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NASA NTRS2011

Optimization of PMA-PCR Protocol for Viability Detection of Pathogens

This presented study demonstrates the need that PMA-PCR can be used to capture the loss of viability of a sample that is much more specific and time-efficient than alternative methods. This protocol is particularly useful in scenarios in which sterilization treatments may inactivate organisms but not degrade their DNA. The use of a PCR-based method of pathogen detection without first inactivating the DNA of nonviable cells will potentially lead to false positives. The loss of culturability, by heat-killing, did not prevent amplified PCR products, which supports the use of PMA to prevent amplification and differentiate between viable and dead cells. PMA was shown to inhibit the amplification of DNA by PCR in vegetative cells that had been heat-killed.

propidium monoazide (PMA)↗

NASA NTRS2012

Eurasian Heat Waves: Mechanisms and Predictability

This study uses the NASA MERRA reanalysis and GEOS 5 model simulations to examine the causes of Eurasian heat waves including the recent extreme events that occurred in Europe during 2003 and in Russia during 2010. The focus is on the warm season and the part of the Eurasian continent that extends north of about 40oN, or roughly to the north of the mean upper tropospheric jet stream. The results show that such extreme events are an amplification of natural patterns of atmospheric variability that develop over the Eurasian continent as a result of internal atmospheric forcing. The amplification occurs when the wave occasionally becomes locked in place for several weeks to months resulting in extreme heat and drying with the location depending on the phase of the upper atmospheric wave. An ensemble of very long GEOS-S model simulations (spanning the 20th century) forced with observed SST and greenhouse gases show that the model is capable of generating very similar heat waves, and that they have become more intense in the last thirty years as a result of the overall warming of the Asian continent. Sensitivity experiments with perturbed initial conditions indicate that these events have limited predictability.

Wang, Hailan↗

NASA NTRS2012

On the Causes of and Long Term Changes in Eurasian Heat Waves

The MERRA reanalysis, other observations, and the GEOS-S model have been used to diagnose the causes of Eurasian heat waves including the recent extreme events that occurred in Europe during 2003 and in Russia during 2010. The results show that such extreme events are an amplification of natural patterns of atmospheric variability (in this case a particular large-scale atmospheric planetary wave) that develop over the Eurasian continent as a result of internal atmospheric forcing. The amplification occurs when the wave occasionally becomes locked in place for several weeks to months resulting in extreme heat and drying with the location depending on the phase of the upper atmospheric wave. Model experiments suggest that forcing from both the ocean (SST) and land playa role phase-locking the waves. An ensemble of very long GEOS-S model simulations (spanning the 20th century) forced with observed SST and greenhouse gases show that the model is capable of generating very similar heat waves, and that they have become more extreme in the last thirty years as a result of the overall warming of the Asian continent.

Schubert, Siegfried↗

NASA NTRS2013

Detection of Only Viable Bacterial Spores Using a Live/Dead Indicator in Mixed Populations

This method uses a photoaffinity label that recognizes DNA and can be used to distinguish populations of bacterial cells from bacterial spores without the use of heat shocking during conventional culture, and live from dead bacterial spores using molecular-based methods. Biological validation of commercial sterility using traditional and alternative technologies remains challenging. Recovery of viable spores is cumbersome, as the process requires substantial incubation time, and the extended time to results limits the ability to quickly evaluate the efficacy of existing technologies. Nucleic acid amplification approaches such as PCR (polymerase chain reaction) have shown promise for improving time to detection for a wide range of applications. Recent real-time PCR methods are particularly promising, as these methods can be made at least semi-quantitative by correspondence to a standard curve. Nonetheless, PCR-based methods are rarely used for process validation, largely because the DNA from dead bacterial cells is highly stable and hence, DNA-based amplification methods fail to discriminate between live and inactivated microorganisms. Currently, no published method has been shown to effectively distinguish between live and dead bacterial spores. This technology uses a DNA binding photoaffinity label that can be used to distinguish between live and dead bacterial spores with detection limits ranging from 109 to 102 spores/mL. An environmental sample suspected of containing a mixture of live and dead vegetative cells and bacterial endospores is treated with a photoaffinity label. This step will eliminate any vegetative cells (live or dead) and dead endospores present in the sample. To further determine the bacterial spore viability, DNA is extracted from the spores and total population is quantified by real-time PCR. The current NASA standard assay takes 72 hours for results. Part of this procedure requires a heat shock step at 80 degC for 15 minutes before the sample can be plated. Using a photoaffinity label would remove this step from the current assay as the label readily penetrates both live and dead bacterial cells. Secondly, the photoaffinity label can only penetrate dead bacterial spores, leaving behind the viable spore population. This would allow for rapid bacterial spore detection in a matter of hours compared to the several days that it takes for the NASA standard assay.

Behar, Alberto E.↗

NASA NTRS2013

Design, Construction, and Testing of Lightweight X-ray Mirror Modules

Lightweight and high resolution optics are needed for future space-based X-ray telescopes to achieve advances in high-energy astrophysics. The Next Generation X-ray Optics (NGXO) team at NASA GSFC is nearing mission readiness for a 10 arc-second Half Power Diameter (HPD) slumped glass mirror technology while laying the groundwork for a future 1-2 arc-second technology based on polished silicon mirrors. Technology Development Modules (TDMs) have been designed, fabricated, integrated with mirrors segments, and extensively tested to demonstrate technology readiness. Tests include X-ray performance, thermal vacuum, acoustic load, and random vibration. The thermal vacuum and acoustic load environments have proven relatively benign, while the random vibration environment has proven challenging due to large input amplification at frequencies above 500 Hz. Epoxy selection, surface preparation, and larger bond area have increased bond strength while vibration isolation has decreased vibration amplification allowing for space launch requirements to be met in the near term. The next generation of TDMs, which demonstrates a lightweight structure supporting more mirror segments, is currently being fabricated. Analysis predicts superior performance characteristics due to the use of E-60 Beryllium-Oxide Metal Matrix Composite material, with only a modest cost increase. These TDMs will be larger, lighter, stiffer, and stronger than the current generation. Preliminary steps are being taken to enable mounting and testing of 1-2 arc-second mirror segments expected to be available in the future. A Vertical X-ray Test Facility (VXTF) will minimize module gravity distortion and allow for less constrained mirror mounts, such as fully kinematic mounts. Permanent kinematic mounting into a modified TDM has been demonstrated to achieve 2 arc-second level distortion free alignment.

contruction↗

NASA NTRS2013

On the Origin of Multidecadal to Centennial Greenland Temperature Anomalies Over the Past 800 yr

The surface temperature of the Greenland ice sheet is among the most important climate variables for assessing how climate change may impact human societies due to its association with sea level rise. However, the causes of multidecadal-to-centennial temperature changes in Greenland temperatures are not well understood, largely owing to short observational records. To examine these, we calculated the Greenland temperature anomalies (GTA[G−NH]) over the past 800 yr by subtracting the standardized northern hemispheric (NH) temperature from the standardized Greenland temperature. This decomposes the Greenland temperature variation into background climate (NH); polar amplification; and regional variability (GTA[G−NH]). The central Greenland polar amplification factor as expressed by the variance ratio Greenland/NH is 2.6 over the past 161 yr, and 3.3-4.2 over the past 800 yr. The GTA[G−NH] explains 31-35%of the variation of Greenland temperature in the multidecadal-to-centennial time scale over the past 800 yr. We found that the GTA[G−NH] has been influenced by solar-induced changes in atmospheric circulation patterns such as those produced by the North Atlantic Oscillation/Arctic Oscillation (NAO/AO). Climate modeling and proxy temperature records indicate that the anomaly is also likely linked to solar-paced changes in the Atlantic meridional overturning circulation (AMOC) and associated changes in northward oceanic heat transport.

Kobashi, T.↗

NASA NTRS2015

A Model for Jet-Surface Interaction Noise Using Physically Realizable Upstream Turbulence Conditions

This paper is a continuation of previous work in which a generalized Rapid Distortion Theory (RDT) formulation was used to model low-frequency trailing-edge noise. The research was motivated by proposed next-generation aircraft configurations where the exhaust system is tightly integrated with the airframe. Data from recent experiments at NASA on the interaction between high-Reynolds-number subsonic jet flows and an external flat plate showed that the power spectral density (PSD) of the far-field pressure underwent considerable amplification at low frequencies. For example, at the 900 observation angle, the low-frequency noise could be as much as 10dB greater than the jet noise itself. In this paper, we present predictions of the noise generated by the interaction of a rectangular jet with the trailing edge of a semi-infinite flat plate. The calculations are based on a formula for the acoustic spectrum of this noise source derived from an exact formal solution of the linearized Euler equations involving (in this case) one arbitrary convected scalar quantity and a Rayleigh equation Green's function. A low-frequency asymptotic approximation for the Green's function based on a two-dimensional mean flow is used in the calculations along with a physically realizable upstream turbulence spectrum, which includes a finite de-correlation region. Numerical predictions, based on three-dimensional RANS solutions for a range of subsonic acoustic Mach number jets and nozzle aspect ratios are compared with experimental data. Comparisons of the RANS results with flow data are also presented for selected cases. We find that a finite decorrelation region increases the low-frequency algebraic decay (the low frequency "rolloff") of the acoustic spectrum with angular frequency thereby producing much closer agreement with noise data for Strouhal numbers less than 0.1. Secondly, the large-aspectratio theory is able to predict the low-frequency amplification due to the jet-edge interaction reasonably well, even for moderate aspect ratio nozzles. We show also that the noise predictions for smaller aspect ratio jets can be fine-tuned using the appropriate RANS-based mean flow and turbulence properties.

Jet↗

NASA NTRS2015

A Model for Jet-Surface Interaction Noise Using Physically Realizable Upstream Turbulence Conditions

Aircraft↗

NASA NTRS2016

A Model for Jet-Surface Interaction Noise Using Physically Realizable Upstream Turbulence Conditions

This paper is a continuation of previous work in which a generalized Rapid Distortion Theory (RDT) formulation was used to model low-frequency trailing-edge noise. The research was motivated by proposed next-generation aircraft configurations where the exhaust system is tightly integrated with the airframe. Data from recent experiments at NASA on the interaction between high-Reynolds-number subsonic jet flows and an external flat plate showed that the power spectral density (PSD) of the far-field pressure underwent considerable amplification at low frequencies. For example, at the 90deg observation angle, the low-frequency noise could be as much as 10 dB greater than the jet noise itself. In this paper, we present predictions of the noise generated by the interaction of a rectangular jet with the trailing edge of a semi-infinite flat plate. The calculations are based on a formula for the acoustic spectrum of this noise source derived from an exact formal solution of the linearized Euler equations involving (in this case) one arbitrary convected scalar quantity and a Rayleigh equation Green's function. A low-frequency asymptotic approximation for the Green's function based on a two-dimensional mean flow is used in the calculations along with a physically realizable upstream turbulence spectrum, which includes a finite decorrelation region. Numerical predictions of the sound field, based on three-dimensional RANS solutions to determine the mean flow, turbulent kinetic energy and turbulence length and time scales, for a range of subsonic acoustic Mach number jets and nozzle aspect ratios are compared with experimental data. Comparisons of the RANS results with flow data are also presented for selected cases. We find that a finite decorrelation region in the turbulence spectrum increases the low-frequency algebraic decay (the low frequency "roll-off") of the acoustic spectrum with angular frequency thereby producing much closer agreement with noise data for Strouhal numbers less than 0.1. Secondly, the large-aspect-ratio theory is able to predict the low-frequency amplification due to the jet-edge interaction reasonably well, even for moderate aspect ratio nozzles. We show also that the noise predictions for smaller aspect ratio jets can be fine-tuned using the appropriate RANS-based mean flow and turbulence properties.

Jet↗

NASA NTRS2015

Secondary Instability of Stationary Crossflow Vortices in Mach 6 Boundary Layer Over a Circular Cone

Hypersonic boundary layer flows over a circular cone at moderate incidence can support strong crossflow instability. Due to more efficient excitation of stationary crossflow vortices by surface roughness, such boundary layer flows may transition to turbulence via rapid amplification of the high-frequency secondary instabilities of finite amplitude stationary crossflow vortices. The amplification characteristics of these secondary instabilities are investigated for crossflow vortices generated by an azimuthally periodic array of roughness elements over a 7-degree half-angle circular cone in a Mach 6 free stream. Depending on the local amplitude of the stationary crossflow mode, the most unstable secondary disturbances either originate from the second (i.e., Mack) mode instabilities of the unperturbed boundary layer or correspond to genuine secondary instabilities that reduce to stable disturbances at sufficiently small amplitudes of the stationary crossflow vortex. The predicted frequencies of dominant secondary disturbances are similar to those measured during wind tunnel experiments at Purdue University and the Technical University of Braunschweig, Germany.

Boundary layer flow↗

NASA NTRS2016

Influence of Stationary Crossflow Modulation on Secondary Instability

A likely scenario for swept wing transition on subsonic aircraft with natural laminar flow involves the breakdown of stationary crossflow vortices via high frequency secondary instability. A majority of the prior research on this secondary instability has focused on crossflow vortices with a single dominant spanwise wavelength. This paper investigates the effects of the spanwise modulation of stationary crossflow vortices at a specified wavelength by a subharmonic stationary mode. Secondary instability of the modulated crossflow pattern is studied using planar, partial-differential-equation based eigenvalue analysis. Computations reveal that weak modulation by the first subharmonic of the input stationary mode leads to mode splitting that is particularly obvious for Y-type secondary modes that are driven by the wall-normal shear of the basic state. Thus, for each Y mode corresponding to the fundamental wavelength of results in unmodulated train of crossflow vortices, the modulated flow supports a pair of secondary modes with somewhat different amplification rates. The mode splitting phenomenon suggests that a more complex stationary modulation such as that induced by natural surface roughness would yield a considerably richer spectrum of secondary instability modes. Even modest levels of subharmonic modulation are shown to have a strong effect on the overall amplification of secondary disturbances, particularly the Z-modes driven by the spanwise shear of the basic state. Preliminary computations related to the nonlinear breakdown of these secondary disturbances provide interesting insights into the process of crossflow transition in the presence of the first subharmonic of the dominant stationary vortex.

Vortex structure↗

NASA NTRS2018

Nonlinear Evolution and Breakdown of Azimuthally Compact Crossflow Vortex Pattern over a Yawed Cone

Hypersonic boundary-layer flows over a circular cone at moderate angle of incidence can support strong crossflow instability in between the windward and leeward rays on the plane of symmetry. Due to the more efficient excitation of stationary crossflow vortices by surface roughness, a possible path to transition in such flows corresponds to rapid amplification of the high-frequency secondary instabilities of finite amplitude stationary crossflow vortices. In the present paper, the previous analyses of crossflow instability over a 7- degree half-angle, yawed circular cone in a Mach 6 free stream have been extended to the nonlinear evolution of azimuthally localized crossflow vortex packets and the amplification characteristics and nonlinear breakdown of high-frequency secondary instabilities associated with those packets. A comparison between plane marching PSE and direct Navier-Stokes simulations (DNS) reveals favorable agreement in regard to mode shapes, most amplified disturbance frequencies, and N-factor evolution. In contrast, the quasi-parallel predictions are found to result in severe underprediction of the N-factors. The direct numerical simulations also indicate that the breakdown of secondary instabilities in a 3D hypersonic boundary layer shares certain common features with the previous computations of crossflow transition over subsonic swept wings.

Vortex structure↗

NASA NTRS2018

Nosetip Bluntness Effects on Transition at Hypersonic Speeds: Experimental and Numerical Analysis Under NATO STO AVT-240

The existing database of transition measurements in hypersonic ground facilities has established that the onset of boundary layer transition over a circular cone at zero angle of attack shifts downstream as the nosetip bluntness is increased with respect to a sharp cone. However, this trend is reversed at sufficiently large values of the nosetip Reynolds number, so that the transition onset location eventually moves upstream with a further increase in nosetip bluntness. This transition reversal phenomenon, which cannot be explained on the basis of linear stability theory, was the focus of a collaborative investigation under the NATO STO group AVT-240 on Hypersonic Boundary-Layer Transition Prediction. The current paper provides an overview of that effort, which included wind tunnel measurements in three different facilities and theoretical analysis related to modal and nonmodal amplification of boundary layer disturbances. Because neither first and second-mode waves nor entropy-layer instabilities are found to be substantially amplified to initiate transition at large bluntness values, transient (i.e., nonmodal) disturbance growth has been investigated as the potential basis for a physics-based model for the transition reversal phenomenon. Results of the transient growth analysis indicate that disturbances that are initiated within the nosetip or in the vicinity of the juncture between the nosetip and the frustum can undergo relatively significant nonmodal amplification and that the maximum energy gain increases nonlinearly with the nose radius of the cone. This finding does not provide a definitive link between transient growth and the onset of transition, but it is qualitatively consistent with the experimental observations that frustum transition during the reversal regime was highly sensitive to wall roughness, and furthermore, was dominated by disturbances that originated near the nosetip.

Numerical analysis↗

NASA NTRS2019

Evidence of Strong Contributions from Mixed-Phase Clouds to Arctic Climate Change

Underestimation of the proportion of supercooled liquid in mixed‐phase clouds in climate models has called into question its impact on Arctic climate change. We show that correcting for this bias in the CESM model can either enhance or reduce Arctic amplification depending on the microphysical characteristics of the clouds as a corollary to the cloud phase feedback. Replacement of ice with liquid in the cloud phase feedback results in more downward longwave radiation, which is effectively trapped as heat at the surface in the Arctic due to its unique stable stratification conditions, and this ultimately leads to a more positive lapse rate feedback. The larger the ice particles are to begin with, the stronger Arctic amplification becomes due to the lower precipitation efficiency of liquid droplets compared to ice crystals. Our results emphasize the importance of realistic representations of microphysical processes in mixed‐phase clouds, particularly in the Arctic.

Arctic↗

NASA NTRS2017

Instability Wave-Streak Interactions in a Supersonic Boundary Layer

Optimal initial conditions for transient growth in a two-dimensional boundary layer flow correspond to stationary, counter-rotating vortices that subsequently develop into streamwise elongated streaks, which are characterized by an alternating pattern of low and high streamwise velocity. For incompressible flows, previous studies have shown that boundary layer modulation due to streaks below a threshold amplitude level can stabilize the Tollmien-Schlichting instability waves, resulting in a delay in the onset of laminar-turbulent transition. In the supersonic regime, the linearly, most-amplified waves become three-dimensional, corresponding to oblique, first-mode waves. This change in the character of dominant instabilities leads to an important change in the transition process, which is now dominated by oblique breakdown via nonlinear interactions between pairs of first-mode waves that propagate at equal but opposite angles with respect to the free stream. Because the oblique breakdown process is characterized by a rapid amplification of stationary streamwise streaks, artificial excitation of such streaks may be expected to promote transition in a supersonic boundary layer. Indeed, suppression of those streaks has been shown to delay the onset of transition in prior literature. Consistent with those findings, the present study shows that optimally growing stationary streaks indeed destabilize the first-mode waves, but only when the spanwise wavelength of the instability waves is equal to or smaller than twice the streak spacing. Transition in a benign disturbance environment typically involves first-mode waves with significantly longer spanwise wavelengths, and hence, these waves are stabilized by the optimal growth streaks. Thus, as long as the amplification factors for the destabilized, short wavelength instability waves remain below the threshold level for transition, a significant net stabilization is achieved, yielding a transition delay that is comparable to the length of the laminar region in the uncontrolled case.

Boundary layer transition↗

NASA NTRS2018

Nosetip Bluntness Effects on Transition at Hypersonic Speeds: Experimental and Numerical Analysis

The existing database of transition measurements in hypersonic ground facilities has established that the onset of boundary layer transition over a circular cone at zero angle of attack shifts downstream as the nosetip bluntness is increased with respect to a sharp cone. However, this trend is reversed at sufficiently large values of the nosetip Reynolds number, so that the transition onset location eventually moves upstream with a further increase in nosetip bluntness. This transition reversal phenomenon, which cannot be explained on the basis of linear stability theory, was the focus of a collaborative investigation under the NATO STO group AVT-240 on Hypersonic Boundary-Layer Transition Prediction. The current paper provides an overview of that effort, which included wind tunnel measurements in three different facilities and theoretical analysis related to modal and nonmodal amplification of boundary layer disturbances. Because neither first and second-mode waves nor entropy-layer instabilities are found to be substantially amplified to initiate transition at large bluntness values, transient (i.e., nonmodal) disturbance growth has been investigated as the potential basis for a physics based model for the transition reversal phenomenon. Results of the transient growth analysis indicate that stationary disturbances that are initiated within the nosetip or in the vicinity of the juncture between the nosetip and the frustum can undergo relatively significant nonmodal amplification and that the maximum energy gain increases nonlinearly with the nose radius of the cone. This finding does not provide a definitive link between transient growth and the onset of transition, but it is qualitatively consistent with the experimental observations that frustum transition during the reversal regime was highly sensitive to wall roughness, and furthermore, was dominated by disturbances that originated near the nosetip. Furthermore, the present analysis shows significant nonmodal growth of traveling disturbances that peak within the entropy layer and could also play a role in the transition reversal phenomenon.

Freestream Mach Number↗

NASA NTRS2018

Transition Delay via Vortex Generators in a Hypersonic Boundary Layer at Flight Conditions

The potential of realizable, stationary streaks undergoing non-modal growth to stabilize a hypersonic boundary-layer flow and, subsequently, delay the laminar-turbulent transition onset, is studied via numerical computations. The geometry and flow conditions are selected to match a relevant trajectory location from the ascent phase of the HIFiRE-1 flight experiment, namely, a 7-degree half-angle cone with 2.5 mm nose radius, freestream Mach number of 5.30, freestream unit Reynolds number equal to 13.42 x 10(exp 6)/m, and wall-to-adiabatic temperature ratio of approximately 0.35 over most of the test article. This paper investigates flow modifications induced by wall-mounted vortex generators (VGs), followed by an analysis of the modal instability of the perturbed, streaky boundary-layer flow. Results are presented both for a single array of VGs that was designed on the basis of optimal growth theory and for a VG configuration involving two separate arrays with opposite orientations that ware designed to provide staged control of flow instabilities while simultaneously reducing the amplification of streak instabilities resulting from the control devices. Earlier research had shown that the onset of transition during the HIFiRE-1 flight experiment, which did not include any control devices, correlated with an amplification factor of N = 14.7 for the planar Mack modes. If one assumes that the transition N -factor is not affected by the introduction of the VGs, then the control configurations based on a single array of VGs and two separate arrays would result in a transition delay of 17% and 40%, respectively. These findings suggest a passive flow control s to induce streaks that would delay transition in hypersonic boundary dominated by Mack-mode instabilities.

Incompressible boundary layer↗

NASA NTRS2019

Laminar-Turbulent Transition Upstream of the Entropy-Layer Swallowing Location in Hypersonic Boundary Layers

Numerical and experimental studies have demonstrated that modal growth of planar Mack modes is responsible for laminar-turbulent transition on sharp cones at hypersonic speeds. However, the physical mechanisms that lead to transition onset upstream of the entropy-layer swallowing location over sufficiently blunt geometries are not well understood as yet. Modal amplification is too weak or nonexistent to initiate transition at moderate-to-large bluntness values. Nonmodal analysis shows that, with increasing nose bluntness, both planar and oblique traveling disturbances that peak within the entropy layer experience appreciable energy amplification. However, because of the relatively weak signature of the nonmodal traveling disturbances within the boundary-layer region, the route to transition onset subsequent to the nonmodal growth remains unclear. Thus, nonlinear parabolized stability equations (NPSE) and direct numerical simulations (DNS) have been used to investigate the potential transition mechanisms over a 7-degree blunt cone that was tested in the AFRL Mach-6 high-Reynoldsnumber facility. Computations are performed to separately follow the nonlinear development of two classes of inflow disturbances, namely, a pair of oblique traveling waves with equal but opposite angles with respect to the mean flow direction and a planar traveling wave. Results in both cases show an excellent agreement between the NPSE and DNS predictions, establishing that the NPSE is an accurate and efficient technique for predicting the nonlinear development for these particular nonmodal traveling disturbances. Computations reveal that the oblique mode interactions lead to the generation of stationary streaks inside the boundary layer that, in turn, facilitate the growth of a subharmonic sinuous disturbance. For relatively modest amplitudes of the inflow disturbance, the oblique-mode breakdown can lead to transition at the measured location of transition onset during the experiment. On the other hand, the nonlinear development of a planar traveling wave leads to the formation of inclined structures just above the boundary-layer edge and these structures are strongly reminiscent of the transitional events observed during blunt cone experiments by using schlieren flow visualizations.

Entropy↗