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At least 685 records · Page 38

Genome and time-of-day transcriptome of Wolffia australiana link morphological minimization with gene loss and less growth control

Rootless plants in the genus Wolffia are some of the fastest growing known plants on Earth. Wolffia have a reduced body plan, primarily multiplying through a budding type of asexual reproduction. Here, we generated draft reference genomes for Wolffia australiana (Benth.) Hartog & Plas, which has the smallest genome size in the genus at 357 Mb and has a reduced set of predicted protein-coding genes at about 15,000. Comparison between multiple high-quality draft genome sequences from W. australiana clones confirmed loss of several hundred genes that are highly conserved among flowering plants, including genes involved in root developmental and light signaling pathways. Wolffia has also lost most of the conserved nucleotide-binding leucine-rich repeat (NLR) genes that are known to be involved in innate immunity, as well as those involved in terpene biosynthesis, while having a significant overrepresentation of genes in the sphingolipid pathways that may signify an alternative defense system. Diurnal expression analysis revealed that only 13% of Wolffia genes are expressed in a time-of-day (TOD) fashion, which is less than the typical ~40% found in several model plants under the same condition. In contrast to the model plants Arabidopsis and rice, many of the pathways associated with multicellular and developmental processes are not under TOD control in W. australiana, where genes that cycle the conditions tested predominantly have carbon processing and chloroplast-related functions. The Wolffia genome and TOD expression data set thus provide insight into the interplay between a streamlined plant body plan and optimized growth.

59 BASIC BIOLOGICAL SCIENCES↗

Workhorse minimally empirical dispersion-corrected density functional with tests for weakly bound systems: r 2 SCAN + rVV 10

SCAN+rVV10 has been demonstrated to be a versatile van der Waals (vdW) density functional that delivers good predictions of both energetic and structural properties for many types of bonding. Recently, the r 2 SCAN functional was devised as a revised form of SCAN with improved numerical stability. In this work, we refit the rVV10 functional to optimize the r 2 SCAN+rVV10 vdW density functional and test its performance for molecular interactions and layered materials. Our molecular tests demonstrate that r 2 SCAN+rVV10 outperforms its predecessor SCAN+rVV10 in both efficiency (numerical stability) and accuracy. This good performance is also found in lattice-constant predictions. In comparison with benchmark results from higher-level theories or experiments, r 2 SCAN+rVV10 yields excellent interlayer binding energies and phonon dispersions for layered materials.

36 MATERIALS SCIENCE↗

Minimal one-dimensional model of bad metal behavior from fast particle-hole scattering

A strongly interacting plasma of linearly dispersing electron and hole excitations in two spatial dimensions (2D), also known as a Dirac fluid, can be captured by relativistic hydrodynamics and shares many universal features with other quantum critical systems. Here, we propose a one-dimensional (1D) model to capture key aspects of the 2D Dirac fluid while including lattice effects and being amenable to nonperturbative computation. When interactions are added to the Dirac-like 1D dispersion without opening a gap, we show that this kind of irrelevant interaction is able to preserve Fermi-liquid-like quasiparticle features while relaxing a zero-momentum charge current via collisions between particle-hole excitations, leading to resistivity that is linear in temperature via a mechanism previously discussed for large-diameter metallic carbon nanotubes. We further provide a microscopic lattice model and obtain numerical results via density-matrix renormalization group simulations, which support the above physical picture. The limits on such fast relaxation at strong coupling are of considerable interest because of the ubiquity of bad metals in experiments.

1-dimensional systems↗

Minimal production of prompt gravitational waves during reheating

The inflationary reheating phase begins when accelerated expansion ends. As all Standard Model particles are coupled to gravity, gravitational interactions will lead to particle production. This includes the thermal bath, dark matter, and gravitational radiation. Here, we compute the spectrum of gravitational waves from the inflaton condensate during the initial phase of reheating. As particular examples of inflation, we consider the Starobinsky model and T models, all of which are in good phenomenological agreement with cosmic microwave background anisotropy measurements. The T models are distinguished by the shape of the potential about its minimum and can be approximated by V ∼ ϕ k , where ϕ is the inflaton. Interestingly, the shape of the gravitational wave spectrum (when observed) can be used to distinguish among the models considered. As we show, the Starobinsky model and T models with k = 2 , provide very different spectra when compared to models with k = 4 or k > 4 . Observation of multiple harmonics in the spectrum can be interpreted as a direct measurement of the inflaton mass. Furthermore, the cutoff in frequency can be used to determine the reheating temperature. Published by the American Physical Society 2024

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Minimizing Selection Bias in Inclusive Jets in Heavy-Ion Collisions with Energy Correlators

The first-ever measurement of energy correlators within inclusive jets produced in heavy-ion collisions, revealed by the CMS Collaboration, shows a clear enhancement at large angles relative to the proton-proton (p-p) baseline. However, interpreting this enhancement is complicated due to selection bias from energy loss, which also distorts the energy correlator heavy-ion to p-p ratio in the hadronization region, hindering our understanding of parton/hadron dynamics in a colored medium. In this Letter, we introduce a new ratio of energy correlator observables that removes the leading effects of selection bias from the two-point energy correlator spectrum (E2C). PYTHIA and HERWIG simulations show that the impact of selection bias in the E2C is reduced by an order of magnitude, while sensitivity to any other medium modifications is retained. This quantity can be obtained directly from the experimental measurements presented by CMS, as illustrated in an accompanying note [C. Andres and J. Holguin, arXiv:2409.07526].

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗