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At least 685 records · Page 38

Native Natural circulation in VERA

This work seeks to introduce a native natural circulation solver to VERA's thermohydraulics capabilities. This work begins with initial investigations into the viability of such a solver by determining the fundamental equations as well as necessary inputs. The method was then implemented in the form of a Python script coupled to CTF which was compared to TRACE. Once viability of the natural circulation solver was established, it was then implemented natively in MPACT for use with previously created simplified thermohydraulics solvers. This new implementation of the native natural circulation solver in MPACT is then tested for single physics problems for both a BWR and PWR single channel model and compared to TRACE where it shows an error of about 30% for BWRs and about 15% for PWRs. The solver is additionally tested for NuScale based models where it demonstrates an error to the reported flow rate of about 10%, resulting in an eigenvalue error of only 138 pcm when comparing fixed flow rate multiphysics runs. Finally, the solver is tested in multiphysics systems for a small PWR assembly, a small BWR assembly, and a full core approximate model of the NuScale design. In these multiphysics runs, it demonstrates no impact on multiphysics convergence stability, as well as negligible impact on runtimes. (authors)

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

Generation of Reversible C++ Code for Optimistic Parallel Discrete Event Simulation

The reversible execution of C/C++ code has been a target of research and engineering for more than a decade as reversible computation has become a central notion in large-scale parallel discrete event simulation (PDES). The simulation models that are implemented for PDES are of increasing complexity and size and require various language features to support abstraction, encapsulation, and composition when building a simulation model. In this paper, we focus on parallel simulation models that are written with user-defined C++ abstractions and abstractions of the C++ Standard Library. We present an approach based on incremental state saving for establishing reversibility of C++ and an evaluation for a kinetic Monte-Carlo simulation implemented in C++. Although a significant runtime overhead is introduced with our technique, it is an enormous win that it allows using the entire C++ language, and has that code automatically transformed into reversible code to enable parallel execution with the Rensselaer’s optimistic simulation system (ROSS).

97 MATHEMATICS AND COMPUTING↗

An Evaluation of the Network Simulators in Large-Scale Distributed Simulations

This is a survey paper about the state-of-the-art in large-scale network simulation. Networks for the smart grids are characterized by millions of sensor nodes exchanging information about the status of the grid. This information exchange must be realized reliably and efficiently due to the mission critical nature of the power grid. Hence, the applications and the network protocols developed for the smart grid need go through rigorous testing and analysis before deployment. Developers usually do not have access to such a large-scale network that can be used as a controlled test-bed; therefore, network simulation becomes an essential tool for testing. Network simulation is a well studied problem in the literature and there are various widely used network simulators. These simulators can be adopted for testing applications and protocols of the smart grid. Due to the scale of these networks, parallel/distributed simulations need to be conducted. Even though most network simulators support distributed simulations, generating a large-scale network model to simulate can still be a cumbersome task. In this survey, we describe a selection of commonly used network simulators and evaluate them with respect to the following features that can aid users in distributed simulations of large-scale networks: transparency of setting up distributed simulation, automated topology generation, information hiding, lightweight routing protocols, network error simulation, evaluation of the network model during simulation and trace analysis tools. As a complementary result, we identify two issues with network simulators that can be addressed with runtime steering methods.

99 GENERAL AND MISCELLANEOUS↗

Characterizing MPI matching via trace-based simulation

With the increased scale expected on future leadership-class systems, detailed information about the resource usage and performance of MPI message matching provides important insights into how to maintain application performance on next-generation systems. However, obtaining MPI message matching performance data is often not possible without significant effort. A common approach is to instrument an MPI implementation to collect relevant statistics. While this approach can provide important data, collecting matching data at runtime perturbs the application's execution, including its matching performance, and is highly dependent on the MPI library's matchlist implementation. In this paper, we introduce a trace-based simulation approach to obtain detailed MPI message matching performance data for MPI applications without perturbing their execution. Using a number of key parallel workloads, we demonstrate that this simulator approach can rapidly and accurately characterize matching behavior. Specifically, we use our simulator to collect several important statistics about the operation of the MPI posted and unexpected queues. For example, we present data about search lengths and the duration that messages spend in the queues waiting to be matched. Here, data gathered using this simulation-based approach have significant potential to aid hardware designers in determining resource allocation for MPI matching functions and provide application and middleware developers with insight into the scalability issues associated with MPI message matching.

97 MATHEMATICS AND COMPUTING↗

Simplifying virtual machine introspection using LibVMI

Ensuring the security of a computer system requires the careful integration of many components. Key among these is security monitoring. Recent research trends show an increasing acceptance of external host-based monitoring techniques such as virtual machine introspection (VMI), a technique for viewing the runtime state of a virtual machine (VM). VMI’s primary drawbacks include performance and the semantic gap problem (i.e., understanding the low-level information available through VMI). This report describes work performed under an Early Career Laboratory Directed Research and Development (LDRD) project that aimed to address these two key challenges. Our results are promising, with significant performance improvements and a much more usable VMI programming environment. This work resulted in the creation and release of LibVMI, an open source software project based on the author’s previous work with the XenAccess library.

Payne, Bryan D.↗

System and method for characterization of retrofit opportunities in building using data from communicating thermostats

Systems and methods for characterization of retrofit opportunities are described. The methods may comprise computing, using at least one computing device disposed remote from a building and based at least in part on heating, ventilation and air conditioning (HVAC) runtime data associated with the building, one or more thermal characteristics of the building. In some embodiments, a model-predicted indoor temperature may be fitted against thermal data measured by a thermostat at the building. The thermal characteristic of the building may comprise a thermal insulation, an air leakage rate and/or an HVAC efficiency. The method may be used to determine, using the at least one computing device, suitability of the building for a retrofit opportunity to improve energy efficiency of the building. Determining the suitability may comprise evaluating the one or more thermal characteristics. The HVAC runtime data may be computed based on data received from a thermostat or a meter, such as an electric or a gas meter.

Zeifman, Michael↗

System and method for characterization of retrofit opportunities in building using data from interval meters

Systems and methods for characterization of retrofit opportunities are described. The methods may comprise computing, using at least one computing device disposed remote from a building and based at least in part on heating, ventilation and air conditioning (HVAC) runtime data associated with the building, one or more thermal characteristics of the building. In some embodiments, a model-predicted indoor temperature may be fitted against thermal data measured by a thermostat at the building. The thermal characteristic of the building may comprise a thermal insulation, an air leakage rate and/or an HVAC efficiency. The method may be used to determine, using the at least one computing device, suitability of the building for a retrofit opportunity to improve energy efficiency of the building. Determining the suitability may comprise evaluating the one or more thermal characteristics. The HVAC runtime data may be computed based on data received from a thermostat or a meter, such as an electric or a gas meter.

Zeifman, Michael↗

Verifying PLC Programs via Monitors: Extending the Integration of FRET and PLCverif

Verification of Programmable Logic Controller (PLC) programs requires reasoning about propositions qualified in terms of time. CERN’s PLCverif, an open-source tool for the analysis of safety-critical PLC systems, uses Linear Temporal Logic (LTL) for the specification of properties. Until now, PLCverif depended on third-party tools that accept LTL specifications to perform verification. However, our experience with industrial PLC programs shows that, to overcome analysis limitations, a wide range of techniques are needed to successfully verify complex properties. In this paper, we extend PLCverif to enable PLC program verification of pure-past LTL (PLTL) safety properties with assertion-based verification tools. To this end, we take an algorithm from the runtime-monitoring domain, apply it to bounded model checking of PLC programs, and implement it in PLCverif. We extend the integration of NASA’s Formal Requirements Elicitation Tool (FRET) into PLCverif to use PLTL properties generated with FRET. In addition, we leverage the program structure induced by the PLC scan-cycle for a state-space reduction. Finally, we expose the algorithm to a real-world case study of critical systems at CERN.

Formal verification↗

Gilgamesh: A Multithreaded Processor-In-Memory Architecture for Petaflops Computing

Processor-in-Memory (PIM) architectures avoid the von Neumann bottleneck in conventional machines by integrating high-density DRAM and CMOS logic on the same chip. Parallel systems based on this new technology are expected to provide higher scalability, adaptability, robustness, fault tolerance and lower power consumption than current MPPs or commodity clusters. In this paper we describe the design of Gilgamesh, a PIM-based massively parallel architecture, and elements of its execution model. Gilgamesh extends existing PIM capabilities by incorporating advanced mechanisms for virtualizing tasks and data and providing adaptive resource management for load balancing and latency tolerance. The Gilgamesh execution model is based on macroservers, a middleware layer which supports object-based runtime management of data and threads allowing explicit and dynamic control of locality and load balancing. The paper concludes with a discussion of related research activities and an outlook to future work.

management locality load balance↗

Integrating Asynchronous Task Parallelism with OpenSHMEM, In: OpenSHMEM 2016: OpenSHMEM and Related Technologies. Enhancing OpenSHMEM for Hybrid Environments

Partitioned Global Address Space (PGAS) programming models combine shared and distributed memory features, and provide a foundation for high-productivity parallel programming using lightweight one-sided communications. The OpenSHMEM programming interface has recently begun gaining popularity as a lightweight library-based approach for developing PGAS applications, in part through its use of a symmetric heap to realize more efficient implementations of global pointers than in other PGAS systems. However, current approaches to hybrid inter-node and intra-node parallel programming in OpenSHMEM rely on the use of multithreaded programming models (e.g., pthreads, OpenMP) that harness intra-node parallelism but are opaque to the OpenSHMEM runtime. This OpenSHMEM+X approach can encounter performance challenges such as bottlenecks on shared resources, long pause times due to load imbalances, and poor data locality. Furthermore, OpenSHMEM+X requires the expertise of hero-level programmers, compared to the use of just OpenSHMEM. All of these are hard challenges to mitigate with incremental changes. This situation will worsen as computing nodes increase their use of accelerators and heterogeneous memories.

Computer Science↗

static-subid: Deterministic subordinate UID/GID assignment for unprivileged containers

static-subid calculates predictable subordinate UID and GID ranges for Linux users based on their UID, ensuring consistent ID mappings across multiple systems. Unlike shadow-utils' sequential allocation (which depends on creation order), static-subid uses a deterministic formula that guarantees the same user UID always receives the same subordinate ID range. Subordinate IDs enable user namespaces for unprivileged container runtimes (Podman, Docker rootless mode, LXC) by mapping container UIDs/GIDs to host subordinate IDs without requiring root privileges.

Riehecky, Pat [Fermi National Accelerator Laborato↗

TU-FG-201-04: Computer Vision in Autonomous Quality Assurance of Linear Accelerators

Purpose: Routine quality assurance (QA) of linear accelerators represents a critical and costly element of a radiation oncology center. Recently, a system was developed to autonomously perform routine quality assurance on linear accelerators. The purpose of this work is to extend this system and contribute computer vision techniques for obtaining quantitative measurements for a monthly multi-leaf collimator (MLC) QA test specified by TG-142, namely leaf position accuracy, and demonstrate extensibility for additional routines. Methods: Grayscale images of a picket fence delivery on a radioluminescent phosphor coated phantom are captured using a CMOS camera. Collected images are processed to correct for camera distortions, rotation and alignment, reduce noise, and enhance contrast. The location of each MLC leaf is determined through logistic fitting and a priori modeling based on knowledge of the delivered beams. Using the data collected and the criteria from TG-142, a decision is made on whether or not the leaf position accuracy of the MLC passes or fails. Results: The locations of all MLC leaf edges are found for three different picket fence images in a picket fence routine to 0.1mm/1pixel precision. The program to correct for image alignment and determination of leaf positions requires a runtime of 21– 25 seconds for a single picket, and 44 – 46 seconds for a group of three pickets on a standard workstation CPU, 2.2 GHz Intel Core i7. Conclusion: MLC leaf edges were successfully found using techniques in computer vision. With the addition of computer vision techniques to the previously described autonomous QA system, the system is able to quickly perform complete QA routines with minimal human contribution.

60 APPLIED LIFE SCIENCES↗

A Co-design Framework for Online Data Analysis and Reduction

Science applications preparing for the exascale era are increasingly exploring in situ computations comprising of simulation-analysis-reduction pipelines coupled in-memory. Efficient composition and execution of such complex pipelines for a target platform is a codesign process that evaluates the impact and tradeoffs of various application- and system-specific parameters. In this article, we describe a toolset for automating performance studies of composed HPC applications that perform online data reduction and analysis. We describe Cheetah, a new framework for composing parametric studies on coupled applications, and Savanna, a runtime engine for orchestrating and executing campaigns of codesign experiments. Furthermore, this toolset facilitates understanding the impact of various factors such as process placement, synchronicity of algorithms, and storage versus compute requirements for online analysis of large data. Ultimately, we aim to create a catalog of performance results that can help scientists understand tradeoffs when designing next-generation simulations that make use of online processing techniques. We illustrate the design of Cheetah and Savanna, and present application examples that use this framework to conduct codesign studies on small clusters as well as leadership class supercomputers.

97 MATHEMATICS AND COMPUTING↗

Architectural Analysis of Dynamically Reconfigurable Systems

oTpics include: the problem (increased flexibility of architectural styles decrease analyzability, behavior emerges and varies depending on the configuration, does the resulting system run according to the intended design, and architectural decisions can impede or facilitate testing); top down approach to architecture analysis, detection of defects and deviations, and architecture and its testability; currently targeted projects GMSEC and CFS; analyzing software architectures; analyzing runtime events; actual architecture recognition; GMPUB in Dynamic SAVE; sample output from new approach; taking message timing delays into account; CFS examples of architecture and testability; some recommendations for improved testablity; and CFS examples of abstract interfaces and testability; CFS example of opening some internal details.

Lindvall, Mikael↗

Minimum-Violation Traffic Management for Urban Air Mobility

Urban air mobility (UAM) refers to air transportation services in and over an urban area and has the potential to revolutionize mobility solutions. However, due to the projected scale of operations, current air traffic management (ATM) techniques are not viable. Increasingly autonomous systems are a pathway to accelerate the realization of UAM operations but must be fielded safely and efficiently. The heavily regulated, safety critical nature of aviation may lead to multiple, competing safety constraints that can be traded off based on the operational context. In this paper, we design a framework which allows for the scalable planning of a UAM ATM system. We formalize safety oriented constraints derived from FAA regulations by encoding them as temporal logic formulae. We then propose a method for UAM ATM that is both scalable and minimally violates the temporal logic constraints. Numerical results show that the runtime for our proposed algorithm is suitable for very large problems and is backed by theoretical guarantees of correctness with respect to given temporal logic constraints.

Urban Air Mobility↗

TU-D-209-03: Alignment of the Patient Graphic Model Using Fluoroscopic Images for Skin Dose Mapping

Purpose: The Dose Tracking System (DTS) was developed to provide realtime feedback of skin dose and dose rate during interventional fluoroscopic procedures. A color map on a 3D graphic of the patient represents the cumulative dose distribution on the skin. Automated image correlation algorithms are described which use the fluoroscopic procedure images to align and scale the patient graphic for more accurate dose mapping. Methods: Currently, the DTS employs manual patient graphic selection and alignment. To improve the accuracy of dose mapping and automate the software, various methods are explored to extract information about the beam location and patient morphology from the procedure images. To match patient anatomy with a reference projection image, preprocessing is first used, including edge enhancement, edge detection, and contour detection. Template matching algorithms from OpenCV are then employed to find the location of the beam. Once a match is found, the reference graphic is scaled and rotated to fit the patient, using image registration correlation functions in Matlab. The algorithm runs correlation functions for all points and maps all correlation confidences to a surface map. The highest point of correlation is used for alignment and scaling. The transformation data is saved for later model scaling. Results: Anatomic recognition is used to find matching features between model and image and image registration correlation provides for alignment and scaling at any rotation angle with less than onesecond runtime, and at noise levels in excess of 150% of those found in normal procedures. Conclusion: The algorithm provides the necessary scaling and alignment tools to improve the accuracy of dose distribution mapping on the patient graphic with the DTS. Partial support from NIH Grant R01-EB002873 and Toshiba Medical Systems Corp.

60 APPLIED LIFE SCIENCES↗

Exploring the Landscape of Distributed Graph Clustering on Leadership Supercomputers

The rapid growth of large-scale datasets in fields like biology and social networks has driven the need for advanced graph analytics techniques. Community detection, a fundamental task in graph analytics, identifies closely connected groups of nodes within a network, providing valuable insights across various disciplines. This study focuses on two classic community detection methods, the Louvain algorithm and Markov Clustering (MCL), and evaluates the performance of two prominent distributed community detection algorithms: HiPDPL-GPU, our prior implementation, and HipMCL. We conduct experiments on GPU-accelerated heterogeneous HPC systems, Summit and Frontier, to assess their performance under varying conditions. Our objective is to identify the strengths and weaknesses of these algorithms in terms of scalability, and quality of solutions. We evaluate these algorithms on a diverse set of 70+ networks spanning 13 domains, with sizes ranging up to 4.2 billion edges. Our results demonstrate that HiPDPL-GPU consistently outperforms HipMCL, especially for large-scale networks. HiPDPL-GPU achieves significantly faster runtimes (47x to 1439x), higher modularity scores, and improved scalability. These findings highlight HiPDPL-GPU as a promising solution for efficient and effective large-scale graph analytics in diverse application domains, and provide insights into the feasibility of using MCL-based approaches for certain application domains.

Community detection, graph algorithms↗

A distributed analysis and visualization system for model and observational data

Software was developed with NASA support to aid in the analysis and display of the massive amounts of data generated from satellites, observational field programs, and from model simulations. This software was developed in the context of the PATHFINDER (Probing ATmospHeric Flows in an Interactive and Distributed EnviRonment) Project. The overall aim of this project is to create a flexible, modular, and distributed environment for data handling, modeling simulations, data analysis, and visualization of atmospheric and fluid flows. Software completed with NASA support includes GEMPAK analysis, data handling, and display modules for which collaborators at NASA had primary responsibility, and prototype software modules for three-dimensional interactive and distributed control and display as well as data handling, for which NSCA was responsible. Overall process control was handled through a scientific and visualization application builder from Silicon Graphics known as the Iris Explorer. In addition, the GEMPAK related work (GEMVIS) was also ported to the Advanced Visualization System (AVS) application builder. Many modules were developed to enhance those already available in Iris Explorer including HDF file support, improved visualization and display, simple lattice math, and the handling of metadata through development of a new grid datatype. Complete source and runtime binaries along with on-line documentation is available via the World Wide Web at: http://redrock.ncsa.uiuc.edu/ PATHFINDER/pathre12/top/top.html.

Wilhelmson, Robert B.↗