiation, high temperature, and various types of present and postulated chemical attacks. High density, high crystallinity polygranular synthetic graphite is unique among other materials for its extraordinary capacity of resisting and adapting to the aggression inflicted by high temperature, high energy neutron bombardment and ionizing gamma radiation. But, as a carbonaceous material, even though of very high purity, graphite is reactive towards common oxidizing agents: oxygen, carbon dioxide, water. Safe operation of HTGRs relies, among other aspects, on engineered safeguard systems for efficient and continuous protection of graphite components against oxidation. Graphite oxidation behavior was, and continues to be, an important direction of theoretical and experimental research, engineering analyses, models and simulations, and design and safety regulations. The avalanche of publications, reports, experimental data, computer codes, and regulatory documents related to oxidation behavior of nuclear graphite is now accelerating to new levels, prompted by the increased interest for nuclear energy as a clean, carbon-free energy source. Even though public’s perception of nuclear energy advantages may still be influenced by the memories of past accidents of nuclear reactors from generations II and III, the community of informed scientists and engineers, regulators and statemen knows that generation IV of nuclear reactors is designed at very high safety standards, doubled by great advances of scientific knowledge and technological progress. One of routes of these recent advances is directed at better understanding of graphite oxidation behavior, its relationship with graphite manufacturing and microstructural properties, along with the effects of various environmental factors and process variables. Together, the recent progress in manufacturing, properties characterization, and modeling of intricated physical and chemical processes that concur to the oxidation behavior led to development of powerful simulation codes able to analyze various scenarios of normal operation and hypothetical off-normal events, and thus to clearly specify the allowable parameters envelopes for the designers, constructors, and operators of current and future modular HTGRs. This review begins with an introduction on manufacturing methods, structure, and properties of nuclear graphite, including basic requirements that this specialty graphite type must satisfy for nuclear use. It continues with a chapter on environmental effects on nuclear graphite, where emphasis is placed less on irradiation and much more on oxidation phenomena, their safety implications, and the basic traits of chronic and acute oxidation by air (oxygen) and water (humidity, steam). Particular attention is placed on the three graphite grades of interest for this document (IG-110, NBG-18, PCEA). A chapter on properties degradation induced by oxidation follows, with focus on density, dimensional, and mechanical properties changes. The next chapter is intended as a brief review of various approaches used for modeling of graphite oxidation behavior. It summarizes the progress of oxidation models, from the early attempts to complex computational approaches interfaced with specialized computer codes designed for nuclear reactor simulations. Last, a list is presented of knowledge gaps where more research is needed. A short summary concludes the review.

36 MATERIALS SCIENCE↗

Transverse Rupture Strength of Uranium Dioxide

Uranium dioxide (UO 2 ) fuel is used as fuel in light water reactors (LWRs). While the fuel pellet is technically the first engineering barrier for radionuclide release, pellet fracturing at intermediate- to high-burnup values releases fission gases into the fuel rod plenum [1, 2]. Therefore, the true engineering barrier is the fuel cladding, which performs very well in LWR environments [3]. The extreme temperature gradients generated by fission energy and the low thermal conductivity of UO 2 quickly induce radial cracking in UO 2 during operation [4]. Cracks in the fuel provide opportunities for fuel relocation, increased fission gas release, and pellet-cladding mechanical interaction (PCMI) [5]. The ability to predict and engineer the fracture of UO 2 fuel pellets using modern computational tools is therefore a key engineering goal that has been the focus of ongoing experimental and computational efforts [6, 7]. Accurate predictions of fuel pellet cracking during operation requires knowledge of more complex phenomena, but improved understanding of the fundamental fracture behavior of unirradiated UO 2 is first necessary.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

A review on experimentally observed mechanical and microstructural characteristics of interfaces in multi-material laser powder bed fusion

Additive manufacturing (AM) is a revolutionary technology. One of the key AM categories, metal powder-based fusion processes, has many advantages compared to conventional methods for fabricating structural materials, such as permitting increased geometric complexity. While single material metal powder AM has advanced significantly in the past decade, multi-material AM is gradually attracting more attention owing to the recent breakthrough in multi-material feedstock delivery and the growing interest of fabricating functionally graded components. Multi-material AM offers an alternative route for applications that require location dependent material properties and high geometrical complexity. The AM community has invented several ways to achieve compositional gradients and discrete boundaries in two and three dimensions using mechanical spreading, nozzle-based, electrophotographic, and hybrid techniques. This article reviews the current state of laser powder bed fusion based multi-material AM of metals with focuses on the characteristics of the material interface as well as the properties and performance of the AM built functionally graded materials. We show the common challenges and issues related to material transitions, such as defects, segregation, phase separation, and the efficacy of some potential solutions including material and process optimizations. Additionally, this study evaluates the applicability and limitations of the existing testing standards and methods for measuring mechanical performance of functionally graded materials. Finally, we discuss mechanical testing development opportunities, which can help multi-material AM move towards higher technological maturity. In general, we find that the link between gradient microstructure and mechanical properties is not well understood or studied and suggest several mechanical tests that may better inform this knowledge gap.

42 ENGINEERING↗

Designing alloys with process-mapping AI pre-trained on empirical knowledge

<span style="font-family: Calibri, sans-serif; font-size: 12pt;">Accelerated materials design should match the recent trends in the product development cycles. Materials data analytics can be used to significantly shorten development time of specialized alloys needed for next generation energy applications. However, it faces a challenge of scarce data available for training ML models. Incorporation of the domain knowledge into deep-learning graph structure via fuzzy pre-training and causal process imitation presents a viable approach to developing accurate data-driven models and reliable alloy design tools, with limited datasets. Artificial Intelligence (AI) was used in this study to incorporate such knowledge in the domain-specific computational tool, pyroMind. The tool provides not only novel design ideas but also their interpretation via physics and engineering concepts.</span>

Romanov, Vyacheslav↗

A Technical-Economic Assessment of Brackish Water Treatment for Fossil Power Plant Cooling with Reduced Environmental Impact

The power sector accounts for approximately 40% of freshwater use in the U.S. Reusing non-traditional water resources is critical for alleviating water stress in the western United States. The purpose of this study is to conduct a techno-economic system analysis to evaluate the potential of brackish water treatment for wet cooling towers at existing thermo-electric generating units (EGUs). It aims to address current knowledge gaps in support of non-traditional water resources planning and the electric power industry's water decision- and policy making. An engineering-economic model was developed and combined with DuPont's water application value engine (WAVE) v1.82 to evaluate the viability of retrofitting reverse osmosis-based brackish water treatment systems to individual existing EGUs and then aggregating the unit-level results to the fleet level. In the base case, brackish water treatment can reduce freshwater consumption of electric generation units by 94–100% while increasing the cost of electric generation by approximately 10% and have marginal impacts on the units' parasitic loads. When zero liquid discharge systems are applied to brackish water brine treatment, the cost of electric generation and freshwater consumption savings and energy penalty to the power plant significantly increase. These costs are even higher than dry cooling deployment in lieu of wet cooling towers. The choice of freshwater savings between brackish water desalination and dry cooling deployment depends greatly on how the concentrated brines are managed. Multiple factors must be considered when supporting decision-making in water management and planning in power sectors, which include non-traditional water quantity and quality as well as trade-offs among technical performance, economics, and environmental impacts.

Wu, Zitao↗

Higher-order compositional modeling of three-phase flow in 3D fractured porous media based on cross-flow equilibrium

Numerical simulation of multiphase compositional flow in fractured porous media, when all the species can transfer between the phases, is a real challenge. Despite the broad applications in hydrocarbon reservoir engineering and hydrology, a compositional numerical simulator for three-phase flow in fractured media has not appeared in the literature, to the best of our knowledge. In this work, we present a three-phase fully compositional simulator for fractured media, based on higher-order finite element methods. To achieve computational efficiency, we invoke the cross-flow equilibrium (CFE) concept between discrete fractures and a small neighborhood in the matrix blocks. We adopt the mixed hybrid finite element (MHFE) method to approximate convective Darcy fluxes and the pressure equation. This approach is the most natural choice for flow in fractured media. The mass balance equations are discretized by the discontinuous Galerkin (DG) method, which is perhaps the most efficient approach to capture physical discontinuities in phase properties at the matrix-fracture interfaces and at phase boundaries. In this work, we account for gravity and Fickian diffusion. The modeling of capillary effects is discussed in a separate paper. We present the mathematical framework, using the implicit-pressure-explicit-composition (IMPEC) scheme, which facilitates rigorous thermodynamic stability analyses and the computation of phase behavior effects to account for transfer of species between the phases. A deceptively simple CFL condition is implemented to improve numerical stability and accuracy. We provide six numerical examples at both small and larger scales and in two and three dimensions, to demonstrate powerful features of the formulation.

97 MATHEMATICS AND COMPUTING↗

Direct Current Arc-Flash Hazards of Solar Photovoltaic Systems

An arc-flash is a rapid release of thermal energy, pressure waves, and electromagnetic interference from a high-power electrical system, caused by such events as unintentional shorting or equipment malfunction. Arc-flashes are hazardous to people and equipment. Incident energy (IE) is a means of quantifying the degree of thermal hazard posed by an arc-flash event. The calculated IE value dictates what level of personal protective equipment (PPE) workers are required to wear when servicing equipment. Overly burdensome PPE may increase a worker’s discomfort and decrease dexterity, which could lead to unintentional shorting, while inadequate PPE also comes with increased safety risks. The majority of arc-flash research to date has focused on alternating current (ac) systems. For example, IE calculations and PPE for ac systems are relatively well understood and have been applied across many equipment types and voltages. IE calculation methodologies in ac systems are backed by a wide range of industry tests and are included in Institute of Electrical and Electronics Engineers (IEEE) and National Fire Protection Association (NFPA) standards. However, very little is known about direct current (dc) arc-flash and its hazards. This is a significant knowledge gap, as an increasing number of dc systems are being deployed: solar photovoltaic (PV) plants, battery storage, and electric vehicles and their charging infrastructure. The dc arc-flash hazard publications are rooted primarily in theory, and their IE calculation methods contradict each other. Insufficient knowledge and data are preventing the formation of industry consensus and standards around dc arc-flash hazard assessment. Here, this white paper highlights the current status and research opportunities for assessing arc-flash hazards in dc systems, with a focus on PV plants. The nonlinear current-voltage characteristics of PV modules make them unique in comparison to other linear dc sources, such as batteries. Also, PV equipment has rapidly evolved from 600 Vdc to 1,500 Vdc (in the United States), increasing potential arc-flash hazards. The operating regime of a PV-array within its I-V characteristic curve during an arc-flash event and the sustainability of arc-flash events in a utility-scale PV plant need to be investigated. Arc-flash experiments on a 1-MWdc nameplate capacity utility-owned ground-mount photovoltaic plant suggest that the PV array acts as a constant-current supply with currents near the short-circuit portion of the I-V characteristic curve of the array, with median arc voltage as 1/3 of the rated voltage. Various engineering software packages (CYME7 by EATON, PTW by SKM, ArcFlash™ by EasyPower, ETAP, and so on) have started offering dc arc-flash calculation features to estimate the risk of arc-flash in dc and PV systems. However, they are reliant on the same simplified arc-flash models, which contradict each other due to differences in assumptions such as characteristics of the power source, arc current, voltage and impedance, arc-operating regime, and so on. Physical arc-flash testing and improved physics-based modeling with correct assumptions representing practical scenarios are two methods to improve understanding and quantify the risks associated with dc arc-flash hazards. The results would inform development of a more accurate calculation procedure for IE and proper PPE levels.

14 SOLAR ENERGY↗

EpiK: A Knowledge Base for Epidemiological Modeling and Analytics of Infectious Diseases

Computational epidemiology seeks to develop computational methods to study the distribution and determinants of health-related states or events (including disease), and the application of this study to the control of diseases and other health problems. Recent advances in computing and data sciences have led to the development of innovative modeling environments to support this important goal. The datasets used to drive the dynamic models as well as the data produced by these models presents unique challenges owing to their size, heterogeneity and diversity. These datasets form the basis of effective and easy to use decision support and analytical environments. As a result, it is important to develop scalable data management systems to store, manage and integrate these datasets. In this paper, we develop EpiK —a knowledge base that facilitates the development of decision support and analytical environments to support epidemic science. An important goal is to develop a framework that links the input as well as output datasets to facilitate effective spatio-temporal and social reasoning that is critical in planning and intervention analysis before and during an epidemic. The data management framework links modeling workflow data and its metadata using a controlled vocabulary. The metadata captures information about storage, the mapping between the linked model and the physical layout, and relationships to support services. EpiK is designed to support agent-based modeling and analytics frameworks—aggregate models can be seen as special cases and are thus supported. We use semantic web technologies to create a representation of the datasets that encapsulates both the location and the schema heterogeneity. The choice of RDF as a representation language is motivated by the diversity and growth of the datasets that need to be integrated. A query bank is developed—the queries capture a broad range of questions that can be posed and answered during a typical case study pertaining to disease outbreaks. The queries are constructed using SPARQL Protocol and RDF Query Language (SPARQL) over the EpiK. EpiK can hide schema and location heterogeneity while efficiently supporting queries that span the computational epidemiology modeling pipeline: from model construction to simulation output. As a result, we show that the performance of benchmark queries varies significantly with respect to the choice of hardware underlying the database and resource description framework (RDF) engine.

60 APPLIED LIFE SCIENCES↗

The False Dilemma: Rethinking AF Science and Technology Officer Talent Management

In 2019, Secretary of the Air Force (SECAF) Heather Wilson launched the 2030 Science and Technology (S&T) Strategy by stating, “The advantage will go to those who create the best technologies and who integrate and field them in creative operational ways that provide military advantages.” In 2021, 15% of Air Force general officers responsible for creating and integrating this technological edge had a science, technology, engineering, and math (STEM) graduate degree, and less than 1% of generals had a STEM doctorate. As one point of comparison, at least 32% and 13% of founding CEOs of Fortune 500 technology companies had a master’s and doctoral STEM degree, respectively. The gulf is larger when you consider that these CEOs used their technical degrees throughout their careers whereas most general officers do not. In large organizations, if the leader does not possess technical knowledge, it is difficult to drive innovation systems and connect ideas to reality. The evidence for this disconnect is abundant in acquisition challenges for high-tech systems, significant pushback to the “revolution in military affairs”, and failure of the “Third Offset” to take hold and deliver capabilities to offset Chinese and Russian capabilities. Indeed, when the former Air Force and Space Force Chief Software Officer, Nicolas M. Chaillan, offered his resignation, one of the main reasons for leaving was “the failure of OSD and the Joint Staff to deliver on their own alleged top ‘priority’, JADC2 – they couldn’t ‘walk the walk.’” Senior leaders have recognized this disconnect, and several inquiries and studies regarding STEM competency have been conducted. Many have posed a false dilemma: a large, STEM-cognizant or small, STEM-expert force. However, current and future STEM human capital needs are managed at the unit and functional area level. This leads to “silos” and the tactical “needs of the present” dominating the strategic “needs of the future”, highlighted by only two functional areas systematically tracking future STEM needs. Therefore, the decision on force structure appears to have been historically made by default through these and other perceived structural realities, and a vast majority of recommendations have focused on the small STEM community – an exercise in diminishing returns. In essence, the solution often boils down to finding unicorns – officers that have chartered the unforgiving pathway through the traditional “gates” to general officer while obtaining sufficient STEM proficiency along the way. Fortunately for the Air Force, these officers exist, albeit at a rate below what the evidence would suggest is necessary. However, this approach fundamentally limits the ability to develop a deep pool of officers with the ability to create and integrate technologies and ensures the Dunning-Kruger effect is prevalent. The Dunning-Kruger effect is a cognitive bias where those with limited knowledge in an area lack the expertise necessary to recognize their lack of expertise and consequently are prone to overestimate their knowledge and performance. In short, we need less leaders overestimating their STEM knowledge and more with hard-earned STEM competency required to “walk the walk” to create and integrate technologies for military advantage. This will not be accomplished by restricting the emphasis to the traditional scientists and engineering (S&E) career fields – the pool, only 10% of line officers, and general officer progression is just too small. Fortunately, the recent SECAF’s Management Initiatives and Chief of Staff’s (CSAF) Action Orders, both containing emphasis on organic expertise to “accrue advantage in military-technological competition,” present an opportunity to truly develop a framework for the force of the future.

99 GENERAL AND MISCELLANEOUS↗

Modular 5'-UTR hexamers for context-independent tuning of protein expression in eukaryotes

Functional characterization of regulatory DNA elements in broad genetic contexts is a prerequisite for forward engineering of biological systems. Translation initiation site (TIS) sequences are attractive to use for regulating gene activity and metabolic pathway fluxes because the genetic changes are minimal. However, limited knowledge is available on tuning gene outputs by varying TISs in different genetic and environmental contexts. Here, we created TIS hexamer libraries in baker’s yeast Saccharomyces cerevisiae directly 5' end of a reporter gene in various promoter contexts and measured gene activity distributions for each library. Next, selected TIS sequences, resulted in almost 10-fold changes in reporter outputs, were experimentally characterized in various environmental and genetic contexts in both yeast and mammalian cells. From our analyses, we observed strong linear correlations (R 2 = 0.75–0.98) between all pairwise combinations of TIS order and gene activity. Finally, our analysis enabled the identification of a TIS with almost 50% stronger output than a commonly used TIS for protein expression in mammalian cells, and selected TISs were also used to tune gene activities in yeast at a metabolic branch point in order to prototype fitness and carotenoid production landscapes. Taken together, the characterized TISs support reliable context-independent forward engineering of translation initiation in eukaryotes.

Biochemistry & Molecular Biology↗