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Water Networks in Photosystem II Using Crystalline Molecular Dynamics Simulations and Room-Temperature XFEL Serial Crystallography
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Testbed and Simulation-based Evaluation of Privacy-preserving Algorithms for Smart Grid AMI Networks
Although smart meters are deployed in a lot of countries as a result of aiming to make the power grid more resilient and efficient, the data collection process from smart meters in Smart Grid (SG) has still challenges that relate to consumer privacy. Referred to as Advanced Metering Infrastructure (AMI), the data collected and transmitted through this AMI can leak sensitive information about the consumers if it is sent as plaintext. While a number of solutions have been proposed in the past, the deployment of these solutions in real-life was not possible since the actual AMIs were not accessible to researchers. Therefore, a lot of solutions relied on simulations which may not be able to capture the performance of these solutions. In this paper, we pick a widely used homomorphic-based aggregation and implement it in a realistic testbed so that it can be compared with a simulation-based solution. Specifically, we develop a system that provides privacy with the Paillier cryptosystem and twofactor authentication with ECDSA and OpenSSL certificates. In order to test the system, an IEEE 802.11s-based SG AMI network testbed is constructed with Beaglebone Black boards that imitate the behavior of smart meters. The same network is also simulated in widely used ns-3. The results showed that ns-3 simulation and testbed results are parallel in most cases and the proposed system can perform effectively. However, there are still many differences that need to be taken into account in deploying real systems.
Compressing Hamiltonians with ab initio downfolding for simulating strongly-correlated materials on quantum computers
The accurate first-principles description of strongly correlated materials is an important and challenging problem in condensed matter physics. Ab initio downfolding has emerged as a way of deriving compressed many-body Hamiltonians that maintain the essential physics of strongly correlated materials. The solution of these material-specific models is still exponentially difficult to generate on classical computers, but quantum algorithms allow for a significant speed-up in obtaining the ground states of these compressed Hamiltonians. Here, we demonstrate that using quantum algorithms to obtain the properties of downfolded Hamiltonians can indeed yield high-fidelity solutions. By combining ab initio downfolding and variational quantum eigensolvers, we correctly predict the antiferromagnetic state of one-dimensional cuprate Ca 2 Cu O 3 , the excitonic ground state of monolayer W Te 2 , and the charge-ordered state of correlated metal Sr VO 3 . Numerical simulations using a classical tensor network implementation of variational quantum eigensolvers allow us to simulate large models with up to 54 qubits and encompassing up to four bands in the correlated subspace, which is indicative of the complexity that our framework can address. Through these methods we demonstrate the potential of classical preoptimization and downfolding techniques for enabling efficient materials simulation using quantum algorithms.
A Participation Factor-Based Approach for Defining the EMT Model Boundary for Power System Simulations with Inverter-Based Resources
The increasing penetration of inverter-based resources (IBRs) introduces new challenges to power system simulations, particularly with the emergence of fast electromagnetic transient (EMT) dynamics and sub-synchronous oscillations (SSO) that require time-consuming EMT simulations. To reduce the time cost for simulating a large-scale power grid with IBRs, this paper proposes a novel participation factor-based approach for defining a critical zone for detailed EMT modeling and simulations, which includes the IBRs, synchronous generators, and the network components participating significantly in simulated contingencies. Both model-based and response-based methods are introduced for the estimation of participation factors (PFs). The case study on the 240-bus Western Electricity Coordinating Council (WECC) system demonstrates that the EMT zone determined by the proposed approach can effectively capture power system dynamics involving IBRs.
Modeling of a Networked Community Microgrid with High Solar Penetration Considering Control Dynamics of Inverter-Based Resources
Microgrids help facilitate the integration of renewable energy in distribution-level grids and increase the resilience of the electric grid to extreme weather, especially in rural areas. Compared to traditional microgrids, a networked microgrid leverages multiple grid-forming sources to form a potential meshed grid and is more flexible in operation. This paper demonstrates the simulation modeling of an actual networked microgrid located in Adjuntas, Puerto Rico. The model contains representations of power inverters that connect the battery energy storage systems and photovoltaic generation systems to the networked microgrid and is capable of simulating fast grid transients as well as long-term operation of the networked microgrid. The modeling technique for power inverters allows the time-efficient simulation of the microgrid with a minimal penalty on model accuracy.
Python Urban Deployment Model (PyUDM) v1.0.0
The Python Urban Deployment Model (PyUDM) is a simulation tool used to investigate networks of static radiation detectors in urban environments. PyUDM simulates traffic, stationary NaI gamma-ray detectors, and moving radioactive sources on simulated vehicles. The analyzed output of the simulations contain valuable insights into the performance of different configurations of urban radiological detector configurations such as their ability to detect sources moving through the environment. To accurately simulate radioactive material moving through urban environments, PyUDM combines Monte Carlo simulation tools, publicly available map and traffic data, and measured gamma-ray spectra from urban environments.
Hardware-in-the-loop Testing of Network Protectors for Low-Voltage Networks with Distributed Energy Resources
In this report, we developed and validated a network protector relay digital twin model and interfaced a commonly used network protector relay hardware with our real-time simulation system. Hardware-in-the-loop protection studies are performed to assess the impact of distributed energy resources (DER) and benchmark a rate-of-change-based mitigation strategy. Simulation results suggest that the network protector reverse trip and auto-reclose functions are negatively impacted by the high distributed energy resource penetration. To accommodate DER backfeed while remaining secure and reliable for faults on primary feeders, we recommend options for a rate-of-change-based blocking scheme and a protection setting change. Finally, future mitigation ideas and standard revisions are discussed.
Techno-Economic Modelling of Tidal Energy Converter Arrays in the Tacoma Narrows
Hydrokinetic tidal energy converter (TEC) technology is yet to become cost competitive with other renewable energy sources. Understanding the interaction between energy production and the costs incurred harvesting that energy may unlock the economic potential of this technology. Although hydrodynamic simulation of TEC arrays has matured over time, including demonstration of how small and large arrays affect the resource, integration of cost modelling is often limited. The advanced ocean energy array techno-economic modelling tool ‘DTOcean’ enables designers to calculate and improve the levelised cost of energy (LCOE) of an array through parametric simulation of the energy extraction, design of the electrical network, moorings and foundations, and simulation of the installation and lifetime operations and maintenance of the array. This work presents a verification of DTOcean’s ability to simulate the techno-economic performance of TEC arrays by reproducing the hypothetical RM1 reference model, a semi-analytical model of a TEC array based in the Tacoma Narrows of Washington state, U.S.A. It is demonstrated that DTOcean can produce a reasonable estimate to the LCOE predicted by the reference model, giving (in Euro cents per kiloWatt hour) 36.69 ¢/kWh against the reference model’s 34.612 ¢/kWh for 10 TECs, while for 50 TECs, DTOcean calculated 20.34 ¢/kWh compared to 17.34 ¢/kWh for the reference model.
Transition of a network of nonlinear interactions into a regime of strong nonlinear fluctuations: A paradigm for the edge localized mode onset
We study how a network of nonlinear oscillators transits into a regime of strong nonlinear fluctuations when perturbed by a triad. In this regime, most of the potential energy contained in the waves is made available to the system through strong nonlinear fluctuations. This analysis is motivated by recent experimental observations [Dominski and Diallo, Plasma Phys. Control. Fusion 62, 095011 (2020)] where it was found that magnetic fluctuations trigger the onset of edge localized modes by suddenly exciting a network of nonlinear interactions. In our study, we consider the simplest system of many harmonic oscillators that are organized in a network of nonlinear triads. We model and simulate the sudden transition of this network of triads into a regime of strong nonlinear fluctuations—reminiscent of the onset of edge localized modes in tokamaks. This transition is triggered by the activation of a nonlinear perturbation. An abrupt rise of the system's disorder (an entropy-like quantity) is measured during the transition. This transition from weak to strong nonlinear fluctuations is even more abrupt when these fluctuations are chaotic, i.e., when the timescale of the nonlinear interaction is comparable to the timescale of the wave oscillations.
Physics-guided neural networks with engineering domain knowledge for hybrid process modeling
As neural networks are more frequently used to solve problems in science and engineering, the methods used to incorporate scientific knowledge into these networks are becoming increasingly complex. Here, this work breaks down these complicated techniques into a set of basic strategies which can easily be applied to diverse situations. Several novel neural networks are built using the categories laid out in this work. These networks are tested on simulated data from a continuous stirred tank reactor (CSTR) model to evaluate the advantages provided by each network. The three points demonstrated in this work are: (1) architectural hybrid models can speed up convergence and reduce the amount of data necessary to train a model; (2) adding a physics-guided loss function can improve model generalization and make models more physically consistent; (3) using physics-guided initialization and transfer learning improves accuracy and speeds up convergence, but can harm generalizability if used incorrectly.
Computational Power of Random Quantum Circuits in Arbitrary Geometries
Empirical evidence for a gap between the computational powers of classical and quantum computers has been provided by experiments that sample the output distributions of two-dimensional quantum circuits. Many attempts to close this gap have utilized classical simulations based on tensor network techniques, and their limitations shed light on the improvements to quantum hardware required to frustrate classical simulability. In particular, quantum computers having in excess of approximately 50 qubits are primarily vulnerable to classical simulation due to restrictions on their gate fidelity and their connectivity, the latter determining how many gates are required (and, therefore, how much infidelity is suffered) in generating highly entangled states. Here, we describe recent hardware upgrades to Quantinuum’s H2 quantum computer, enabling it to operate on up to 56 qubits with arbitrary connectivity and 99.843(5)% two-qubit gate fidelity. We define a class of circuits with random geometries that become hard to classically simulate in very low depth and implement them utilizing the flexible connectivity of H2. A careful analysis demonstrating the fast saturation of classical simulation complexity with depth indicates that H2 can yield data well beyond the reach of state-of-the art classical simulation methods at unprecedented fidelities. We find that the considerable difficulty of classically simulating H2 is likely limited only by qubit number, demonstrating the promise and scalability of the quantum charge-coupled device architecture as continued progress is made toward building larger machines. Published by the American Physical Society 2025
Fast and accurate simulations of calorimeter showers with normalizing flows
In this study, we introduce caloflow, a fast detector simulation framework based on normalizing flows. For the first time, we demonstrate that normalizing flows can reproduce many-channel calorimeter showers with extremely high fidelity, providing a fresh alternative to computationally expensive geant4 simulations, as well as other state-of-the-art fast simulation frameworks based on generative adversarial networks (GANs) or variational autoencoders (VAEs). In addition to the usual histograms of physical features and images of calorimeter showers, we introduce a new metric for judging the quality of generative modeling: the performance of a classifier trained to differentiate real from generated images. We show that GAN-generated images can be identified by the classifier with nearly 100% accuracy, while images generated from caloflow are better able to fool the classifier. More broadly, normalizing flows offer several advantages compared to other state-of-the-art approaches (GANs and VAEs), including tractable likelihoods, stable and convergent training, and principled model selection. Normalizing flows also provide a bijective mapping between data and the latent space, which could have other applications beyond simulation, for example, to detector unfolding.
Calibrating Bayesian generative machine learning for Bayesiamplification
Recently, combinations of generative and Bayesian deep learning have been introduced in particle physics for both fast detector simulation and inference tasks. These neural networks aim to quantify the uncertainty on the generated distribution originating from limited training statistics. The interpretation of a distribution-wide uncertainty however remains ill-defined. We show a clear scheme for quantifying the calibration of Bayesian generative machine learning models. For a Continuous Normalizing Flow applied to a low-dimensional toy example, we evaluate the calibration of Bayesian uncertainties from either a mean-field Gaussian weight posterior, or Monte Carlo sampling network weights, to gauge their behaviour on unsteady distribution edges. Well calibrated uncertainties can then be used to roughly estimate the number of uncorrelated truth samples that are equivalent to the generated sample and clearly indicate data amplification for smooth features of the distribution.
Open-source framework for power system transmission and distribution dynamics co-simulation
The promise of the smart grid entails more interactions between the transmission and distribution networks, and there is an immediate need for tools to provide the comprehensive modelling and simulation required to integrate operations at both transmission and distribution levels. Existing electromagnetic transient simulators can perform simulations with integration of transmission and distribution systems, but the computational burden is high for large-scale system analysis. For transient stability analysis, currently there are only separate tools for simulating transient dynamics of the transmission and distribution systems. In this paper, we introduce an open source co-simulation framework “Framework for Network Co-Simulation” (FNCS), together with the decoupled simulation approach that links existing transmission and distribution dynamic simulators through FNCS. FNCS is a middleware interface and framework that manages the interaction and synchronization of the transmission and distribution simulators. Preliminary testing results show the validity and capability of the proposed open-source co-simulation framework and the decoupled co-simulation methodology.
Improved Mechanical Performance Fracture Properties and Reliability of Radical-Cured Thermosets
The aim of this study was to alter polymerization chemistry to improve network homogeneity in free-radical crosslinked systems. It was hypothesized that a reduction in heterogeneity of the network would lead to improved mechanical performance. Experiments and simulations were carried out to investigate the connection between polymerization chemistry, network structure and mechanical properties. Experiments were conducted on two different monomer systems - the first is a single monomer system, urethane dimethacrylate (UDMA), and the second is a two-monomer system consisting of bisphenol A glycidyl dimethacrylate (BisGMA) and triethylene glycol dimethacrylate (TEGDMA) in a ratio of 70/30 BisGMA/TEGDMA by weight. The methacrylate systems were crosslinked using traditional radical polymeriza- tion (TRP) with azobisisobutyronitrile (AIBN) or benzoyl peroxide (BPO) as an initiator; TRP systems were used as the control. The monomers were also cross-linked using activator regenerated by electron transfer atom transfer radical polymerization (ARGET ATRP) as a type of controlled radical polymerization (CRP). FTIR and DSC were used to monitor reac- tion kinetics of the systems. The networks were analyzed using NMR, DSC, X-ray diffraction (XRD), atomic force microscopy (AFM), and small angle X-ray scattering (SAXS). These techniques were employed in an attempt to quantify differences between the traditional and controlled radical polymerizations. While a quantitative methodology for characterizing net- work morphology was not established, SAXS and AFM have shown some promising initial results. Additionally, differences in mechanical behavior were observed between traditional and controlled radical polymerized thermosets in the BisGMA/TEGDMA system but not in the UDMA materials; this finding may be the result of network ductility variations between the two materials. Coarse-grained molecular dynamics simulations employing a novel model of the CRP reaction were carried out for the UDMA system, with parameters calibrated based on fully atomistic simulations of the UDMA monomer in the liquid state. Detailed metrics based on network graph theoretical approaches were implemented to quantify the bond network topology resulting from simulations. For a broad range of polymerization parameters, no discernible differences were seen between TRP and CRP UDMA simulations at equal conversions, although clear differences exist as a function of conversion. Both findings are consistent with experiments. Despite a number of shortcomings, these models have demonstrated the potential of molecular simulations for studying network topology in these systems.
Robustness, efficiency, and optimality in the Fenna-Matthews-Olson photosynthetic pigment-protein complex
Pigment-protein complexes (PPCs) play a central role in facilitating excitation energy transfer (EET) from light-harvesting antenna complexes to reaction centres in photosynthetic systems; understanding molecular organisation in these biological networks is key to developing better artificial light-harvesting systems. In this article, we combine quantum-mechanical simulations and a network-based picture of transport to investigate how chromophore organization and protein environment in PPCs impacts on EET efficiency and robustness. In a prototypical PPC model, the Fenna-Matthews-Olson (FMO) complex, we consider the impact on EET efficiency of both disrupting the chromophore network and changing the influence of (local and global) environmental dephasing. Surprisingly, we find a large degree of resilience to changes in both chromophore network and protein environmental dephasing, the extent of which is greater than previously observed; for example, FMO maintains EET when 50% of the constituent chromophores are removed, or when environmental dephasing fluctuations vary over two orders-of-magnitude relative to the in vivo system. We also highlight the fact that the influence of local dephasing can be strongly dependent on the characteristics of the EET network and the initial excitation; for example, initial excitations resulting in rapid coherent decay are generally insensitive to the environment, whereas the incoherent population decay observed following excitation at weakly coupled chromophores demonstrates a more pronounced dependence on dephasing rate as a result of the greater possibility of local exciton trapping. Finally, we show that the FMO electronic Hamiltonian is not particularly optimised for EET; instead, it is just one of many possible chromophore organisations which demonstrate a good level of EET transport efficiency following excitation at different chromophores. Overall, these robustness and efficiency characteristics are attributed to the highly connected nature of the chromophore network and the presence of multiple EET pathways, features which might easily be built into artificial photosynthetic systems.
DragonView: Toward Understanding Network Interference in Dragonfly-based Supercomputers
Acquiring and maintaining high performance computing systems represents a substantial, long term investment. Therefore, it is paramount to optimize their utilization in order to maximize the return on investment and the impact on science and engineering. In this context, network congestion and inter-job interference are a major challenge as they can lead to significant systemwide performance degregation. This is especially pertinent in shared interconnects such as the dragonfly network, in which resources are shared by multiple jobs. Since many large-scale applications are communication-bound, a few communication heavy applications can have a large impact on the performance of all jobs and decrease the overall system throughput. In this paper, we describe a web-based visual analytics environment to study congestion and inter-job interference on dragonfly networks. The system enables network architects, system administrators and application developers to explore the potential impact of machine configuration, job placement policies and routing algorithms by visualizing and comparing ensembles of simulated workloads and real world data. We focus on the design of the system and describe the challenges, design decisions and the final implementation. Finally, we present two detailed case studies of prototypical analysis sessions by our stakeholders aimed at exploring the implications of different workloads and machine configurations using ensembles of network simulations.