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At least 685 records · Page 38

In Situ Visualization for Computational Science

In situ visualization, i.e., visualizing simulation data as it is generated, is an emerging processing paradigm in response to trends in the area of high-performance computing. This paradigm holds great promise in its ability to access increased spatio-temporal resolution and leverage extensive computational power. However, the paradigm is also widely viewed as limiting when it comes to exploration-oriented use cases and further will require visualization systems to become more and more complicated and constrained. Additionally, there are many open research topics with in situ visualization. The Dagstuhl seminar 18271 "In Situ Visualization for Computational Science" brought together researchers and practitioners from three communities (computational science, high-performance computing, and scientific visualization) to share interesting findings, to identify lines of open research, and to determine a medium-term research agenda that addresses the most pressing problems. This report summarizes the outcomes and findings of the seminar.

Bauer, Andy↗

Stanford/NASA-Ames Center of Excellence in model-based human performance

The human operator plays a critical role in many aeronautic and astronautic missions. The Stanford/NASA-Ames Center of Excellence in Model-Based Human Performance (COE) was initiated in 1985 to further our understanding of the performance capabilities and performance limits of the human component of aeronautic and astronautic projects. Support from the COE is devoted to those areas of experimental and theoretical work designed to summarize and explain human performance by developing computable performance models. The ultimate goal is to make these computable models available to other scientists for use in design and evaluation of aeronautic and astronautic instrumentation. Within vision science, two topics have received particular attention. First, researchers did extensive work analyzing the human ability to recognize object color relatively independent of the spectral power distribution of the ambient lighting (color constancy). The COE has supported a number of research papers in this area, as well as the development of a substantial data base of surface reflectance functions, ambient illumination functions, and an associated software package for rendering and analyzing image data with respect to these spectral functions. Second, the COE supported new empirical studies on the problem of selecting colors for visual display equipment to enhance human performance in discrimination and recognition tasks.

Wandell, Brian A.↗

QuAIL Tools for Benchmarking, Analysis and Quantum Algorithm Development

HybridQ and PySA are open-source tools developed by NASA to support benchmarking, analysis and quantum algorithm development in areas such as simulation, optimization and machine learning. These tools leverage classical hardware acceleration via high-performance computing CPU and GPU architectures and support high-performance computing. HybridQ is a highly extensible platform designed to provide a common framework to integrate multiple state-of-the-art techniques to simulate large scale quantum circuits. PySA is an extensible platform to optimize a classical cost function. We provide an outline of each of these open-source tools and highlight projects using each of these tools in contexts of simulation, optimization and machine learning.

Quantum Computing↗

A Queue Simulation Tool for a High Performance Scientific Computing Center

The NASA Center for Computational Sciences (NCCS) at the Goddard Space Flight Center provides high performance highly parallel processors, mass storage, and supporting infrastructure to a community of computational Earth and space scientists. Long running (days) and highly parallel (hundreds of CPUs) jobs are common in the workload. NCCS management structures batch queues and allocates resources to optimize system use and prioritize workloads. NCCS technical staff use a locally developed discrete event simulation tool to model the impacts of evolving workloads, potential system upgrades, alternative queue structures and resource allocation policies.

Spear, Carrie↗

High fidelity simulation and analysis of liquid jet atomization in a gaseous crossflow at intermediate Weber numbers

Recent advances in numerical methods coupled with the substantial enhancements in computing power and the advent of high performance computing have presented first principle, high fidelity simulation as a viable tool in the prediction and analysis of spray atomization processes. The credibility and potential impact of such simulations, however, has been hampered by the relative absence of detailed validation against experimental evidence. The numerical stability and accuracy challenges arising from the need to simulate the high liquid-gas density ratio across the sharp interfaces encountered in these flows are key reasons for this. In this work we challenge this status quo by presenting a numerical model able to deal with these challenges, employing it in simulations of liquid jet in crossflow atomization and performing extensive validation of its results against a carefully executed experiment with detailed measurements in the atomization region. We then proceed to the detailed analysis of the flow physics. The computational model employs the coupled level set and volume of fluid approach to directly capture the spatiotemporal evolution of the liquid-gas interface and the sharp-interface ghost fluid method to stably handle high liquid-air density ratio. Adaptive mesh refinement and Lagrangian droplet models are shown to be viable options for computational cost reduction. Moreover, high performance computing is leveraged to manage the computational cost. The experiment selected for validation eliminates the impact of inlet liquid and gas turbulence and focuses on the impact of the crossflow aerodynamic forces on the atomization physics. Validation is demonstrated by comparing column surface wavelengths, deformation, breakup locations, column trajectories and droplet sizes, velocities, and mass rates for a range of intermediate Weber numbers. Analysis of the physics is performed in terms of the instability and breakup characteristics and the features of downstream flow recirculation, and vortex shedding. Formation of “Λ” shape windward column waves is observed and explained by the combined upward and lateral surface motion. The existence of Rayleigh-Taylor instability as the primary mechanism for the windward column waves is verified for this case by comparing wavelengths from the simulations to those predicted by linear stability analyses. Physical arguments are employed to postulate that the type of instability manifested may be related to conditions such as the gas Weber number and the inlet turbulence level. The decreased column wavelength with increasing Weber number is found to cause enhanced surface stripping and early depletion of liquid core at higher Weber number. A peculiar “three-streak-two-membrane” liquid structure is identified at the lowest Weber number and explained as the consequence of the symmetric recirculation zones behind the jet column. It is found that the vortical flow downstream of the liquid column resembles a von Karman vortex street and that the coupling between the gas flow and droplet transport is weak for the conditions explored.

42 ENGINEERING↗

On evaluating the performability of degradable computing systems

If the performance of a computing system is 'degradable', performance and reliability issues must be dealt with simultaneously in the process of evaluating system effectiveness. For this purpose, a unified measure, called 'performability', is introduced and the foundations of performability modeling and evaluation are established. A critical step in the modeling process is the introduction of a 'capability function' which relates low-level system behavior to user-oriented performance levels. A hierarchical modeling scheme is used to formulate the capability function and capability is used, in turn, to evaluate performability. These techniques are then illustrated for a specific application: the performability evaluation of an aircraft computer in the environment of an air transport mission.

Meyer, J. F.↗

Parametric instabilities in computer system performance prediction

Results found by applying a predictive model to a particular system (University of Maryland Computer Center's Univak 1100/42) are presented. Given the correct model parameters, the system performance from the model closely matches the actual system observed performance. However, the major application of system modeling is the prediction of performance when the system configuration is altered. The prediction results presented are disappointing but useful with the major problem traced to parametric instabilities. The interactions between the user demands, overhead activities, and device characteristics must be considered in developing system models.

Dowdy, L. W.↗

Adiabatic Quantum Computation Applied to Deep Learning Networks

Training deep learning networks is a difficult task due to computational complexity, and this is traditionally handled by simplifying network topology to enable parallel computation on graphical processing units (GPUs). However, the emergence of quantum devices allows reconsideration of complex topologies. We illustrate a particular network topology that can be trained to classify MNIST data (an image dataset of handwritten digits) and neutrino detection data using a restricted form of adiabatic quantum computation known as quantum annealing performed by a D-Wave processor. We provide a brief description of the hardware and how it solves Ising models, how we translate our data into the corresponding Ising models, and how we use available expanded topology options to explore potential performance improvements. Although we focus on the application of quantum annealing in this article, the work discussed here is just one of three approaches we explored as part of a larger project that considers alternative means for training deep learning networks. The other approaches involve using a high performance computing (HPC) environment to automatically find network topologies with good performance and using neuromorphic computing to find a low-power solution for training deep learning networks. Our results show that our quantum approach can find good network parameters in a reasonable time despite increased network topology complexity; that HPC can find good parameters for traditional, simplified network topologies; and that neuromorphic computers can use low power memristive hardware to represent complex topologies and parameters derived from other architecture choices.

97 MATHEMATICS AND COMPUTING↗

Extreme-scale Algorithms and Solver Resilience

A widening gap exists between the peak performance of high-performance computers and the performance achieved by complex applications running on these platforms. Over the next decade, extreme-scale systems will present major new challenges to algorithm development that could amplify this mismatch in such a way that it prevents the productive use of future DOE Leadership computers due to the following; Extreme levels of parallelism due to multicore processors; An increase in system fault rates requiring algorithms to be resilient beyond just checkpoint/restart; Complex memory hierarchies and costly data movement in both energy and performance; Heterogeneous system architectures (mixing CPUs, GPUs, etc.); and Conflicting goals of performance, resilience, and power requirements.

97 MATHEMATICS AND COMPUTING↗

Enabling Scalable VQE Simulation on Leading HPC Systems

Large-scale simulations of quantum circuits pose significant challenges, especially in the context of quantum chemistry, due to the number of qubits, circuit depth, and the number of circuits needed per problem. High-performance computing (HPC) systems offer massive computational capabilities that could help overcome these obstacles. We developed a high-performance quantum circuit simulator, called NWQ-Sim, and demonstrate its capability to simulate large quantum chemistry problems on NERSC's Perlmutter supercomputer. Integrating NWQ-Sim with XACC, we have executed QPE and VQE algorithms for downfolded quantum chemistry systems at unprecedented scales. Our work demonstrates the potential of leveraging HPC resources to advance quantum chemistry and other applications of near-term quantum devices.

Wang, Meng↗

Field Programmable Gate Arrays for Enhancing the Speed and Energy Efficiency of Quantum Dynamics Simulations

We present the first application of field programmable gate arrays (FPGAs) as new, customizable hardware architectures for carrying out fast and energy-efficient quantum dynamics simulations of large chemical/material systems. Instead of tailoring the software to fixed hardware, which is the typical case for writing quantum chemistry code for central processing units (CPUs) and graphics processing units (GPUs), FPGAs allow us to directly customize the underlying hardware (even at the level of specific electrical signals in the circuit) to give a truly optimized computational performance for quantum dynamics calculations. By offloading the most intensive and repetitive calculations onto an FPGA, we show that the computational performance of our real-time electron dynamics calculations can even exceed that of optimized commercial mathematical libraries running on high-performance GPUs. In addition to this impressive computational speedup, we show that FPGAs are immensely energy-efficient and consume 4 times less energy than modern GPU or CPU architectures. These energy savings are a practical and important metric for supercomputing centers (many of which exceed over $1 million in power costs alone), as exascale computing capabilities become more widespread and commonplace. Taken together, the implementation techniques and performance metrics of our study demonstrate that FPGAs could play a promising role in upcoming quantum chemistry and materials science applications, particularly for the acceleration and energy-efficient execution of quantum dynamics calculations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

SAGIPS: a physics-inspired scalable asynchronous generative inverse-problem solver

Abstract Solving large-scale inverse problems using deep-learning algorithms have become an essential part of modern research and industrial applications. The complexity of the underlying inverse problem may require the utilization of high performance computing systems which poses a challenge on the algorithmic design of the inverse problem solver. Most deep learning algorithms require, due to their design, custom parallelization techniques in order to be resource efficient while showing a reasonable convergence. In this paper we introduce a S calable A synchronous G enerative I nverse P roblem S olver (SAGIPS) on high-performance computing systems. We present a workflow that utilizes an asynchronous ring-allreduce algorithm to transfer the gradients of the generator network across multiple GPUs. Experiments with a scientific proxy application demonstrate that SAGIPS shows near linear weak scaling, together with a convergence quality that is comparable to traditional methods. The approach presented here allows leveraging Generative Adverserial Network across multiple GPUs, promising advancements in solving complex inverse problems at scale.

97 MATHEMATICS AND COMPUTING↗

Phase Field Simulations of Microstructure Evolution in IN718 using a Surrogate Ni–Fe–Nb Alloy during Laser Powder Bed Fusion

The solidification microstructure in IN718 during additive manufacturing was modeled using phase field simulations. The novelty of the research includes the use of a surrogate Ni–Fe–Nb alloy that has the same equilibrium solidification range as IN718 as the model system for phase field simulations, the integration of the model alloy thermodynamics with the phase field simulations, and the use of high-performance computing tools to perform the simulations with a high enough spatial resolution for realistically capturing the dendrite morphology and the level of microsegregation seen under additive manufacturing conditions. Heat transfer and fluid flow models were used to compute the steady state temperature gradient and an average value of the solid-liquid (s-l) interface velocity that were used as input for the phase field simulations. The simulations show that the solidification morphology is sensitive to the spacing between the columnar structures. Spacing narrower than a critical value results in continued growth of a columnar microstructure, while above a critical value the columnar structure evolves into a columnar dendritic structure through the formation of secondary arms. These results are discussed in terms of the existing columnar to dendritic transition (CDT) theories. The measured interdendritic Nb concentration, the primary and secondary arm spacing is in reasonable agreement with experimental measurements performed on the nickel-base superalloy IN718.

36 MATERIALS SCIENCE↗

Towards understanding HPC users and systems: A NERSC case study

High performance computing (HPC) scheduling landscape currently faces new challenges due to thechanges in the workload. Previously, HPC centers were dominated by tightly coupled MPI jobs. HPCworkloads increasingly include high-throughput, data-intensive, and stream-processing applications. Asa consequence, workloads are becoming more diverse at both application and job levels, posing newchallenges to classical HPC schedulers. There is a need to understand the current HPC workloads andtheir evolution to facilitate informed future scheduling research and enable efficient scheduling in futureHPC systems.In this paper, we present a methodology to characterize workloads and assess their heterogeneity,at a particular time period and its evolution over time. We apply this methodology to the workloads ofthree systems (Hopper, Edison, and Carver) at the National Energy Research Scientific Computing Center(NERSC). We present the resulting characterization of jobs, queues, heterogeneity, and performance thatincludes detailed information of a year of workload (2014) and evolution through the systems’ lifetime(2010–2014).

Rodrigo, Gonzalo P.↗

Machine-Learning Accelerated Studies of Materials with High Performance and Edge Computing

In the studies of materials, experimental measurements often serve as the reference to verify physics theory and modeling; while theory and modeling provide a fundamental understanding of the physics and principles behind. However, the interactions and cross validation between them have long been a challenge even to-date. Not only that inferring a physics model from experimental data is itself a difficult inverse problem, another major challenge is the orders-of-magnitude longer wall-clock time required to carry out high-fidelity computer modeling to match the timescale of experiments. We envisage that by combining high performance computing, data science, and edge computing technology, the current predicament can be alleviated, and a new paradigm of data-driven physics research will open up. For example, we can accelerate computer simulations by first performing the large-scale modeling on high performance computers and train a machine-learned surrogate model. This computationally inexpensive surrogate model can then be transferred to the computing units residing closely to the experimental facilities to perform high-fidelity simulations at a much higher throughout. The model will also be more amenable to analyzing and validating experimental observations in comparable time scales at a much lower computational cost. Further integration of these accelerated computer simulations with an outer machine learning loop can also inform and direct future experiments, while making the inverse problem of physics model inference more tractable. We will demonstrate a proof-of-concept by using a quantum Monte Carlo application, Dynamical Cluster Approximation (DCA++), to machine-learn a surrogate model and accelerate the study of quantum correlated materials.

Li, Ying Wai↗

Computer Simulation Performed for Columbia Project Cooling System

This demo shows a high-fidelity simulation of the air flow in the main computer room housing the Columbia (10,024 intel titanium processors) system. The simulation asseses the performance of the cooling system and identified deficiencies, and recommended modifications to eliminate them. It used two in house software packages on NAS supercomputers: Chimera Grid tools to generate a geometric model of the computer room, OVERFLOW-2 code for fluid and thermal simulation. This state-of-the-art technology can be easily extended to provide a general capability for air flow analyses on any modern computer room. Columbia_CFD_black.tiff

Ahmad, Jasim↗

An Efficient Storage-Driven Machine Learning Model for Performance in the Era of Multimodal Scientific Data

Scientific workflows are increasingly relying on machine learning (ML), simulation, and hybrid techniques to predict, understand, and optimize the behavior of complex experiments. High-performance computing has greatly improved researchers’ ability to acquire diverse data modalities in these workflows. Recent studies suggest that the performance of machine learning models can be improved by integrating data from various sources. Unfortunately, these workloads pose unprecedent pressure on the network storage to meet the demands associated with accessing these multimodal data. To mitigate the impact of intensive IO, we propose a solution that utilizes a multi-tier High-Performance Computing (HPC) distributed storage and data processing framework, placing computation where the data resides for better performance. By adopting this project, the scientific community will gain new opportunities to explore multimodal storage-driven possibilities, integrating multiple scientific data sources with advanced streaming frameworks. Additionally, our framework effectively utilizes computing resources and bridges the gaps identified by HPC experts. Our proposed approach tackles scalability and persistence challenges by leveraging native persistency, which has posed difficulties in traditional approaches. Furthermore, we seek to enhance fault-tolerance and load-balance of computations by leveraging real-time streaming in diverse scientific computing environments, thereby propelling advanced scientific computing research into the next generation.

97 MATHEMATICS AND COMPUTING↗