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At least 667 records · Page 37
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Evaluation of genetic diversity, agronomic traits, and anthracnose resistance in the NPGS Sudan Sorghum Core collection

The United States Department of Agriculture (USDA) National Plant Germplasm System (NPGS) sorghum core collection contains 3011 accessions randomly selected from 77 countries. Genomic and phenotypic characterization of this core collection is necessary to encourage and facilitate its utilization in breeding programs and to improve conservation efforts. In this study, we examined the genome sequences of 318 accessions belonging to the NPGS Sudan sorghum core set, and characterized their agronomic traits and anthracnose resistance response. We identified 183,144 single nucleotide polymorphisms (SNPs) located within or in proximity of 25,124 annotated genes using the genotyping-by-sequencing (GBS) approach. The core collection was genetically highly diverse, with an average pairwise genetic distance of 0.76 among accessions. Population structure and cluster analysis revealed five ancestral populations within the Sudan core set, with moderate to high level of genetic differentiation. In total, 171 accessions (54%) were assigned to one of these populations, which covered 96% of the total genomic variation. Genome scan based on Tajima’s D values revealed two populations under balancing selection. Phenotypic analysis showed differences in agronomic traits among the populations, suggesting that these populations belong to different ecogeographical regions. A total of 55 accessions were resistant to anthracnose; these accessions could represent multiple resistance sources. Genome-wide association study based on fixed and random model Circulating Probability (farmCPU) identified genomic regions associated with plant height, flowering time, panicle length and diameter, and anthracnose resistance response. Integrated analysis of the Sudan core set and sorghum association panel indicated that a large portion of the genetic variation in the Sudan core set might be present in breeding programs but remains unexploited within some clusters of accessions. The NPGS Sudan core collection comprises genetically and phenotypically diverse germplasm with multiple anthracnose resistance sources. Population genomic analysis could be used to improve screening efforts and identify the most valuable germplasm for breeding programs. The new GBS data set generated in this study represents a novel genomic resource for plant breeders interested in mining the genetic diversity of the NPGS sorghum collection.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1974

Temperature dependence of emission measure in solar X-ray plasmas. 1: Non-flaring active regions

X-ray and ultraviolet line emission from hot, optically thin material forming coronal active regions on the sun may be described in terms of an emission measure distribution function, Phi (T). A relationship is developed between line flux and Phi (T), a theory which assumes that the electron density is a single-valued function of temperature. The sources of error involved in deriving Phi (T) from a set of line fluxes are examined in some detail. These include errors in atomic data (collisional excitation rates, assessment of other mechanisms for populating excited states of transitions, element abundances, ion concentrations, oscillator strengths) and errors in observed line fluxes arising from poorly - known instrumental responses. Two previous analyses are discussed in which Phi (T) for a non-flaring active region is derived. A least squares method of Batstone uses X-ray data of low statistical significance, a fact which appears to influence the results considerably. Two methods for finding Phi (T) ab initio are developed. The coefficients are evaluated by least squares. These two methods should have application not only to active-region plasmas, but also to hot, flare-produced plasmas.

Phillips, K. J. H.↗
DOE OSTI2025

Fast Sideband Control of a Weakly Coupled Multimode Bosonic Memory

Circuit quantum electrodynamics (cQED) with superconducting cavities coupled to nonlinear circuits like transmons offers a promising platform for hardware-efficient quantum information processing. We address critical challenges in realizing this architecture by weakening the dispersive coupling while also demonstrating fast, high-fidelity multimode control by dynamically amplifying gate speeds through transmon-mediated sideband interactions. This approach enables transmon-cavity SWAP gates, for which we achieve speeds up to 30 times larger than the bare dispersive coupling. Combined with transmon rotations, this allows for efficient, universal state preparation in a single cavity mode, though achieving unitary gates and extending control to multiple modes remains a challenge. In this work, we overcome this by introducing two sideband control strategies: (1) a shelving technique that prevents unwanted transitions by temporarily storing populations in sideband-transparent transmon states and (2) a method that exploits the dispersive shift to synchronize sideband transition rates across chosen photon-number pairs to implement transmon-cavity SWAP gates that are selective on photon number. We leverage these protocols to prepare Fock and binomial code states across any of ten modes of a multimode cavity with millisecond cavity coherence times. We demonstrate the encoding of a qubit from a transmon into arbitrary vacuum and Fock state superpositions, as well as entangled NOON states of cavity mode pairs— a scheme extendable to arbitrary multimode Fock encodings. Furthermore, we implement a new binomial encoding gate that converts arbitrary transmon superpositions into binomial code states in $\qty{4}{\micro\second}$ (less than $1/\chi$), achieving an average post-selected final state fidelity of $\qty{96.3}{\percent}$ across different fiducial input states.

Huang, Jordan [Rutgers U., Piscataway]↗
DOE OSTI2022

Dynamic signatures of electronically nonadiabatic coupling in sodium hydride: a rigorous test for the symmetric quasi-classical model applied to realistic, ab initio electronic states in the adiabatic representation

Sodium hydride (NaH) in the gas phase presents a seemingly simple electronic structure making it a potentially tractable system for the detailed investigation of nonadiabatic molecular dynamics from both computational and experimental standpoints. The single vibrational degree of freedom, as well as the strong nonadiabatic coupling that arises from the excited electronic states taking on considerable ionic character, provides a realistic chemical system to test the accuracy of quasi-classical methods to model population dynamics where the results are directly comparable against quantum mechanical benchmarks. Here, using a simulated pump–probe type experiment, this work presents computational predictions of population transfer through the avoided crossings of NaH via symmetric quasi-classical Meyer–Miller (SQC/MM), Ehrenfest, and exact quantum dynamics on realistic, ab initio potential energy surfaces. The main driving force for population transfer arises from the ground vibrational level of the D 1 Σ + adiabatic state that is embedded in the manifold of near-dissociation C 1 Σ + vibrational states. When coupled through a sharply localized first-order derivative coupling most of the population transfers between t = 15 and t = 30 fs depending on the initially excited vibronic wavepacket. While quantum mechanical effects are expected due to the reduced mass of NaH, predictions of the population dynamics from both the SQC/MM and Ehrenfest models perform remarkably well against the quantum dynamics benchmark. Additionally, an analysis of the vibronic structure in the nonadiabatically coupled regime is presented using a variational eigensolver methodology.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2024

Proton removal from Br 73 , 75 to Se 72 , 74 at intermediate energies

Herein we report new experimental data for excited states of 72,74 Se obtained from proton removal from 73,75 Br secondary beams on a proton target. The experiments were performed with the Ursinus-NSCL Liquid Hydrogen Target and the combined GRETINA+S800 setup at the Coupled Cyclotron Facility of the National Superconducting Cyclotron Laboratory at Michigan State University. Within uncertainties, the inclusive cross sections for proton removal from 73,75 Br on a proton target are identical suggesting that the same single-particle orbitals contribute to the proton-removal reaction. In addition, details of the partial cross section fragmentation are discussed. The data might suggest that l = 1, 2, 3, and 4 angular momentum transfers are important to understand the population of excited states of 72,74 Se in proton removal. Available data for excited states of 74 Ge populated through the 75 As(d, 3 He) 74 Ge proton-removal reaction in normal kinematics suggest indeed that the fp and sd shell as well as the 1g 9/2 orbital contribute. A comparison to data available for odd-A nuclei supports that the bulk of the spectroscopic strengths could be found at lower energies in the even-even Se isotopes than in, for instance, the even-even Ge isotopes. In addition, the population of high-J states seems to indicate that multi-step processes contribute to proton-removal reactions at intermediate energies in these collective nuclei.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2021

Search for Multi-flare Neutrino Emissions in 10 yr of IceCube Data from a Catalog of Sources

A recent time-integrated analysis of a catalog of 110 candidate neutrino sources revealed a cumulative neutrino excess in the data collected by IceCube between 2008 April 6 and 2018 July 10. This excess, inconsistent with the background hypothesis in the Northern Hemisphere at the 3.3σ level, is associated with four sources: NGC 1068, TXS 0506+056, PKS 1424+240, and GB6 J1542+6129. Here, this Letter presents two time-dependent neutrino emission searches on the same data sample and catalog: a point-source search that looks for the most significant time-dependent source of the catalog by combining space, energy, and time information of the events, and a population test based on binomial statistics that looks for a cumulative time-dependent neutrino excess from a subset of sources. Compared to previous time-dependent searches, these analyses enable a feature to possibly find multiple flares from a single direction with an unbinned maximum-likelihood method. M87 is found to be the most significant time-dependent source of this catalog at the level of 1.7σ post-trial, and TXS 0506+056 is the only source for which two flares are reconstructed. The binomial test reports a cumulative time-dependent neutrino excess in the Northern Hemisphere at the level of 3.0σ associated with four sources: M87, TXS 0506+056, GB6 J1542+6129, and NGC 1068.

79 ASTRONOMY AND ASTROPHYSICS↗
NASA NTRS1988

Evaluation of materials for tunable vibronic lasers

Three techniques (peak single-pass gain, fluoresence band narrowing, and lifetime shortening) for determining the effects of stimulated emission on the spectra of solid-state vibronic laser materials have been compared. The methods were employed to determine the pump energy density and population inversion at threshold, the stimulated emission cross section, and the gain coefficient for two potential vibronic laser materials. An effective shortening of the fluorescence lifetime is predicted at high excitation levels, with a distinct threshold where stimulated emission processes become important.

Kliewer, Michael L.↗
NASA NTRS1992

Possible observational consequences of primordial binaries in globular clusters

The paper investigates the observational consequences of the evolution of a primordial binary population in a globular cluster. For those binary systems which begin mass transfer at orbital periods of less than about 1 d, the system is expected to evolve to a contact binary stage and to eventually merge to form a single star. At longer orbital periods, the binary system will enter into a common envelope stage. For periods less than about 10 d, the system is likely to merge, and the outcome of the evolution is a single red giant star. For systems characterized by orbital periods greater than about 15 d, a detached red dwarf-white dwarf binary system is expected to change. As a consequence of the mergers, a range in masses for the red giant stars is possible, leading to a color spread on the RGB of the color magnitude diagram. The luminosity function of stars at high luminosities is expected to steepen as a result of tidal interaction in the binary. It is suggested that the formation of cataclysmic variables via primordial binaries is expected only in loosely bound clusters of low-velocity dispersion.

Taam, Ronald E.↗
NASA NTRS1999

X-33 Hypersonic Aerodynamic Characteristics

Lockheed Martin Skunk Works, under a cooperative agreement with NASA, will build and fly the X-33, a half-scale prototype of a rocket-based, single-stage-to-orbit (SSTO), reusable launch vehicle (RLV). A 0.007-scale model of the X-33 604B0002G configuration was tested in four hypersonic facilities at the NASA Langley Research Center to examine vehicle stability and control characteristics and to populate an aerodynamic flight database in the hypersonic regime, The vehicle was found to be longitudinally controllable with less than half of the total body flap deflection capability across the angle of attack range at both Mach 6 and Mach 10. At these Mach numbers, the vehicle also was shown to be longitudinally stable or neutrally stable for typical (greater than 20 degrees) hypersonic flight attitudes. This configuration was directionally unstable and the use of reaction control jets (RCS) will be necessary to control the vehicle at high angles of attack in the hypersonic flight regime. Mach number and real gas effects on longitudinal aerodynamics were shown to be small relative to X-33 control authority.

Murphy, Kelly J.↗
NASA NTRS1999

X-33 Hypersonic Aerodynamic Characteristics

Lockheed Martin Skunk Works, under a cooperative agreement with NASA, will build and fly the X-33, a half-scale prototype of a rocket-based, single-stage-to-orbit (SSTO), reusable launch vehicle (RLV). A 0.007-scale model of the X-33 604B0002G configuration was tested in four hypersonic facilities at the NASA Langley Research Center to examine vehicle stability and control characteristics and to populate an aerodynamic flight database in the hypersonic regime. The vehicle was found to be longitudinally controllable with less than half of the total body flap deflection capability across the angle of attack range at both Mach 6 and Mach 10. At these Mach numbers, the vehicle also was shown to be longitudinally stable or neutrally stable for typical (greater than 20 degrees) hypersonic flight attitudes. This configuration was directionally unstable and the use of reaction control jets (RCS) will be necessary to control the vehicle at high angles of attack in the hypersonic flight regime. Mach number and real gas effects on longitudinal aerodynamics were shown to be small relative to X-33 control authority.

Murphy, Kelly J.↗
NASA NTRS1999

X-33 Hypersonic Aerodynamic Characteristics

Lockheed Martin Skunk Works, under a cooperative agreement with NASA, will design, build, and fly the X-33, a half-scale prototype of a rocket-based, single-stage-to-orbit (SSTO), reusable launch vehicle (RLV). A 0.007-scale model of the X-33 604BOO02G configuration was tested in four hypersonic facilities at the NASA Langley Research Center to examine vehicle stability and control characteristics and to populate the aerodynamic flight database for the hypersonic regime. The vehicle was found to be longitudinally controllable with less than half of the total body flap deflection capability across the angle of attack range at both Mach 6 and Mach 10. Al these Mach numbers, the vehicle also was shown to be longitudinally stable or neutrally stable for typical (greater than 20 degrees) hypersonic flight attitudes. This configuration was directionally unstable and the use of reaction control jets (RCS) will be necessary to control the vehicle at high angles of attack in the hypersonic flight regime. Mach number and real gas effects on longitudinal aerodynamics were shown to be small relative to X-33 control authority.

Murphy, Kelly J.↗
NASA NTRS2004

Impact Crater Abundance of the Martian South Polar Layered Deposits from THEMIS Visible Imaging

The polar layered deposits (PLD) of Mars have attracted considerable attention since their identification in Mariner 9 images, largely due to the possibility that these finely layered, volatile-rich deposits hold a record of recent eras in Martian climate history. The PLD have been a target of imaging and other sensors in the last several decades, but only recently has it been possible to obtain a moderately high resolution image map, using the visible sensor on 2001 Mars Odyssey's Thermal Emission Imaging System (THEMIS). THEMIS has acquired a 36 meter/pixel contiguous single-band visible image data set of the south polar layered deposits (SPLD), during the southern spring in 2003. The data will undoubtedly be applied to many problems in Mars polar studies. We use these images to further characterize the population of impact craters on the SPLD, and the implications of the observed population for the age and evolution of the SPLD.

Plaut, J. J.↗
NASA NTRS1999

X-33 Hypersonic Aerodynamic Characteristics

Lockheed Martin Skunk Works, under a cooperative agreement with NASA, will build and fly the X-33, a half-scale prototype of a rocket-based, single-stage-to-orbit (SSTO), reusable launch vehicle (RLV). A 0.007-scale model of the X-33 604B0002G configuration was tested in four hypersonic facilities at the NASA Langley Research Center to examine vehicle stability and control characteristics and to populate an aerodynamic flight database i n the hypersonic regime. The vehicle was found to be longitudinally controllable with less than half of the total body flap deflection capability across the angle of attack range at both Mach 6 and Mach 10. At these Mach numbers, the vehicle also was shown to be longitudinally stable or neutrally stable for typical (greater than 20 degrees) hypersonic flight attitudes. This configuration was directionally unstable and the use of reaction control jets (RCS) will be necessary to control the vehicle at high angles of attack in the hypersonic flight regime. Mach number and real gas effects on longitudinal aerodynamics were shown to be small relative to X-33 control authority.

Murphy, Kelly J.↗
NASA NTRS2019

The Omics of Stem Cell Mediated Regeneration: A Pilot Single Cell RNA-Seq Study of Mechanotransduction

Mechanical forces are potent modulators of stem cell based tissue regenerative mechanisms, inducing cell fate decisions and tissue specific commitment. A unique platform for investigating mechanotransduction is spaceflight, where microgravity and altered fluid mechanics provide a loading-null experimental condition. Seminal investigations of regenerative capacity in a wholly regenerative species, the newt model, and in a variety of totipotent and adult stem cell populations have demonstrated the detrimental effects of unloading on maintenance of stem cell based regeneration. Of particular interest is the observation that unloading interferes with the transition of stem cell pools from proliferative state to differentiation commitment. In this work we sought to test the hypothesis that gravity mechanotransduction regulates stem cell tissue regenerative processes by modulating stem cell proliferation and differentiation fates at specific cell cycle stages. To do this, clonally-derived ESCs were plated on a collagen matrix and expanded for 36 hours before re-plating on a non-adherent culture dish in the absence of leukemia inhibitory factor (LIF) to form spheroid aggregate EBs. After formation, the EBs were transferred to a collagen matrix coated culture dishes and given 4 days to allow implantation and outgrowth. In parallel, totipotent ESCs were plated 24 hours before mechanical stimulation on collagen matrix culture dishes in the presence of LIF to maintain totipotency and serve as un-differentiation committed controls. The EBs and ESCs were then subjected to either a 60 minute pulse of gravity (static loading) or 60 minutes of cyclic stretch (dynamic loading) mechanotransduction. Six hours post-stimulation, we used a 10X Genomics Single Cell controller to generate bar-coded single cell Illumina libraries and sequenced expressomes for 5,000 static loaded cells, representative of a change in gravity mechanotransduction, 5,000 dynamic loaded cells, representative of tissue loading associate with physiologic function, and 5,000 unstimulated 1g control cells. The comparison of these 3 libraries by cluster assignment based on like gene expression patterns show substantial alteration in cluster geometry due to mechanical loading. Specifically the mechanically loaded EB outgrowth cells to retain potency markers (PAX6, SOX2, CD34) and suppress early commitment markers (Dhh, VCAN, Igf1). Whereas the EBs cultured under the non-stimulated conditions display clear departure from the ESC expressome with lineage commitment markers upregulated and several tissue specific markers being expressed (BMP "early musculoskeletal development, Mesp1" early cardiovascular cell lineage). These markers are not seen in the mechano-stimulated cultures or the totipotent ESC cultures. Comparison of like clusters between our experimental conditions revealed an array of regenerative and stem cell genes are significantly mechano-regulated. Of particular importance CDKN1a/p21, a gene shown by previous investigation of our research team to be significantly upregulated in unloading, was suppressed in the static and dynamic loaded EBS. In addition to CDKN1a/p21 many genes related to cell cycle and transitory differentiation markers had elevated expression in the mechano-stimulated EBs, but surprisingly these trends were not observed in the ESC cultures. This study is the first of its kind investigating for mechano-signaling and mechano-regulated pathways, and has alre

Single cell RNA-sequecing↗
DOE OSTI2025

Hybridization breaks species barriers in long-term coevolution of a cyanobacterial population

Bacterial species often undergo rampant recombination yet maintain cohesive genomic identity. Ecological differences can generate recombination barriers between species and sustain genomic clusters in the short term. But can these forces prevent genomic mixing during long-term coevolution? Cyanobacteria in Yellowstone hot springs comprise several diverse species that have coevolved for hundreds of thousands of years, providing a rare natural experiment. By analyzing more than 300 single-cell genomes, we show that despite each species forming a distinct genomic cluster, much of the diversity within species is the result of hybridization driven by selection, which has mixed their ancestral genotypes. This widespread mixing is contrary to the prevailing view that ecological barriers can maintain cohesive bacterial species and highlights the importance of hybridization as a source of genomic diversity.

Evolutionary Biology↗
DOE OSTI2022

Detecting impacts of surface development near weather stations since 1895 in the San Joaquin Valley of California

Abstract Temperature readings observed at surface weather stations have been used for detecting changes in climate due to their long period of observations. The most common temperature metrics recorded are the daily maximum (TMax) and minimum (TMin) extremes. Unfortunately, influences besides background climate variations impact these measurements such as changes in (1) instruments, (2) location, (3) time of observation, and (4) the surrounding artifacts of human civilization (buildings, farms, streets, etc.) Quantifying (4) is difficult because the surrounding infrastructure, unique to each site, often changes slowly and variably and is thus resistant to general algorithms for adjustment. We explore a direct method of detecting this impact by comparing a single station that experienced significant development from 1895 to 2019, and especially since 1970, relative to several other stations with lesser degrees of such development (after adjustments for the (1) to (3) are applied). The target station is Fresno, California (metro population ~ 15,000 in 1900 and ~ 1 million in 2019) situated on the eastern side of the broad, flat San Joaquin Valley in which several other stations reside. A unique component of this study is the use of pentad (5-day averages) as the test metric. Results indicate that Fresno experienced + 0.4 °C decade −1 more nighttime warming (TMin) since 1970 than its neighbors—a time when population grew almost 300%. There was little difference seen in TMax trends between Fresno and non-Fresno stations since 1895 with TMax trends being near zero. A case is made for the use of TMax as the preferred climate metric relative to TMin for a variety of physical reasons. Additionally, temperatures measured at systematic times of the day (i.e., hourly) show promise as climate indicators as compared with TMax and especially TMin (and thus TAvg) due to several complicating factors involved with daily high and low measurements.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Digital quantum simulation of cavity quantum electrodynamics: insights from superconducting and trapped ion quantum testbeds

We explore the potential for hybrid development of quantum hardware where currently available quantum computers simulate open cavity quantum electrodynamical (CQED) systems for applications in optical quantum communication, simulation and computing. Our simulations make use of a recent quantum algorithm that maps the dynamics of a singly excited open Tavis–Cummings model containing N atoms coupled to a lossy cavity. We report the results of executing this algorithm on two noisy intermediate-scale quantum computers: a superconducting processor and a trapped ion processor, to simulate the population dynamics of an open CQED system featuring N = 3 atoms. By applying technology-specific transpilation and error mitigation techniques, we minimize the impact of gate errors, noise, and decoherence in each hardware platform, obtaining results which agree closely with the exact solution of the system. These results can be used as a recipe for efficient and platform-specific quantum simulation of cavity–emitter systems on contemporary and future quantum computers.

cavity QED↗
DOE OSTI2020

Level Structure of {sup 31}S Via {sup 32}S({ital p,d}) {sup 31}S

Background: Properties of proton-unbound S-31 states determine the P-30(p, gamma) S-31 reaction rate, which has a significant impact on explosive hydrogen burning in classical novae and type-I x-ray bursts. Despite several previous studies, uncertainties still remain with respect to the nuclear structure of S-31 near the proton threshold. Purpose: The level structure of S-31 has been presently investigated via a charged-particle spectroscopy experiment using the S-32(p, d) S-31 reaction. Method: Deuterons corresponding to S-31 excited states with 3.285 <= E-x <= 10.8 MeV were momentum analyzed via an Enge split-pole spectrograph at six laboratory angles between 10 degrees and 62 degrees. Differential cross sections of the S-32(p, d)S-31 reaction were measured at E-p = 34.5 MeV. Distorted-wave Born approximation calculations were performed to constrain the spin-parity assignments of several of the observed levels. Results: We have detected 72 excited states of S-31, out of which 17 are within the astrophysical region of interest corresponding to the temperature range of 0.1-1.5 GK. We have resolved the discrepancy in the spin and parity of an excited state with E-x = 6542 keV, showing that is it not J(pi) = 3/2(-), and therefore the contribution of this state to the P-30(p, gamma) reaction rate is likely much less significant than previously thought owing to the larger angular-momentum transfer required to populate this excited state. Moreover, our measurement results help consolidate the spin-parity assignments for the 6377 and 6636 keV states in S-31. Conclusions: This work presents the most comprehensive spin-parity assignments to date from a single-neutron transfer reaction on S-32 to S-31 excited states in the region between 6 to 7 MeV excitation energy. This region is significant for the determination of the P-30(p, gamma)S-30 reaction rate over the temperatures characteristic of explosive hydrogen burning in novae.

Setoodehnia, K.↗