Generative learning for forecasting the dynamics of high-dimensional complex systems
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Epithelial cells experience long lasting loads of different magnitudes and rates. How they adapt to these loads strongly impacts tissue health. Yet, much remains unknown about the evolution of cellular stress in response to sustained strain. Here, by subjecting cell pairs to sustained strain, we report a bimodal stress response, where in addition to the typically observed stress relaxation, a subset of cells exhibits a dynamic tensioning process with significant elevation in stress within 100 s, resembling active pulling-back in muscle fibers. Strikingly, the fraction of cells exhibiting tensioning increases with increasing strain rate. The tensioning response is accompanied by actin remodeling, and perturbation to actin abrogates it, supporting cell contractility’s role in the response. Collectively, our data show that epithelial cells adjust their tensional states over short timescales in a strain-rate dependent manner to adapt to sustained strains, demonstrating that the active pulling-back behavior could be a common protective mechanism against environmental stress.
Charge carriers in high-mobility organic thin-film transistors of alkylated dinaphtho-thienothiophene (C{sub 10}-DNTT) have been directly observed by field-induced electron spin resonance (FI-ESR) down to 4 K. FI-ESR spectra of π-electron hole carriers of C{sub 10}-DNTT exhibited clear anisotropy, indicating a highly organized end-on molecular orientation at the device interface. The intra-grain and inter-grain carrier motion were probed by the motional narrowing effect of the ESR spectra. The intra-grain motion was clearly observed even at 4 K, showing intrinsically high mobility of C{sub 10}-DNTT crystallites. On the other hand, significantly low activation energy of ∼10 meV for inter-grain carrier hopping, compared with pristine DNTT, was observed, which shows that the alkyl substitution drastically enhances the carrier mobility of DNTT system.
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Abstract not provided.
A theoretical framework which unifies the conventional Mori--Zwanzig formalism and the approximate Koopman learning of deterministic dynamical systems from noiseless observation is presented. In this framework, the Mori--Zwanzig formalism, developed in statistical mechanics to tackle the hard problem of construction of reduced-order dynamics for high-dimensional dynamical systems, can be considered as a natural generalization of the Koopman description of the dynamical system. We next show that, similar to the approximate Koopman learning methods, data-driven methods can be developed for the Mori--Zwanzig formalism with Mori's linear projection operator. We have developed two algorithms to extract the key operators, the Markov and the memory kernel, using time series of a reduced set of observables in a dynamical system. We have adopted the Lorenz `96 system as a test problem and solved for the above operators. These operators exhibit complex behaviors, which are unlikely to be captured by traditional modeling approaches in Mori--Zwanzig analysis. The nontrivial generalized fluctuation-dissipation relationship, which relates the memory kernel with the two-time correlation statistics of the orthogonal dynamics, was numerically verified as a validation of the solved operators. Here we present numerical evidence that the generalized Langevin equation, a key construct in the Mori--Zwanzig formalism, is more advantageous in predicting the evolution of the reduced set of observables than the conventional approximate Koopman operators.
Time-resolved temperature-jump using HEWL; please check the README file for more information about the datasets.
Multidimensional gradients of inorganic compounds influence microbial activity in diverse pristine and anthropogenically perturbed environments. Here, we suggest that high-throughput cultivation and genetics can be systematically applied to generate quantitative models linking gene function, microbial community activity, and geochemical parameters. Metal resistance determinants represent a uniquely universal set of parameters around which to study and evaluate microbial fitness because they represent a record of the environment in which all microbial life evolved. By cultivating microbial isolates and enrichments in laboratory gradients of inorganic ions, we can generate quantitative predictions of limits on microbial range in the environment, obtain more accurate gene annotations, and identify useful strategies for predicting and engineering the trajectory of natural ecosystems.
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As described in the previous reports we have been working on an apodized optical system for transverse beam profile measurements by means of imaging. The key issues of LDR imaging is properly managing diffraction effects within the optical system, which is proposed to accomplish by means of amplitude apodization. Shortly before the time of the last progress report we have finished manufacturing of several apodizing elements. We have completed mechanical design of our first apodized imaging system and have built its prototype on an optical bench. Since testing diagnostic equipment with beam is costly and is not always possible due to limited beam availability, it has been our intention to make as much preliminary testing and characterization on a test bench in the laboratory.
The Spiking/Processing Array (spARR) is a novel photonic focal plane that uses pixels which generate electronic spikes autonomously and without a clock. These spikes feed into a network of digital asynchronous processing elements or DAPES. By building a useful assemblage of DAPES, and connecting them together in the correct way, sophisticated signal processing can be accomplished within the focal plane. Autonomous self-resetting pixels (AsP) enable SPARR to generate electronic response with very small signals--as little as a single photon in the case of Geiger mode avalanche photodiodes to as few as several hundred photons for in-cmos photodetectors. These spiking pixels enable fast detector response, but do not draw as much continuous power as synchronous clocked designs. The spikes emitted by the pixels all have the same magnitude, the information from the scene is effectively encoded into the rate of spikes and the time at which the spike is emitted. The spiking pixels, having converted incident light into electronic spikes, supply the spikes to a network of digital asynchronous processors. These are small state machines which respond to the spikes arriving at their input ports by either remaining unchanged or updating their internal state and possibly emitting a spike on one or more output ports. We show a design that accomplishes the sophisticated signal processing of a Haar spatial wavelet transform with spatial-spectral whitening. We furthermore show how this design results in a data streams which support imaging and transient optical source detection. Two simulators support this analysis: SPICE and sparrow. The CMOS SPICE simulator Cadence provides accurate CMOs design with accounting for effects of circuit parasitics throughout layout, accurate timing, and accurate energy consumption estimates. To more rapidly assess larger networks with more pixels, sparrow is a custom discrete event simulator that supports the non-homogeneous Poisson processes that lie behind photoelectric interaction. Sparrow is a photon-exact simulator that nevertheless performs SPARR system simulator for large-scale systems.
Abstract not provided.
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