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At least 667 records · Page 37
All sourcesNASA NTRSDOE OSTI
DOE OSTI2026

Pyrolysis_Molecular_Beam_Mass_Spectrometry_Analysis_of_hybrid_cross_of_Populus_tremula_x_P_alba_717-1B4_and_overexpression_of_a_lectin_receptor-like_kinase_(PtLecRLK1)

Stem tissues from the hybrid poplarPopulus tremula × P. albaclone 717-1B4 and from lectin receptor-like kinase overexpression lines PP7 and PP19 were individually colonized with the ectomycorrhizal fungiLaccaria bicolorstrain S238N,Hyaloscypha finlandicastrain PMI746, orUmbelopsis vinaceastrain PMI3018, as well as with a mixed fungal inoculum; non-inoculated plants served as controls. Plants were grown in a greenhouse at Oak Ridge National Laboratory and harvested in January 2025. Stem samples were analyzed using Pyrolysis–Molecular Beam Mass Spectrometry (Py-MBMS). Stems were harvested, debarked, dried, milled, destarched and ethanol extracted prior to analysis. Py-MBMS analysis was conducted using approximately 4 mg of wood from biomass and each sample was analyzed in duplicate. A Frontier PY2020 unit pyrolyzed samples at 500°C for 30 s in 80 µL deactivated stainless steel cups. An Extrel Super-Sonic MBMS Model Max 1000 was used to collect mass spectral data fromm/z30 to 450 at 17 eV and processed using Merlin Automation software (V3). Spectral ion intensities were normalized to the total ion chromatogram signal for each sample for analysis of spectral variance. Lignin content (wt %) was estimated based on relative responses from standards of known Klason lignin content using mean-normalized ion intensities ofm/z120, 124 (G), 137 (G), 138 (G), 150 (G), 152, 154 (S), 164 (G), 167 (S), 168 (S), 178 (G), 180, 181, 182 (S), 194 (S), 208 (S) and 210 (S) where G indicates guaiacyl-derived ions, S indicates syringyl-derived ions, and other ions either derive from other lignin monomers or multiple sources. Ratios of S and G lignin monomer units (S/G) were obtained by dividing the sum of S-based ions by the sum of G-based ions using mean-normalized ion intensities.

CBI↗
DOE OSTI2022

Proteomics reveals pathways linked to septoria canker resistance and susceptibility in Populus trichocarpa

A major threat to forest ecosystems and plantation forestry is the introduction of a non-native pathogen. Among non-domesticated populations with relatively high levels of genetic diversity, a measurable range of susceptibility to resistance can be expected. Identifying genetic determinants of resistant and susceptible individuals can inform the development of new strategies to engineer disease resistance. Here we describe pathogen-induced changes in the proteome of Populus trichocarpa stem tissue in response to Sphaerulia musiva (Septoria canker). This hemibiotrophic fungal pathogen causes stem canker disease in susceptible poplar genotypes. Proteomics analyses were performed on stem tissue harvested across 0-, 12-, 24- and 48-h post-inoculation with Septoria from three genotypes including one resistant (BESC-22) and two susceptible [BESC-801; Nisqually-1 (NQ-1)]. In total, 11,897 Populus proteins at FDR <0.01 were identified across all time points and genotypes. Analysis of protein abundances between genotypes revealed that the resistant poplar genotype (BESC-22) mounts a rapid and sustained defense response involving pattern recognition receptors, calcium signaling proteins, SAR inducers, transcriptional regulators, resistance proteins, and proteins involved with the hypersensitive response. One susceptible genotype (BESC-801) had a downregulated and delayed defense response whereas the second susceptible genotype (NQ-1) lacked a distinct pattern. Overall, the proteome-wide and protein-specific trends suggest that responses to the Septoria canker infection are genotype-specific for the naïve host, Populus trichocarpa .

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Transport Simulations on Scanning Transmission Electron Microscope Images of Nanoporous Shale

Digital rock physics is an often-mentioned approach to better understand and model transport processes occurring in tight nanoporous media including the organic and inorganic matrix of shale. Workflows integrating nanometer-scale image data and pore-scale simulations are relatively undeveloped, however. In this paper, a workflow is demonstrated progressing from sample acquisition and preparation, to image acquisition by Scanning Transmission Electron Microscopy (STEM) tomography, to volumetric reconstruction to pore-space discretization to numerical simulation of pore-scale transport. Key aspects of the workflow include (i) STEM tomography in high angle annular dark field (HAADF) mode to image three-dimensional pore networks in µm-sized samples with nanometer resolution and (ii) lattice Boltzmann method (LBM) simulations to describe gas flow in slip, transitional, and Knudsen diffusion regimes. It is shown that STEM tomography with nanoscale resolution yields excellent representation of the size and connectivity of organic nanopore networks. In turn, pore-scale simulation on such networks contributes to understanding of transport and storage properties of nanoporous shale. Interestingly, flow occurs primarily along pore networks with pore dimensions on the order of tens of nanometers. Smaller pores do not form percolating pathways in the sample volume imaged. Apparent gas permeability in the range of 10−19 to 10−16 m2 is computed.

42 ENGINEERING↗
DOE OSTI2026

Allometric and Mobile Terrestrial LiDAR Modeling of Aboveground Woody Biomass of Populus in Coppice Production

Poplars ( Populus spp.) and their hybrids are increasingly being grown in coppice production to generate bioenergy feedstocks at frequent intervals. Allometric equations are re-quired to predict aboveground biomass (AGB) of coppiced individuals with minimal field measurements. Likewise, remote sensing tools like LiDAR (light detection and ranging) can be used if models are available to predict AGB from point cloud data. Therefore, this study sought to develop equations to predict dry woody AGB from field measurements and LiDAR data from coppiced poplar field trials containing eastern cottonwood ( P. del-toides ) and hybrid poplar taxa. We found that taxa-specific allometric models containing the summed basal area of the three largest stems in the coppice provided the best predictive model, with stem height and stem count failing to provide additional explanatory power. The best predictive LiDAR-based model was independent of taxa but had slightly lower adjusted R 2 and higher RMSE than the allometric model. It contained four parameters including crown volume, leaf area index, variance of height returns, and the top point density (i.e., density metric 9 or the proportion of points in the highest point interval when the point cloud is evenly divided into ten vertical intervals). In total, these models can be used to quickly and efficiently estimate dry woody AGB of Populus coppice systems for bioenergy feedstock production.

AGB↗
DOE OSTI2021

Performing In Situ Closed-Cell Gas Reactions in the Transmission Electron Microscope

Gas reactions studied by in situ electron microscopy can be used to capture the real-time morphological and microchemical transformations of materials at length scales down to the atomic level. In situ closed-cell gas reaction (CCGR) studies performed using (scanning) transmission electron microscopy (STEM) can separate and identify localized dynamic reactions, which are extremely challenging to capture using other characterization techniques. For these experiments, we used a CCGR holder that utilizes microelectromechanical systems (MEMS)-based heating microchips (hereafter referred to as "E-chips"). The experimental protocol described here details the method for performing in situ gas reactions in dry and wet gases in an aberration-corrected STEM. This method finds relevance in many different materials systems, such as catalysis and high-temperature oxidation of structural materials at atmospheric pressure and in the presence of various gases with or without water vapor. Here, several sample preparation methods are described for various material form factors. During the reaction, mass spectra obtained with a residual gas analyzer (RGA) system with and without water vapor further validates gas exposure conditions during reactions. Integrating an RGA with an in situ CCGR-STEM system can, therefore, provide critical insight to correlate gas composition with the dynamic surface evolution of materials during reactions. In situ/operando studies using this approach allow for detailed investigation of the fundamental reaction mechanisms and kinetics that occur at specific environmental conditions (time, temperature, gas, pressure), in real-time, and at high spatial resolution.

29 ENERGY PLANNING, POLICY, AND ECONOMY↗
DOE OSTI2022

The impact of hurricane disturbances on a tropical forest: implementing a palm plant functional type and hurricane disturbance module in ED2-HuDi V1.0

Hurricanes commonly disturb and damage tropical forests. Hurricane frequency and intensity are predicted to change under the changing climate. The short-term impacts of hurricane disturbances to tropical forests have been widely studied, but the long-term impacts are rarely investigated. Modeling is critical to investigate the potential response of forests to future disturbances, particularly if the nature of the disturbances is changing with climate. Unfortunately, existing models of forest dynamics are not presently able to account for hurricane disturbances. Therefore, we implement the Hurricane Disturbance in the Ecosystem Demography model (ED2) (ED2-HuDi). The hurricane disturbance includes hurricane-induced immediate mortality and subsequent recovery modules. The parameterizations are based on observations at the Bisley Experimental Watersheds (BEW) in the Luquillo Experimental Forest in Puerto Rico. We add one new plant functional type (PFT) to the model – Palm, as palms cannot be categorized into one of the current existing PFTs and are known to be an abundant component of tropical forests worldwide. The model is calibrated with observations at BEW using the generalized likelihood uncertainty estimation (GLUE) approach. The optimal simulation obtained from GLUE has a mean relative error of –21 %, –12 %, and –15 % for stem density, basal area, and aboveground biomass, respectively. The optimal simulation also agrees well with the observation in terms of PFT composition (+1 %, –8 %, –2 %, and +9 % differences in the percentages of “Early”, “Mid”, “Late”, and “Palm” PFTs, respectively) and size structure of the forest (+0.8 % differences in the percentage of large stems). Lastly, using the optimal parameter set, we study the impact of forest initial condition on the recovery of the forest from a single hurricane disturbance. The results indicate that, compared to a no-hurricane scenario, a single hurricane disturbance has little impact on forest structure (+1 % change in the percentage of large stems) and composition (<1 % change in the percentage of each of the four PFTs) but leads to 5 % higher aboveground biomass after 80 years of succession. The assumption of a less severe hurricane disturbance leads to a 4 % increase in aboveground biomass.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Quantification of hydraulic trait control on plant hydrodynamics and risk of hydraulic failure within a demographic structured vegetation model in a tropical forest (FATES–HYDRO V1.0)

Abstract. Vegetation plays a key role in the global carbon cycle and thus is an important component within Earth system models (ESMs) that project future climate. Many ESMs are adopting methods to resolve plant size and ecosystem disturbance history, using vegetation demographic models. These models make it feasible to conduct more realistic simulation of processes that control vegetation dynamics. Meanwhile, increasing understanding of the processes governing plant water use, and ecosystem responses to drought in particular, has led to the adoption of dynamic plant water transport (i.e., hydrodynamic) schemes within ESMs. However, the extent to which variations in plant hydraulic traits affect both plant water stress and the risk of mortality in trait-diverse tropical forests is understudied. In this study, we report on a sensitivity analysis of an existing hydrodynamic scheme (HYDRO) model that is updated and incorporated into the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) (FATES–HYDRO V1.0). The size- and canopy-structured representation within FATES is able to simulate how plant size and hydraulic traits affect vegetation dynamics and carbon–water fluxes. To better understand this new model system, and its functionality in tropical forest systems in particular, we conducted a global parameter sensitivity analysis at Barro Colorado Island, Panama. We assembled 942 observations of plant hydraulic traits on 306 tropical plant species for stomata, leaves, stems, and roots and determined the best-fit statistical distribution for each trait, which was used in model parameter sampling to assess the parametric sensitivity. We showed that, for simulated leaf water potential and loss of hydraulic conductivity across different plant organs, the four most important traits were associated with xylem conduit taper (buffers increasing hydraulic resistance with tree height), stomatal sensitivity to leaf water potential, maximum stem hydraulic conductivity, and the partitioning of total hydraulic resistance above vs. belowground. Our analysis of individual ensemble members revealed that trees at a high risk of hydraulic failure and potential tree mortality generally have a lower conduit taper, lower maximum xylem conductivity, lower stomatal sensitivity to leaf water potential, and lower resistance to xylem embolism for stem and transporting roots. We expect that our results will provide guidance on future modeling studies using plant hydrodynamic models to predict the forest responses to droughts and future field campaigns that aim to better parameterize plant hydrodynamic models.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Signatures of prescribed fire in the microbial communities of Cornus florida are largely undetectable five months post-fire

Prescribed burn is a management tool that influences the physical structure and composition of forest plant communities and their associated microorganisms. Plant-associated microorganisms aid in host plant disease tolerance and increase nutrient availability. The effects of prescribed burn on microorganisms associated with native ecologically and economically important tree species, such as Cornus florida L. (flowering dogwood), are not well understood, particularly in aboveground plant tissues (e.g., leaf, stem, and bark tissues). The objective of this study was to use 16S rRNA gene and ITS2 region sequencing to evaluate changes in bacterial and fungal communities of five different flowering dogwood-associated niches (soil, roots, bark, stem, and leaves) five months following a prescribed burn treatment. The alpha- and beta-diversity of root bacterial/archaeal communities differed significantly between prescribed burn and unburned control-treated trees. In these bacterial/archaeal root communities, we also detected a significantly higher relative abundance of sequences identified as Acidothermaceae, a family of thermophilic bacteria. No significant differences were detected between prescribed burn-treated and unburned control trees in bulk soils or bark, stem, or leaf tissues. The findings of our study suggest that prescribed burn does not significantly alter the aboveground plant-associated microbial communities of flowering dogwood trees five months following the prescribed burn application. Further studies are required to better understand the short- and long-term effects of prescribed burns on the microbial communities of forest trees.

16S rRNA↗
NASA NTRS1974

Apollo drill core depth relationships

Preliminary depth relationships are presented for the Apollo 15, 16, and 17 drill core samples. For a given depth in any of these drill stems, the in situ lunar surface depth can be estimated. Ranges of uncertainty are also established, based on percent core recovery and degree of sample disturbance. The most likely explanation for the sample disturbance observed in the top three sections of the Apollo 16 drill stem is sample migration after the stem was capped on the lunar surface; essentially no sample was lost. Similar disturbance occurred in the Apollo 17 drill core, although to a lesser degree. The average original bulk densities (i.e., before any disturbance occurred) of the Apollo 15, 16, and 17 drill cores are 1.76, 1.59, and 1.87 g/cu cm, respectively. The Apollo 15 and 17 values are probably close to the in situ values; but the Apollo 16 average in situ density could be as much as 13% less than the already low density in the drill core.

Carrier, W. D., III↗
NASA NTRS1979

Noncontacting valve-position indicator

Position of sealed valve or other movable part is indicated without penetrating housing. Flux from magnets connected to stem of hydraulic valve penetrates pressure wall and is sensed by Hall-effect transducer outside wall. When valve closes, moving stem and magnets, voltage from transducer decreases; thus, stem position is indicated without physical contact.

Crovella, E. A.↗
NASA NTRS1989

The effects of simulated hypogravity on murine bone marrow cells

Mouse bone marrow cells grown in complete medium at unit gravity were compared with a similar population cultured in conditions that mimic some aspects of microgravity. After the cells adjusted to the conditions that simulated microgravity, they proliferated as fetal or oncogenic populations; their numbers doubled in twelve hour periods. Differentiated subpopulations were depleted from the heterogeneous mixture with time and the undifferentiated hematopoietic stem cells increased in numbers. The cells in the control groups in unit gravity and those in the bioreactors in conditions of microgravity were monitored under a number of parameters. Each were phenotyped as to cell surface antigens using a panel of monoclonal antibodies and flow cytometry. Other parameters compared included: pH, glucose uptake, oxygen consumption and carbon-dioxide production. Nuclear DNA was monitored by flow cytometry. Functional responses were studied by mitogenic stimulation by various lectins. The importance of these findings should have relevance to the space program. Cells should behave predictably in zero gravity; specific populations can be eliminated from diverse populations and other populations isolated. The availability of stem cell populations will enhance both bone marrow and gene transplant programs. Stem cells will permit developmental biologists study the paths of hematopoiesis.

Lawless, Desales↗
NASA NTRS1991

Rotationally actuated prosthetic helping hand

A prosthetic device has been developed for below-the-elbow amputees. The device consists of a cuff, a stem, a housing, two hook-like fingers, an elastic band for holding the fingers together, and a brace. The fingers are pivotally mounted on a housing that is secured to the amputee's upper arm with the brace. The stem, which also contains a cam, is rotationally mounted within the housing and is secured to the cuff, which fits over the amputee's stump. By rotating the cammed stem between the fingers with the lower arm, the amputee can open and close the fingers.

Norton, William E.↗
NASA NTRS1991

Canopy architecture of a walnut orchard

A detailed dataset describing the canopy geometry of a walnut orchard was acquired to support testing and comparison of the predictions of canopy microwave and optical inversion models. Measured canopy properties included the quantity, size, and orientation of stems, leaves, and fruit. Eight trees receiving 100 percent of estimated potential evapotranspiration water use and eight trees receiving 33 percent of potential water use were measured. The vertical distributions of stem, leaf, and fruit properties are presented with respect to irrigation treatment. Zenith and probability distributions for stems and leaf normals are presented. These data show that, after two years of reduced irrigation, the trees receiving only 33 percent of their potential water requirement had reduced fruit yields, lower leaf area index, and altered allocation of biomass within the canopy.

Ustin, Susan L.↗
NASA NTRS1992

Methane transport mechanisms and isotopic fractionation in emergent macrophytes of an Alaskan tundra lake

The stable carbon isotopic composition of methane associated with and emitted by the two dominant emergent macrophytes abundant in the many Alaskan tundra lakes, Carex rostrata and Arctophila fulva, is determined. The carbon isotopic composition of the methane was -58.6 +/- 0.5 (n=2) for Arctophila and -66.6 +/- 2.5 (n=6) for Carex. The methane emitted by these species is depleted in C-13 by 12 per mil for Arctophila and 18 per mil for Carex relative to methane withdrawn from plant stems 1-2 cm below the waterline. The results suggest more rapid transport of (C-12)H4 relative to (C-13)H4 through plants to the atmosphere. Plant stem methane concentrations ranged from 0.2 to 4.0 percent in Arctophila, with an isotopic composition of -46.1 +/- 4.3 percent (n=8). Carex stem methane concentrations ranged from 150 to 1200 ppm, with an isotopic composition of -48.3 +/- 1.4 per mil (n=3).

Chanton, Jeffrey P.↗
NASA NTRS1993

Engineering approach to the prediction of shock patterns in bounded high-speed flows

A two-dimensional symmetric wedge configuration representative of a single high-speed intake in steady flow was investigated. The analysis presented here is intended as an engineering approach for estimating certain features of the internal shock system. The primary interest here is the prediction of the size and location of the almost-normal shock wave that develops when the leading-edge shocks intersect at angles above a certain critical value that is less than the wedge detachment angle. The almost-normal shock wave is frequently referred to as the 'Mach stem', Parametric studies enabled the sensitivity of the Mach stem height to various flowfield parameters to be examined, thus indicating how accurately these parameters must be measured in a given experiment. Results of these predictions were compared with those of a steady-flow experiment performed at nominal freestream Mach numbers from 2.8 to 5. The predicted stem heights were consistently lower than the mean experimental values, attributable both to experimental uncertainties and to certain simplifying assumptions used in the analysis. Modification of these assumptions to better represent the test environment improved the analytical results.

Azevedo, D. J.↗
NASA NTRS1932

Coefficients of discharge of fuel-injection nozzles for compression-ignition engines

This report presents the results of an investigation to determine the coefficients of discharge of nozzles with small, round orifices of the size used with high-speed compression-ignition engines. The injection pressures and chamber back pressures employed were comparable to those existing in compression-ignition engines during injection. The construction of the nozzles was varied to determine the effect of the nozzle design on the coefficient. Tests were also made with nozzles assembled in an automatic injection valve, both with a plain and with a helically grooved stem. It was found that a smooth passage before the orifice is requisite for high flow efficiency. A beveled leading edge before the orifice gave a higher coefficient of discharge than a rounded edge. The results with the nozzles assembled in an automatic injection valve having a plain stem duplicated those with the nozzles assembled at the end of a straight tube of constant diameter. Lower coefficients were obtained with the nozzles assembled in an injection valve having a helically grooved stem. When the coefficients of nozzles of any one geometrical shape were plotted against values of corresponding Reynold's numbers for the orifice diameters and rates of flow tested, it was found that experimental points were distributed along a single curve.

Gelalles, A G↗
NASA NTRS1955

Effect of surface roughness on characteristics of spherical shock waves

An investigation has been conducted on a small-scale test layout in which direct observation of the shock wave movement with time could be made in order to determine the effects of surface roughness on the characteristics of spherical shock waves. Data were obtained with 15-gram pentolite charges at four heights of burst, both for a smooth surface and for a surface completely covered with pyramid-shaped roughness elements. The observations resulted in determinations of shock peak overpressure and Mach stem height as a function of distance for each test. Comparison of the smooth-surface data with those obtained for the extremely rough condition showed a small net effort of roughness on the shock peak overpressures at the surface for all burst heights, the effect being to lower the overpressures. The effect of surface roughness on the Mach stem formation and growth was to delay the formation at the greatest charge height and to lower the height of the Mach stem for all heights.Comparison of the free-air shock peak overpressures with larger scale data showed good similarity of the overpressure-distance relationships. The data did not fit a geometrical similarity parameter for the path of the triple point at different heights of burst suggested by other investigators. A simple similarity parameter (relating the horizontal distance to the theoretical point of Mach formation) was found which showed only a small influence of burst height on the path of the triple point. While the data presented provide knowledge of the effect of many surface-roughness elements on the overall shock characteristics, the data do not provide insight into the details of the air-flow characteristics along the surface, nor the relative contribution of individual roughness elements to the results obtained.

Huber, Paul W↗
NASA NTRS1934

The processes in spring-loaded injection valves of solid injection oil engines

On the premise of a rectangular velocity wave arriving at the valve, the equation of motion of a spring-loaded valve stem is developed and analyzed. It is found that the stem oscillates, the oscillation frequency being consistently above the natural frequency of the nozzle stem alone, and whose amplitudes would increase in the absence of damping. The results are evaluated and verified on an example. The pressure in the valve and the spray volume are analyzed and several pertinent questions are discussed on the basis of the results.

Lutz, O↗