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At least 667 records · Page 37

Stockmayer fluid simulations for viscosity and glass transition temperature of ionic liquids

We develop a Stockmayer fluid model for molecular dynamics simulations of ionic liquids that captures molecular polarization, ionic conductivity, viscosity, and glass transition temperature, using ethylammonium nitrate (EAN) as an example. The ions in EAN are treated as spheres interacting via the Lennard-Jones potential with an embedded point charge and a permanent dipole moment. We show that our simulation results for EAN are consistent with experimental data and then explore the effects of the molecular parameters on the viscosity of ionic liquids. Our results indicate that viscosity monotonically increases with ionic charge and dipole moment but non-monotonically changes with ionic diameter (or molar volume). This non-monotonic trend arises from the competition among the electrostatic interactions, molecular packing, and size asymmetry between the cation and anion. In conclusion, our model also shows that long-lived ion pairs result in higher viscosities.

Coarse-grained simulations↗

Geometrical frustration versus Kitaev interactions in BaCo 2 (AsO 4 ) 2

Recently, Co-based honeycomb magnets have been proposed as promising candidate materials to host the Kitaev spin liquid (KSL) state. One of the front-runners is BaCo 2 (AsO 4 ) 2 (BCAO), where it was suggested that the exchange processes between Co 2+ ions via the surrounding edge-sharing oxygen octahedra could give rise to bond-dependent Kitaev interactions. In this work, we present and analyze a comprehensive inelastic neutron scattering (INS) study of BCAO with fields in the honeycomb plane. Combining the constraints from the magnon excitations in the high-field polarized state and the inelastic spin structure factor measured in zero magnetic field, we examine two leading theoretical models: the Kitaev-type JK Γ Γ ′ model and the XXZ - J 1 - J 3 model. We show that the existing experimental data can be consistently accounted for by the XXZ - J 1 - J 3 model but not by the JK Γ Γ ′ model, and we discuss the implications of these results for the realization of a spin liquid phase in BCAO and more generally for the realization of the Kitaev model in cobaltates.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Cholesterol-dependent enzyme activity of human TSPO1

The amino acid sequence of the tryptophan-rich sensory proteins (TSPO) is substantially conserved throughout all kingdoms of life. Human mitochondrial TSPO1 (HsTSPO1) binds to porphyrins and steroids, although its interactions with these molecules remains unknown.HsTSPO1 is associated with numerous physiological and pathological disorders, but the underlying molecular mechanisms are unknown. Here, we disclose the finding of human mitochondrial TSPO as a cholesterol-dependent protoporphyrin IX oxygenase. The results of our biochemical characterization are consistent with structural data and evolutionary analysis. The dependence ofHsTSPO1 activity on cholesterol may be the result of the coevolution of this membrane protein with the membrane system. Our study provides a molecular foundation for comprehending the various roles played by mitochondrial TSPO in normal physiological and pathological situations.

Science & Technology - Other Topics↗

Comment on the paper “Physical characterization of Bis(2,2-dinitropropyl) acetal and Bis(2,2-dinitropropyl) formal” by Alexander Edgar, Justine Yang, Manuel Chavez, Michelle Yang & Dali Yang

Errors are noted in the construction of the binary phase diagram in the paper “Physical characterization of Bis(2,2-dinitropropyl) acetal and Bis(2,2-dinitropropyl) formal” by Alexander Edgar, Justine Yang, Manuel Chavez, Michelle Yang & Dali Yang. The authors of that paper misinterpret differential scanning calorimetry (DSC) thermal features. All of the DSC data show features consistent with samples that are supercooled during testing. Such samples do not show solidus points and may not show liquidus points, rendering the constructed phase diagram invalid.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Femtosecond pulse parameter estimation from photoelectron momenta using machine learning

Abstract Deep learning models have provided huge interpretation power for image-like data. Specifically, convolutional neural networks (CNNs) have demonstrated incredible acuity for tasks such as feature extraction or parameter estimation. Here we test CNNs on strong-field ionization photoelectron spectra, training on theoretical data sets to ‘invert’ experimental data. Pulse characterization is used as a ‘testing ground’, specifically we retrieve the laser intensity, where ‘traditional’ measurements typically lead to 20% uncertainty. We report on crucial data augmentation techniques required to successfully train on theoretical data and return consistent results from experiments, including accounting for detector saturation. The same procedure can be repeated to apply CNNs in a range of scenarios for strong-field ionization. Using a predictive uncertainty estimation, reliable laser intensity uncertainties of a few percent can be extracted, which are consistently lower than those given by traditional techniques. Using interpretability methods can reveal parts of the distribution that are most sensitive to laser intensity, which can be directly associated with holographic interferences. The CNNs employed provide an accurate and convenient ways to extract parameters, and represent a novel interpretational tool for strong-field ionization spectra.

Szołdra, Tomasz (ORCID:0000000228970506)↗

MINE: a new way to design genetics experiments for discovery

Abstract The Maximally Informative Next Experiment or MINE is a new experimental design approach for experiments, such as those in omics, in which the number of effects or parameters p greatly exceeds the number of samples n (p > n). Classical experimental design presumes n > p for inference about parameters and its application to p > n can lead to over-fitting. To overcome p > n, MINE is an ensemble method, which makes predictions about future experiments from an existing ensemble of models consistent with available data in order to select the most informative next experiment. Its advantages are in exploration of the data for new relationships with n < p and being able to integrate smaller and more tractable experiments to replace adaptively one large classic experiment as discoveries are made. Thus, using MINE is model-guided and adaptive over time in a large omics study. Here, MINE is illustrated in two distinct multiyear experiments, one involving genetic networks in Neurospora crassa and a second one involving a genome-wide association study in Sorghum bicolor as a comparison to classic experimental design in an agricultural setting.

Biochemistry & Molecular Biology↗

Base excision repair of the N -(2-deoxy- d - erythro -pentofuranosyl)-urea lesion by the hNEIL1 glycosylase

Abstract The N-(2-deoxy-d-erythro-pentofuranosyl)-urea DNA lesion forms following hydrolytic fragmentation of cis-5R,6S- and trans-5R,6R-dihydroxy-5,6-dihydrothymidine (thymine glycol, Tg) or from oxidation of 7,8-dihydro-8-oxo-deoxyguanosine (8-oxodG) and subsequent hydrolysis. It interconverts between α and β deoxyribose anomers. Synthetic oligodeoxynucleotides containing this adduct are efficiently incised by unedited (K242) and edited (R242) forms of the hNEIL1 glycosylase. The structure of a complex between the active site unedited mutant CΔ100 P2G hNEIL1 (K242) glycosylase and double-stranded (ds) DNA containing a urea lesion reveals a pre-cleavage intermediate, in which the Gly2 N-terminal amine forms a conjugate with the deoxyribose C1′ of the lesion, with the urea moiety remaining intact. This structure supports a proposed catalytic mechanism in which Glu3-mediated protonation of O4′ facilitates attack at deoxyribose C1′. The deoxyribose is in the ring-opened configuration with the O4′ oxygen protonated. The electron density of Lys242 suggests the ‘residue 242-in conformation’ associated with catalysis. This complex likely arises because the proton transfer steps involving Glu6 and Lys242 are hindered due to Glu6-mediated H-bonding with the Gly2 and the urea lesion. Consistent with crystallographic data, biochemical analyses show that the CΔ100 P2G hNEIL1 (K242) glycosylase exhibits a residual activity against urea-containing dsDNA.

59 BASIC BIOLOGICAL SCIENCES↗

First Evidence of Solar Neutrino Interactions on 13 C

The SNO+ Collaboration reports the first evidence of 8 B solar neutrinos interacting on 13 C nuclei. The charged current interaction proceeds through 13 C +𝜈 𝑒 → 13 N+𝑒 − which is followed, with a 10 minute half life, by 13 N → 13 C +𝑒 + +𝜈 𝑒 . The detection strategy is based on the delayed coincidence between the electron and the positron. Evidence for the charged current signal is presented with a significance of 4.2⁢𝜎. Using the natural abundance of 13 C present in the scintillator, 5.7 metric tons of 13 C over 231 days of data were used in this analysis. The 5.6$^{+3.0}_{−2.3}$ observed events in the data set are consistent with the expectation of 4.7$^{+0.6}_{−1.3}$ events. This result is the second real-time measurement of CC interactions of 8 B neutrinos with nuclei and constitutes the lowest energy observation of neutrino interactions on 13 C generally. This enables the first direct measurement of the CC 𝜈 𝑒 reaction to the ground state of 13 N , yielding an average cross section of (16.1$^{+8.5}_{−6.7}$⁢(stat.)$^{+1.6}_{−2.7}$⁢(syst.))×10 −43 cm 2 over the relevant 8 B solar neutrino energies.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Extraction of the non-spin- and spin-transfer isovector responses via the 12 C ⁡( 10 Be, 10 B + 𝛾)⁢ 12 B reaction

The isovector response in 12 B was investigated via the 12 C ⁡( 10 Be, 10 B + 𝛾)⁢ 12 B* reaction at 100⁢𝐴MeV. By utilizing the 𝛾-decay properties of the 1.74 MeV 0 + and 0.718 MeV 1 + states in 10 B, the separate extraction of the non-spin-transfer (Δ⁢𝑆 = 0) and spin-transfer (Δ⁢𝑆 = 1) isovector responses up to an excitation energy of 50 MeV in 12 B in a single measurement is demonstrated. The experimental setup employed the S800 spectrometer to detect and analyze the 10 B ejectiles and the Gamma-Ray Energy Tracking In-beam Nuclear Array (GRETINA) for obtaining the Doppler-reconstructed spectrum for 𝛾 rays emitted in flight by 10 B. A 12 C foil was placed at the pivot point of the spectrograph. Here, the 12 B reaction product was not detected. Contributions from transitions associated with the transfer of different units of angular momentum in the non-spin- and spin-transfer responses were analyzed using a multipole decomposition analysis. The extracted non-spin-dipole (Δ⁢𝑆 = 0, Δ⁢𝐿 = 1) and spin-dipole (Δ⁢𝑆 = 1, Δ⁢𝐿 = 1) responses were found to be consistent with available data from other charge-exchange probes, validating the non-spin- and spin-transfer filters used. While statistical uncertainties and experimental resolutions were relatively large due to the modest intensity of the 10 Be secondary beam, the results show that, with the much higher intensities that will be available at new rare-isotope beam facilities, the ( 10 Be, 10 B + 𝛾) reaction and its Δ⁢𝑇 𝑧 = −1 partner, the ( 10 C, 10 B + 𝛾) reaction, are powerful tools for elucidating the isovector non-spin- and spin-transfer responses in nuclei.

Charge-exchange reactions↗

Improved measurements of the TeV-PeV extragalactic neutrino spectrum from joint analyses of IceCube tracks and cascades

The IceCube South Pole Neutrino Observatory has discovered the presence of a diffuse astrophysical neutrino flux at energies of TeV and beyond using neutrino induced muon tracks and cascade events from neutrino interactions. Here, we present two analyses sensitive to neutrino events in the energy range 1 TeV to 10 PeV, using more than 10 years of IceCube data. Both analyses consistently reject a neutrino spectrum following a single power-law with a significance of > 4⁢𝜎 in favor of a broken power law. We describe the methods implemented in the two analyses, the spectral constraints obtained, and the validation of the robustness of the results. Additionally, we report the detection of a muon neutrino in the medium energy starting events sample, or MESE, with an energy of 11.4$^{+2.46}_{−2.53}$ PeV, the highest energy neutrino observed by IceCube to date. The results presented here show insights into the spectral shape of astrophysical neutrinos, which has important implications for inferring their production processes in a multimessenger picture.

astroparticles↗

Improved Vertical Carrier Transport for Green III-Nitride LEDs Using ( In , Ga ) N Alloy Quantum Barriers

We report on experimental and simulation-based results using ( In , Ga ) N alloy quantum barriers in c -plane green light-emitting diode (LED) structures as a means to improve vertical carrier transport and reduce forward voltage ( V F ) . Three-dimensional device simulations that include random alloy fluctuations are used to understand carrier behavior in a disordered potential. The simulated current density–voltage ( J - V ) characteristics and modified electron-hole overlap | F mod | 2 indicate that increasing the indium fraction in the ( In , Ga ) N quantum barriers leads to a reduced polarization discontinuity at the interface between the quantum barrier and quantum well, thereby reducing V F and improving | F mod | 2 . Maps of electron and hole current through the device show a relatively homogenous distribution in the X Y plane for structures using Ga N quantum barriers; in contrast, preferential pathways for vertical transport are identified in structures with ( In , Ga ) N barriers as regions of high and low current. A positive correlation between hole (electron) current in the p -side ( n -side) barrier and indium fraction reveals that preferential pathways exist in regions of high indium content. Furthermore, a negative correlation between the strain ε z z and indium fraction shows that high indium content regions have reduced strain-induced piezoelectric polarization in the Z direction due to the mechanical constraint of the surrounding lower indium content regions. Experimentally, multiple quantum well green LEDs with ( In , Ga ) N quantum barriers exhibit lower V F and blue-shifted wavelengths relative to LEDs with Ga N quantum barriers, consistent with simulation data. These results can be used to inform heterostructure design of low V F , long-wavelength LEDs and provide important insight into the nature of carrier transport in III-nitride alloy materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Implications of second harmonic generation for hidden order in Sr 2 CuO 2 Cl 2

Sr 2 CuO 2 Cl 2 (SCOC) is a model undoped cuprate with I4/mmm crystallographic symmetry, and a simple magnetic space group CAmca with associated magnetic point group mmm1'. However, recent second harmonic spectroscopy in the antiferromagnetic phase has challenged this picture, suggesting instead a magnetic point group 4/mm'm' that coexists with the antiferromagnetism and breaks the two orthogonal mirror planes containing the tetragonal c axis. Here, we analyze the symmetry of SCOC in light of the second harmonic results, and discuss possible ground states that are consistent with the data.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Slow electron-phonon relaxation controls the dynamics of the superconducting resistive transition

Here, we investigate the temporal and spatial scales of resistance fluctuations (𝑅 fluctuations) at the superconducting resistive transition accessed through voltage fluctuation measurements in thin epitaxial TiN films. This material is characterized by slow electron-phonon relaxation, which puts it far beyond the applicability range of the textbook scenario of superconducting fluctuations. The measured Lorentzian spectrum of the 𝑅 fluctuations identifies their correlation time, which is nearly constant across the transition region and has no relation to the conventional Ginzburg-Landau timescale. Instead, the correlation time coincides with the energy relaxation time determined by a combination of the electron-phonon relaxation and the relaxation via diffusion into reservoirs. Our data are quantitatively consistent with the model of spontaneous temperature fluctuations and highlight the lack of understanding of the resistive transition in materials with slow electron-phonon relaxation.

critical phenomena↗

Toward observation of three-nucleon short-range correlations in high- Q 2 A ( e , e ' ) X reactions

Here, we present a detailed study of the kinematical and dynamical conditions necessary for probing highly elusive three-nucleon short-range correlations (3N-SRCs) in nuclei through inclusive electron scattering. The kinematic requirements that should be satisfied in order to isolate 3N-SRCs in inclusive processes are derived. We demonstrate that a sequence of two short-range NN interactions is the main mechanism for 3N-SRCs in such processes. With this mechanism we predict a quadratic dependence of the cross section ratios of nuclei to 3 He in the 3N-SRC region to the same ratio measured in the 2N-SRC domain. An extended analysis of the available data which satisfies the required 3N-SRC kinematical conditions is presented. This analysis reveals tantalizing signatures of the scaling associated with the onset of 3N-SRC dominance. The same data are also consistent with the prediction of the quadratic relation between the ratios measured in the 3N- and 2N-SRC regions for nuclei ranging 4≤A≤197. This agreement made it possible to extract a 3 ⁡(A), the probability of 3N-SRCs relative to the A=3 nucleus. We find a 3 ⁡(A) to be significantly larger in magnitude than the analogous parameter, a 2 ⁡(A), for 2N-SRCs.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Effects of nuclear structure and quantum interference on diffractive vector meson production in ultra-peripheral nuclear collisions

Here we study diffractive vector meson production in ultra-peripheral collisions (UPCs) of heavy nuclei, utilizing a theoretical framework based on the Color Glass Condensate (CGC) formalism. We focus on Au + Au, U + U, Ru + Ru, Zr + Zr, and Pb + Pb collisions, examining the transverse momentum dependence of vector meson production cross-sections and co s(2ΔΦ)asymmetries in the decay product distributions to explore the role of nuclear geometry. The angular modulation is due to the linear polarization of the incoming photons and quantum interference effects. We extract nuclear radii and find them to be consistent with experimental data from the STAR collaboration. The amplitudes of the cos(2ΔΦ)modulation in the cross-section and the extracted radii depend on the nuclear geometry. This dependence is dominated by the geometry-dependent variation of the minimum impact parameter required for ultra-peripheral collisions.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Dark Energy Survey Year 1 Results: Cosmological constraints from cluster abundances and weak lensing

In this work we perform a joint analysis of the counts and weak lensing signal of redMaPPer clusters selected from the Dark Energy Survey (DES) Year 1 dataset. Our analysis uses the same shear and source photometric redshifts estimates as were used in the DES combined probes analysis. Our analysis results in surprisingly low values for $S_8 =\sigma_8(\Omega_{\rm m}/0.3)^{0.5}= 0.65\pm 0.04$, driven by a low matter density parameter, $\Omega_{\rm m}=0.179^{+0.031}_{-0.038}$, with $\sigma_8-\Omega_{\rm m}$ posteriors in $2.4\sigma$ tension with the DES Y1 3x2pt results, and in $5.6\sigma$ with the Planck CMB analysis. These results include the impact of post-unblinding changes to the analysis, which did not improve the level of consistency with other data sets compared to the results obtained at the unblinding. The fact that multiple cosmological probes (supernovae, baryon acoustic oscillations, cosmic shear, galaxy clustering and CMB anisotropies), and other galaxy cluster analyses all favor significantly higher matter densities suggests the presence of systematic errors in the data or an incomplete modeling of the relevant physics. Cross checks with X-ray and microwave data, as well as independent constraints on the observable--mass relation from SZ selected clusters, suggest that the discrepancy resides in our modeling of the weak lensing signal rather than the cluster abundance. Repeating our analysis using a higher richness threshold ($\lambda \ge 30$) significantly reduces the tension with other probes, and points to one or more richness-dependent effects not captured by our model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Inference of bipolar neutrino flavor oscillations near a core-collapse supernova based on multiple measurements at Earth

Neutrinos in compact-object environments, such as core-collapse supernovae, can experience various kinds of collective effects in flavor space, engendered by neutrino-neutrino interactions. These include “bipolar” collective oscillations, which are exhibited by neutrino ensembles where different flavors dominate at different energies. Considering the importance of neutrinos in the dynamics and nucleosynthesis in these environments, it is desirable to ascertain whether an Earth-based detection could contain signatures of bipolar oscillations that occurred within a supernova envelope. To that end, we, in this study, continue examining a cost-function formulation of statistical data assimilation (SDA) to infer solutions to a small-scale model of neutrino flavor transformation. SDA is an inference paradigm designed to optimize a model with sparse data. Our model consists of two monoenergetic neutrino beams with different energies emanating from a source and coherently interacting with each other and with a matter background, with radially varying interaction strengths. We attempt to infer flavor transformation histories of these beams using simulated measurements of the flavor content at locations “in vacuum” (that is, far from the source), which could in principle correspond to Earth-based detectors. Within the scope of this small-scale model, we found that: (i) based on such measurements, the SDA procedure is able to infer whether bipolar oscillations had occurred within the protoneutron star envelope, and (ii) if the measurements sample the full amplitude of the neutrino oscillations in vacuum, then the amplitude of the prior bipolar oscillations is well predicted. This result intimates that the inference paradigm can well complement numerical integration codes, via its ability to infer flavor evolution at physically inaccessible locations.

79 ASTRONOMY AND ASTROPHYSICS↗

Dark Energy Survey Year 3 results: Measurement of the baryon acoustic oscillations with three-dimensional clustering

The three-dimensional correlation function offers an effective way to summarize the correlation of the large-scale structure even for imaging galaxy surveys. We have applied the projected three-dimensional correlation function, ξ p to measure the baryonic acoustic oscillations (BAO) scale on the first-three years Dark Energy Survey data. The sample consists of about 7 million galaxies in the redshift range 0.6< z p < 1.1 over a footprint of 4108 deg 2 . Our theory modeling includes the impact of realistic true redshift distributions beyond Gaussian photo-z approximation. ξ p is obtained by projecting the three-dimensional correlation to the transverse direction. To increase the signal-to-noise of the measurements, we have considered a Gaussian stacking window function in place of the commonly used top-hat. ξ p is sensitive to D M (z eff )/r s , the ratio between the comoving angular diameter distance and the sound horizon. Using the full sample, D M (z eff )/r s is constrained to be19.00 ± 0.67 (top-hat) and 19.15 ± 0.58 (Gaussian) at z eff = 0.835. The constraint is weaker than the angular correlation w constraint 18.84 ± 0.50), and we trace this to the fact that the BAO signals are heterogeneous across redshift. While ξ p responds to the heterogeneous signals by enlarging the error bar, w can still give a tight bound on D M s in this case. When a homogeneous BAO-signal subsample in the range 0.7 < z p <1.0 (z eff = 0.845) is considered, ξp yields 19.80 ± 0.67 (top-hat) and 19.84 ± 0.53 (Gaussian). The latter is mildly stronger than the w constraint (19.86 ± 0.55). We find that the ξ p results are more sensitive to photo-z because ξ p keeps the three-dimensional clustering information causing it to be more prone to photo-z noise. The Gaussian window gives more robust results than the top-hat as the former is designed to suppress the low signal modes. ξ p and the angular statistics such as w have their own pros and cons, and they serve an important crosscheck with each other.

79 ASTRONOMY AND ASTROPHYSICS↗