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DOE OSTI2023

Site specific N- and O-glycosylation mapping of the spike proteins of SARS-CoV-2 variants of concern

Abstract The glycosylation on the spike (S) protein of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus that causes COVID-19, modulates the viral infection by altering conformational dynamics, receptor interaction and host immune responses. Several variants of concern (VOCs) of SARS-CoV-2 have evolved during the pandemic, and crucial mutations on the S protein of the virus have led to increased transmissibility and immune escape. In this study, we compare the site-specific glycosylation and overall glycomic profiles of the wild type Wuhan-Hu-1 strain (WT) S protein and five VOCs of SARS-CoV-2: Alpha, Beta, Gamma, Delta and Omicron. Interestingly, both N- and O-glycosylation sites on the S protein are highly conserved among the spike mutant variants, particularly at the sites on the receptor-binding domain (RBD). The conservation of glycosylation sites is noteworthy, as over 2 million SARS-CoV-2 S protein sequences have been reported with various amino acid mutations. Our detailed profiling of the glycosylation at each of the individual sites of the S protein across the variants revealed intriguing possible association of glycosylation pattern on the variants and their previously reported infectivity. While the sites are conserved, we observed changes in the N- and O-glycosylation profile across the variants. The newly emerged variants, which showed higher resistance to neutralizing antibodies and vaccines, displayed a decrease in the overall abundance of complex-type glycans with both fucosylation and sialylation and an increase in the oligomannose-type glycans across the sites. Among the variants, the glycosylation sites with significant changes in glycan profile were observed at both the N -terminal domain and RBD of S protein, with Omicron showing the highest deviation. The increase in oligomannose-type happens sequentially from Alpha through Delta. Interestingly, Omicron does not contain more oligomannose-type glycans compared to Delta but does contain more compared to the WT and other VOCs. O-glycosylation at the RBD showed lower occupancy in the VOCs in comparison to the WT. Our study on the sites and pattern of glycosylation on the SARS-CoV-2 S proteins across the VOCs may help to understand how the virus evolved to trick the host immune system. Our study also highlights how the SARS-CoV-2 virus has conserved both N - and O - glycosylation sites on the S protein of the most successful variants even after undergoing extensive mutations, suggesting a correlation between infectivity/ transmissibility and glycosylation.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2024

Realization of a gas puff imaging system on the Wendelstein 7-X stellarator

A system for studying the spatiotemporal dynamics of fluctuations in the boundary of the W7-X plasma using the “Gas-Puff Imaging” (GPI) technique has been designed, constructed, installed, and operated. This GPI system addresses a number of challenges specific to long-pulse superconducting devices, such as W7-X, including the long distance between the plasma and the vacuum vessel wall, the long distance between the plasma and diagnostic ports, the range of last closed flux surface (LCFS) locations for different magnetic configurations in W7-X, and management of heat loads on the system’s plasma-facing components. The system features a pair of “converging–diverging” nozzles for partially collimating the gas puffed locally ≈135 mm radially outboard of the plasma boundary, a pop-up turning mirror for viewing the gas puff emission from the side (which also acts as a shutter for the re-entrant vacuum window), and a high-throughput optical system that collects visible emission resulting from the interaction between the puffed gas and the plasma and directs it along a water-cooled re-entrant tube directly onto the 8 × 16 pixel detector array of the fast camera. The DEGAS 2 neutral code was used to simulate the Hα (656 nm) and HeI (587 nm) line emission expected from well-characterized gas-puffs of H2 and He and excited within typical edge plasma profiles in W7-X, thereby predicting line brightnesses used to reduce the risks associated with system sensitivity and placement of the field of view. Operation of GPI on W7-X shows excellent signal-to-noise ratios (>100 at 2 Mframes/s) over the field of view for minimally perturbing gas puffs. The GPI system provides detailed measurements of the two-dimensional (radial and poloidal) dynamics of plasma fluctuations in the W7-X edge and scrape-off layer and in and around the magnetic islands outside the LCFS that make up the island divertor configuration employed on W7-X.

Instruments & Instrumentation↗

DOE OSTI2022

Power System Resilience Evaluation Framework and Metric Review

Power system resilience has been an emerging hot topic in recent years to investigate the increasing threats of extreme events, such as natural disasters, severe weather, and cyberattacks. Although much research has been done to define, model, and quantify resilience from different aspects, the lack of universally accepted evaluation methods and resilience metrics makes it difficult to assess and compare resilience across different power systems, such as what is typically done in power system reliability studies. In this paper, first, we review the definitions of resilience, and we summarize two core concepts shared by most of the literature. Then, we develop a new framework to assess power system resilience from two perspectives - i.e., pre-event estimation and post-event evaluation - to capture system resilience performance in both general and specific fashions. We conduct a thorough review of existing resilience metrics and categorize them using the proposed framework, where recommendations are also proposed to capture core concepts of resilience.

power system resilience↗

DOE OSTI2023

An Assessment of Nuclear Fuel Options for Microreactors

A design options trade-off study was conducted for various nuclear fuel system options. This study developed requirements for ideal fuel system characteristics and weighted ranking criteria specifically for microreactor designs. A semiquantitative method of consensus ranking on a numeric scale was used with input from several nuclear fuel experts. The purpose of this study was to assess options and provide recommendations for further nuclear fuel technology development to better support small reactor cores. Modern microreactor designs have only recently begun emerging and have little in common except their diminutive size. The purpose of this study was not to determine which reactor type is best (e.g., coolant type and/or neutron energy spectrum), but rather to assess fuel system options within five broad categories of reactor types inspired by: 1) Very High Temperature Reactors (VHTR), 2) Sodium Fast Reactors (SFR), 3) System for Nuclear Auxiliary Power (SNAP) reactors, 4) Gas Fast Reactor (GFR), and 5) Molten Salt Reactors (MSR). The order in which these reactor types were listed generally represents the amount of current interest and technological maturity in the microreactor development community (in descending order). As such, the conclusions drawn for each reactor type category have varying levels of certainty, but there is confidence in the general conclusion that known fuel technologies can support small reactors, but that microreactors will be able to maximize their performance potential if these fuel systems were further optimized. These optimization opportunities were found to revolve around increasing uranium loading and improving behaviors/understanding for long time-at-temperature conditions. Further details about these recommendations can be found in the concluding section of this report.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

DOE OSTI2024

Impact of Floating PV (FPV) System on Water Evaporation: Case Study of an Open Loop Reservoir in North Carolina

Fresh water scarcity is becoming one of the important concerns worldwide. This situation of water scarcity is further exacerbated by the increase in water evaporation due to climate change. This manuscript will address this concern by considering the impact of floating photovoltaics (FPVs) systems on water evaporation. The installation of PV modules on the water bodies can help reduce the water evaporation rate from reservoirs by reducing the evaporating area of the water surface. This work evaluates the effect of FPV on water evaporation rates in the TuckerTown reservoir located in North Carolina state of United States. Meteorological data, such as mean temperature and dew-point, are used to calculate the rate of the water evaporation by Linacre method. The simulation results for the TuckerTown case study showed that the aggregated avoided evaporated volume for one year is 9 million gallons.

14 SOLAR ENERGY↗

DOE OSTI2021

The Los Angeles 100% Renewable Energy Study (LA100): Chapter 7. Distribution System Analysis

The City of Los Angeles has set ambitious goals to transform its electricity supply, aiming to achieve a 100% renewable energy power system by 2045, along with aggressive electrification targets for buildings and vehicles. To reach these goals, and assess the implications for jobs, electricity rates, the environment, and environmental justice, the Los Angeles City Council passed a series of motions directing the Los Angeles Department of Water and Power (LADWP) to determine the technical feasibility and investment pathways of a 100% renewable energy portfolio standard. The Los Angeles 100% Renewable Energy Study (LA100) is a first-of-its-kind objective, rigorous, and science-based power systems analysis to determine what investments could be made to achieve these goals. The LA100 final report is presented as a collection of 12 chapters and an executive summary, each of which is available as an individual download. This chapter summarizes the growth in distribution-connected energy resources and provides a detailed review of impacts to the distribution grid of growth in customer electricity demand, solar, and storage, as well as required distribution grid upgrades and associated costs.

100% Renewable↗

DOE OSTI2021

Analysis of Geologic CO 2 Migration Pathways in Farnsworth Field, NW Anadarko Basin

This study reports on analyses of natural, geologic CO 2 migration paths in Farnsworth Oil Field, northern Texas, where CO 2 was injected into the Pennsylvanian Morrow B reservoir as part of enhanced oil recovery and carbon sequestration efforts. We interpret 2D and 3D seismic reflection datasets of the study site, which is located on the western flank of the Anadarko basin, and compare our seismic interpretations with results from a tracer study. Petroleum system models are developed to understand the petroleum system and petroleum- and CO 2 -migration pathways. We find no evidence of seismically resolvable faults in Farnsworth Field, but interpret a karst structure, erosional structures, and incised valleys. These interpretations are compared with results of a Morrow B well-to-well tracer study that suggests that inter-well flow is up-dip or lateral. Southeastward fluid flow is inhibited by dip direction, thinning, and draping of the Morrow B reservoir over a deeper, eroded formation. Petroleum system models predict a deep basin-ward increase in temperature and maturation of the source rocks. In the northwestern Anadarko Basin, petroleum migration was generally up-dip with local exceptions; the Morrow B sandstone was likely charged by formations both below and overlying the reservoir rock. Based on this analysis, we conclude that CO 2 escape in Farnsworth Field via geologic pathways such as tectonic faults is unlikely. Abandoned or aged wellbores remain a risk for CO 2 escape from the reservoir formation and deserve further monitoring and research.

58 GEOSCIENCES↗

DOE OSTI2023

Spin-squeezed Gottesman-Kitaev-Preskill codes for quantum error correction in atomic ensembles

Gottesman-Kitaev-Preskill (GKP) codes encode a qubit in displaced phase-space combs of a continuous-variable (CV) quantum system and are useful for correcting a variety of high-weight photonic errors. Here we propose atomic ensemble analogs of the single-mode CV GKP code by using the quantum central limit theorem to pull back the phase-space structure of a CV system to the compact phase space of a quantum spin system. We study the optimal recovery performance of these codes under error channels described by stochastic relaxation and isotropic ballistic dephasing processes using the diversity combining approach for calculating channel fidelity. Additionally, we find that the spin GKP codes outperform other spin system codes such as cat codes or binomial codes. Our spin GKP codes based on the two-axis countertwisting interaction and superpositions of SU(2) coherent states are direct spin analogs of the finite-energy CV GKP codes, whereas our codes based on one-axis twisting do not yet have well-studied CV analogs. A state preparation scheme for the spin GKP codes is proposed which uses the linear-combination-of-unitaries method, applicable to both the CV and spin GKP settings. Finally, we discuss a fault-tolerant approximate gate set for quantum computing with spin-GKP-encoded qubits, obtained by translating gates from the CV GKP setting using the quantum central limit theorem.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2022

Environmental Life Cycle Assessment of small water resource recovery facilities: Comparison of mechanical and lagoon systems

Small water resource recovery facilities (WRRFs) serving communities with populations of less than 10,000 people account for 70% of centralized wastewater treatment systems in the United States. Here, with growing interest globally in improving the sustainability of these systems, this study evaluated the environmental life cycle impact and land use tradeoffs of different lagoon and mechanical WRRFs across the diverse climate of Nebraska. Life cycle inventory including construction and operations was collected for 35 existing systems representing a range of commonly used mechanical WRRFs: oxidation ditch, extended aeration, and sequencing batch reactors, and lagoon treatment systems: complete retention, irrigation, and controlled discharge lagoons.

42 ENGINEERING↗

DOE OSTI2021

Data-driven Distributed Learning of Multi-agent Systems: A Koopman Operator Approach

Koopman operator theory provides a model-free technique for studying nonlinear dynamical systems purely from data. Since the Koopman operator is infinite-dimensional, researchers have developed several methods that provide a finite-dimensional approximation of the Koopman operator so that it can be applied for practical use cases. One common thing with most of the methods is that their solutions are obtained by solving a centralized minimization problem. In this work, we treat the dynamical system to be a multi-agent system and propose an algorithm to compute the finite-dimensional approximation of the Koopman operator in a distributed manner using the knowledge of the topology of the underlying multi-agent system. The proposed distributed approach is shown to be equivalent to the centralized learning problem and results in a sparse Koopman whose block structure mimics the Laplacian of the multi-agent system. Extensive simulation studies illustrate the proposed framework on the network of oscillators and the IEEE 68 bus system.

Nandanoori, Sai Pushpak↗

DOE OSTI2024

Development of an Optimal Variable-Pitch Controller for Floating Axial-Flow Marine Hydrokinetic Turbines

This article discusses the development of an optimal variable-pitch controller for floating, axial-flow marine turbines. Recently, OpenFAST, an open-source wind turbine modeling tool, has been extended to model marine turbines. A controller is necessary to simulate marine turbines for different load cases using OpenFAST, which greatly impacts the performance of the energy system. Previous studies have designed controllers using a linearized model of the marine turbine, which can be time-consuming and require the expertise of a control engineer. In this study, we use an automated approach that uses generic models of the marine turbine to identify the controller gains, which can expedite the process of designing a controller. Using an optimizer to identify the control system parameters can additionally improve the controller's performance. The optimal controller tuned using such an approach results in a 20% reduction in the tower-base damage equivalent loading and better tracking of the rated generator speed and power.

axial flow↗

DOE OSTI2020

California Time-of-Use (TOU) Transition: Effects on Distributed Wind and Solar Economic Potential

Time-of-use (TOU) retail energy rates price electricity differently by the time of day, communicating to consumers the costs of supplying electricity diurnally. This study evaluates the impact of Decision D.15.07-001, which mandates a transition in 2020 to default TOU rates for residential ratepayers in California, on the economic viability of behind-the-meter distributed wind and solar systems. Previous studies have demonstrated that increasing wind and solar generation will materially affect the diurnal cost of wholesale electricity. As retail and wholesale prices become more aligned, this could affect the inter-technology economic viability of distributed generation. We assess economic viability through 'economic potential,' or the amount of generation capacity that exceeds a rate of return of 5.4%. In addition, we identify sensitivities of economic potential to capital costs and other techno-economic factors as well as the specific counties and sectors with substantial economic potential. We find that TOU implementation is projected to moderately increase economic potential of distributed wind and marginally decrease that of distributed solar. Over the long-term as variable renewable energy penetration increases in California, particularly utility-scale solar, net peak load and thus peak prices will shift later in the evening. To the extent that retail rates continue to evolve with wholesale prices, we find the changes could positively affect the value of wind generation more than that of solar generation. Over the scenarios considered, model results indicate realistic pathways to reaching a robust distributed wind market in California though solar economic potential was found to be substantially larger than that of wind.

17 WIND ENERGY↗

DOE OSTI2024

Development of an Optimal Variable-Pitch Controller for Floating Axial-Flow Marine Hydrokinetic Turbines: Preprint

This article discusses the development of an optimal variable-pitch controller for floating, axial-flow marine turbines. Recently, OpenFAST, an open-source wind turbine modeling tool, has been extended to model marine turbines. A controller is necessary to simulate marine turbines for different load cases using OpenFAST, which greatly impacts the performance of the energy system. Previous studies have designed controllers using a linearized model of the marine turbine, which can be timeconsuming and require the expertise of a control engineer. In this study, we use an automated approach that uses generic models of the marine turbine to identify the controller gains, which can expedite the process of designing a controller. Using an optimizer to identify the control system parameters can additionally improve the controller's performance. The optimal controller tuned using such an approach results in a 20% reduction in the towerbase damage equivalent loading and better tracking of the rated generator speed and power.

closed-loop control↗

DOE OSTI2024

ARM Aerial Facility (AAF) Merged Value-Added Product Report for Historical G-1 Field Campaigns

For 30 years, the U.S. Department of Energy (DOE) Office of Science supported an instrumented Grumman Gulfstream-1 (G-1) aircraft for atmospheric field campaigns. Data from the final decade of G-1 operations were archived by the Atmospheric Radiation Measurement (ARM) user facility Data Center (ADC) and made publicly available at no cost to all registered users. To ensure a consistent data format and to improve the accessibility of the ARM airborne data, an integrated data set was recently developed covering the final six years of G-1 operations (2013 to 2018). The integrated data set includes data collected from 236 flights (766.4 hours). Four of the seven field campaigns were based in the U.S. One campaign collected data from the wildfires in the U.S. Pacific Northwest and agricultural burns in the lower Mississippi River valley as part of the Biomass Burning Observation Project (BBOP) in 2013. In 2015, the ARM Cloud Aerosol Precipitation Experiment provided data on atmospheric rivers and associated aerosol-cloud interactions that produce heavy precipitation on the U.S. west coast during the early spring. Research data from Airborne Carbon Measurements-V (ACME-V), collected during the summer of 2015, gave scientists insight into trends and variability of trace gases in the atmosphere over the North Slope of Alaska to improve arctic climate models. In the early summer and autumn of 2016, the Holistic Interactions of Shallow Clouds, Aerosols, and Land-Ecosystems (HI-SCALE) campaign provided an extensive data set geared toward coupled processes that affect the life cycle of shallow clouds through the interaction among aerosol, cloud, land surface, and ecosystems. In 2014 (March and October), the airborne sampling moved outside of the U.S. to the city of Manaus in central Amazonia, Brazil, where residential and industrial emissions were extensively characterized by flights of the G-1. The GoAmazon2014/15 aircraft campaign data are being integrated with aquatic and terrestrial ecosystem measurements to quantify anthropogenic perturbations to a usually pristine tropical environment. Another international airborne mission was carried out in the Eastern North Atlantic region. The Aerosol and Cloud Experiments in the Eastern North Atlantic (ACE-ENA) campaign saw the G-1 aircraft fly from Terceira Island in the Azores during the summer of 2017 and the winter of 2018. The campaign studied both seasons to measure key aerosol and cloud processes under various meteorological and cloud conditions with different aerosol sources. Then the G-1 deployed to the Sierras de Córdoba range in central Argentina from October to November 2018 for the Cloud, Aerosol, and Complex Terrain Interactions (CACTI) campaign to study orographic convective cloud interactions with their surrounding environment. These comprehensive datastreams provide much-needed insight into spatiotemporal variability of thermodynamic quantities, aerosol and cloud states, and properties for addressing essential science questions in Earth system process studies.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

ARM Aerial Facility (AAF) Merged Value-Added Product Report for Historical G-1 Field Campaigns

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Light-induced electron spin qubit coherences in the purple bacteria reaction center protein

Photosynthetic reaction center proteins (RCs) provide ideal model systems for studying quantum entanglement between multiple spins, a quantum mechanical phenomenon wherein the properties of the entangled particles become inherently correlated. Following light-generated sequential electron transfer, RCs generate spin-correlated radical pairs (SCRPs), also referred to as entangled spin qubit (radical) pairs (SQPs). Understanding and controlling coherence mechanisms in SCRP/SQPs is important for realizing practical uses of electron spin qubits in quantum sensing applications. The bacterial RC (bRC) provides an experimental system for exploring quantum effects in the SCRP P 865 + Q A − , where P 865 , a special pair of bacteriochlorophylls, is the primary donor, and Q A is the primary quinone acceptor. In this study, we focus on understanding how local molecular environments and isotopic substitution, particularly deuteration, influence spin coherence times (T M ). Using high-frequency electron paramagnetic resonance (EPR) spectroscopy, we observed that the local environment surrounding P 865 and Q A plays a significant role in determining T M . Our findings show that while deuteration led to a modest increase in T M , particularly at low temperatures, but the effect was substantially smaller than predicted by classical nuclear spin diffusion alone. This result is in contrast to our previous study of the photosystem I (PSI) RC, where no increase in T M was observed upon deuteration. Theoretical modeling identified several methyl groups at key distances from the spin centers of both bRC and PSI, and methyl group tunneling at low temperatures has been previously suggested as a mechanism for enhanced spin decoherence. Additionally, our study revealed a strong dependence of spin coherence on the orientation of the external magnetic field, highlighting the influence of the protein microenvironment on spin dynamics. In conclusion, these results offer new insights for optimizing coherence times in quantum system design for quantum information science and sensing applications.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Comparison of Magnetic Field Emission from Unipolar and Bipolar Coil-Based Wireless Charging Systems

In this study, the leakage magnetic field (LMF) from the unipolar (circular, rectangular, etc.) and bipolar (double-D) coil-based wireless charging systems (WCSs) are investigated and compared. The unipolar and bipolar pads, which are the two most widely adopted charging-pads, have significantly different magnetic field emission characteristics. In this paper, the spatial-distribution and vector-pattern of the leakage magnetic field are studied and compared for similar 11 kW unipolar and bipolar coil-based WCSs. The field emissions are simulated using finite element analysis (FEA) and tested experimentally with an 11 kW bipolar coil-based WCS prototype. The results show that the leakage magnetic field of the unipolar and bipolar pads have widely different vector-orientation and spatial distributions of the leakage magnetic field. The results show that the unipolar coil based WCS has a dominant vertical and the bipolar pads coil-based WCS has dominant horizontally aligned leakage magnetic field. Considering the shielding, the aluminum plate is found highly effective for the unipolar pad and almost ineffective for bipolar pads.

Mohammad, Mostak↗

DOE OSTI2020

Stochastically Realized Observables for Excitonic Molecular Aggregates

In this work, we show that a stochastic approach enables calculations of the optical properties of large 2-dimensional and nanotubular excitonic molecular aggregates. Previous studies of such systems relied on numerically diagonalizing the dense and disordered Frenkel Hamiltonian, which scales approximately as $\mathcal{O}$($N$ 3 ) for $N$ dye molecules. Our approach scales much more efficiently as $\mathcal{O}$($N$ log($N$)), enabling quick study of systems with a million of coupled molecules on the micrometer size scale. We calculate several important experimental observables, including the optical absorption spectrum and density of states, and develop a stochastic formalism for the participation ratio. Quantitative agreement with traditional matrix diagonalization methods is demonstrated for both small- and intermediate-size systems. The stochastic methodology enables the study of the effects of spatial-correlation in site energies on the optical signatures of large 2D aggregates. Our results demonstrate that stochastic methods present a path forward for screening structural parameters and validating experiments and theoretical predictions in large excitonic aggregates.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗