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At least 685 records · Page 38

Challenges and Solutions for Leave-One-Out Biosensor Design in the Context of a Rugged Fitness Landscape

The leave-one-out (LOO) green fluorescent protein (GFP) approach to biosensor design combines computational protein design with split protein reconstitution. LOO-GFPs reversibly fold and gain fluorescence upon encountering the target peptide, which can be redefined by computational design of the LOO site. Such an approach can be used to create reusable biosensors for the early detection of emerging biological threats. Enlightening biophysical inferences for nine LOO-GFP biosensor libraries are presented, with target sequences from dengue, influenza, or HIV, replacing beta strands 7, 8, or 11. An initially low hit rate was traced to components of the energy function, manifesting in the over-rewarding of over-tight side chain packing. Also, screening by colony picking required a low library complexity, but designing a biosensor against a peptide of at least 12 residues requires a high-complexity library. This double-bind was solved using a “piecemeal” iterative design strategy. Also, designed LOO-GFPs fluoresced in the unbound state due to unwanted dimerization, but this was solved by fusing a fully functional prototype LOO-GFP to a fiber-forming protein, Drosophila ultrabithorax, creating a biosensor fiber. One influenza hemagglutinin biosensor is characterized here in detail, showing a shifted excitation/emission spectrum, a micromolar affinity for the target peptide, and an unexpected photo-switching ability.

Chemistry↗

Two Views of the Radius Gap and the Role of Light Curve Fitting

Recently, several groups have resolved a gap that bifurcates planets between the size of Earth and Neptune into two populations. The location and depth of this feature is an important signature of the physical processes that form and sculpt planets. In particular, planets residing in the radius gap are valuable probes of these processes as they may be undergoing the final stages of envelope loss. Here, we discuss two views of the radius gap by Fulton & Petigura (F18) and Van Eylen et al. (V18). In V18, the gap is wider and more devoid of planets. This is due, in part, to V18's more precise measurements of planet radius R{sub p}. Thanks to Gaia, uncertainties in stellar radii R{sub ⋆} are no longer the limiting uncertainties in determining R{sub p} for the majority of Kepler planets; instead, errors in R{sub p}/R{sub ⋆} dominate. V18's analysis incorporated short-cadence photometry along with constraints on mean stellar density that enabled more accurate determinations of R{sub p}/R{sub ⋆}. In the F18 analysis, less accurate R{sub p}/R{sub ⋆} blurs the boundary the radius gap. The differences in R{sub p}/R{sub ⋆} are largest at high impact parameter (b≳0.8) and often exceed 10%. This motivates excluding high-b planets from demographic studies, but identifying such planets from long-cadence photometry alone is challenging. We show that transit duration can serve as an effective proxy, and we leverage this information to enhance the contrast between the super-Earth and sub-Neptune populations.

79 ASTRONOMY AND ASTROPHYSICS↗

Where Do Obscured AGN Fit in a Galaxy’s Timeline?

Many X-ray bright active galactic nuclei (AGNs) are predicted to follow an extended stage of obscured black hole growth. In support of this picture we examine the X-ray undetected AGNs in the COSMOS field and compare their host galaxies with X-ray bright AGNs. We examine galaxies with M {sub *} > 10{sup 9.5} M {sub ⊙} for the presence of AGNs at redshifts z = 0.5–3. We select AGNs in the infrared using Spitzer and Herschel detections and use color selection techniques to select AGNs within strongly star-forming hosts. We stack Chandra X-ray data of galaxies with an infrared (IR) detection but lacking an X-ray detection to obtain soft and hard fluxes, allowing us to measure the energetics of these AGNs. We find a clear correlation between X-ray luminosity and IR AGN luminosity in the stacked galaxies. We also find that X-ray undetected AGNs all lie on the main sequence—the tight correlation between the star formation rate and M {sub *} that holds for the majority of galaxies, regardless of mass or redshift. This work demonstrates that there is a higher population of obscured AGNs than previously thought.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Flexible honeycomb structure can bend to fit compound curves

For flexibility in forming a curved surface, a honeycomb configuration using multiple pleats has proved superior to the usual core structures. The partial pleats formed in individual cell walls permit movements to and from the central axis without tearing.

Carmody, R. J.↗

Computer circuit will fit on single silicon chip

A simplified computer logic circuit of two NAND/NOR gates and three additional inputs to accomplish the count and shift function is described. The circuit has capacity for parallel read-in, counting, serial shiftout, complement input and set and reset.

Smith, C.↗

Miniaturized tube fittings

Titantium alloy miniaturized flareless tube connectors with reduced weight and size for advanced space vehicles

WEIGHT FACTOR↗