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At least 667 records · Page 37

Monitoring and data quality assessment of the ATLAS liquid argon calorimeter

The liquid argon calorimeter is a key component of the ATLAS detector installed at the CERN Large Hadron Collider. The primary purpose of this calorimeter is the measurement of electron and photon kinematic properties. It also provides a crucial input for measuring jets and missing transverse momentum. An advanced data monitoring procedure was designed to quickly identify issues that would affect detector performance and ensure that only the best quality data are used for physics analysis. This article presents the validation procedure developed during the 2011 and 2012 LHC data-taking periods, in which more than 98% of the proton-proton luminosity recorded by ATLAS at a centre-of-mass energy of 7-8 TeV had calorimeter data quality suitable for physics analysis.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Circumventing data imbalance in magnetic ground state data for magnetic moment predictions

Abstract Magnetic materials play a crucial role in the transition to more sustainable forms of energy and electric vehicles. There is an anticipated shortage in magnetic materials in the future, and as a result there is an urgent need to discover and design new magnetic materials. Computational magnetic material design using density functional theory is daunting because of the challenge in identifying magnetic ground states from a combinatorially large set of possibilities. Machine learning offers a path forward by enabling efficient surrogate models that can more readily enumerate these states, but there is a dearth of training data available, and what is available tends to be imbalanced with too much non-magnetic data. In this work we show that the discrete and previously tackled data imbalance that exists at the level of the magnetic ordering leads to an imbalanced continuous distribution with many zeros when the data is unraveled at the atomic magnetic moment level, which subsequently leads to models with low accuracy for magnetic properties. We mitigate this by using a two-part model framework. Our scheme is able to classify atoms into magnetic and non-magnetic with an F1 score and Matthew’s correlation coefficient (MCC) of ~91% and then to provide an implicit embedding representation that maps directly onto the magnitude of the magnetic moment with a mean absolute error of 0.1 μ B . Beyond screening for new magnetic materials, we demonstrate an additional practical use case of our scheme: the provision of good initial guesses for magnetic moments in first-principles electronic relaxations. Such initialization is shown to lead to faster convergence to configurations that lie closer to the ground state.

Computer Science↗

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association

Abstract Motivation Drift tube ion mobility spectrometry coupled with mass spectrometry (DTIMS-MS) is increasingly implemented in high throughput omics workflows, and new informatics approaches are necessary for processing the associated data. To automatically extract arrival times for molecules measured by DTIMS at multiple electric fields and compute their associated collisional cross sections (CCS), we created the PNNL Ion Mobility Cross Section Extractor (PIXiE). The primary application presented for this algorithm is the extraction of data that can then be used to create a reference library of experimental CCS values for use in high throughput omics analyses. Results We demonstrate the utility of this approach by automatically extracting arrival times and calculating the associated CCSs for a set of endogenous metabolites and xenobiotics. The PIXiE-generated CCS values were within error of those calculated using commercially available instrument vendor software. Availability and implementation PIXiE is an open-source tool, freely available on Github. The documentation, source code of the software, and a GUI can be found at https://github.com/PNNL-Comp-Mass-Spec/PIXiE and the source code of the backend workflow library used by PIXiE can be found at https://github.com/PNNL-Comp-Mass-Spec/IMS-Informed-Library. Supplementary information Supplementary data are available at Bioinformatics online.

Ma, Jian↗

Constraints on dark energy dynamics and spatial curvature from Hubble parameter and baryon acoustic oscillation data

We use all available baryon acoustic oscillation distance measurements and Hubble parameter data to constrain the cosmological constant Λ, dynamical dark energy, and spatial curvature in simple cosmological models. Here, we find that the consensus spatially flat ΛCDM (Λ cold dark matter) model provides a reasonable fit to the data, but depending on the Hubble constant prior and cosmological model, it can be a little more than 1σ away from the best-fitting model, which can favour mild dark energy dynamics or non-flat spatial hypersurfaces.

79 ASTRONOMY AND ASTROPHYSICS↗

Weak Lensing Analysis of SPT selected Galaxy Clusters using Dark Energy Survey Science Verification Data

We present weak-lensing (WL) mass constraints for a sample of massive galaxy clusters detected by the South Pole Telescope (SPT) via the Sunyaev-Zel'dovich effect (SZE). We use griz imaging data obtained from the Science Verification (SV) phase of the Dark Energy Survey (DES) to fit the WL shear signal of 33 clusters in the redshift range 0.25 <= z <= 0.8 with NFW profiles and to constrain a four-parameter SPT mass-observable relation. To account for biases in WL masses, we introduce a WL mass to true mass scaling relation described by a mean bias and an intrinsic, lognormal scatter. We allow for correlated scatter within the WL and SZE mass-observable relations and use simulations to constrain priors on nuisance parameters related to bias and scatter from WL. We constrain the normalization of the zeta-M-500 relation, A(SZ) = 12.0(-6.7)(+2.6) when using a prior on the mass slope B-SZ from the latest SPT cluster cosmology analysis. Without this prior, we recover A(SZ) = 10.8(-5.2)(+2.3) and B-SZ = 1.30(-0.44)(+0.22). Results in both cases imply lower cluster masses than measured in previous work with and without WL, although the uncertainties are large. The WL derived value of B-SZ is approximate to 20 per cent lower than the value preferred by the most recent SPT cluster cosmology analysis. The method demonstrated in this work is designed to constrain cluster masses and cosmological parameters simultaneously and will form the basis for subsequent studies that employ the full SPT cluster sample together with the DES data.

cosmology: observations↗

Polarized Structure Function {sigma}LT from {pi}0 p Electroproduction Data in the Resonance Region at 0.4 GeV2 < Q2 < 1.0 GeV2

The first results on the sigma(LT') structure function in exclusive pi(0)p electroproduction at invariant masses of the final state of 1.5 GeV < W < 1.8 GeV and in the range of photon virtualities 0.4 GeV2 < Q(2) < 1.0 GeV2 were obtained from data on beam spin asymmetries and differential cross sections measured with the CLAS detector at Jefferson Lab. The Legendre moments determined from the sigma(LT') structure function have demonstrated sensitivity to the contributions from the nucleon resonances in the second and third resonance regions. These new data on the beam spin asymmetries in pi(0)p electroproduction extend the opportunities for the extraction of the nucleon resonance electro-excitation amplitudes in the mass range above 1.6 GeV.

Isupov, E. L.↗

Cross-correlation of Dark Energy Survey Year 3 lensing data with ACT and Planck thermal Sunyaev-Zel’dovich effect observations. I. Measurements, systematics tests, and feedback model constraints

Here we present a tomographic measurement of the cross-correlation between thermal Sunyaev-Zel’dovich (TSZ) maps from Planck and the Atacama Cosmology Telescope and weak galaxy lensing shears measured during the first three years of observations of the Dark Energy Survey. This correlation is sensitive to the thermal energy in baryons over a wide redshift range and is therefore a powerful probe of astrophysical feedback. We detect the correlation at a statistical significance of 21σ, the highest significance to date. We examine the TSZ maps for potential contaminants, including cosmic infrared background and radio sources, finding that cosmic infrared background has a substantial impact on our measurements and must be taken into account in our analysis. We use the cross-correlation measurements to test different feedback models. In particular, we model the TSZ using several different pressure profile models calibrated against hydrodynamical simulations. Our analysis marginalizes over redshift uncertainties, shear calibration biases, and intrinsic alignment effects. We also marginalize over Ω m and σ 8 using Planck or DES priors. We find that the data prefer the model with a low amplitude of the pressure profile at small scales, compatible with a scenario with strong active galactic nuclei feedback and ejection of gas from the inner part of the halos. When using a more flexible model for the shear profile, constraints are weaker, and the data cannot discriminate between different baryonic prescriptions.

79 ASTRONOMY AND ASTROPHYSICS↗

Inflationary features and shifts in cosmological parameters from Planck 2015 data

We explore the relationship between features in the Planck 2015 temperature and polarization data, shifts in the cosmological parameters, and features from inflation. Residuals in the temperature data at low multipole &ell;, which are responsible for the high H 0 ≈ 70 km s –1 Mpc –1 and low σ 8 $Ω^{1/2}_{m}$ values from &ell; < 1000 in power-law ΛCDM models, are better fit to inflationary features with a 1.9σ preference for running of the running of the tilt or a stronger 99% CL local significance preference for a sharp drop in power around k = 0.004 Mpc –1 in generalized slow roll and a lower H 0 ≈ 67km s –1 Mpc –1 . The same in-phase acoustic residuals at &ell; >1000 that drive the global H 0 constraints and appear as a lensing anomaly also favor running parameters which allow even lower H 0 , but not once lensing reconstruction is considered. Polarization spectra are intrinsically highly sensitive to these parameter shifts, and even more so in the Planck 2015 TE data due to an outlier at &ell; ≈ 165,which disfavors the best fit H 0 ΛCDM solution by more than 2σ, and high H 0 value at almost 3σ. Current polarization data also slightly enhance the significance of a sharp suppression of large-scale power but leave room for large improvements in the future with cosmic variance limited E-mode measurements.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

First Observation of C P Violation in B ¯ 0 → D C P ( * ) h 0 Decays by a Combined Time-Dependent Analysis of BABAR and Belle Data

We report a measurement of the time-dependent CP asymmetry of B¯ 0 → D$^{(*)}_{CP}$h 0 decays, where the light neutral hadron h 0 is a π 0 , η, or ω meson, and the neutral D meson is reconstructed in the CP eigenstates K + K – , K$^{0}_{S}$π 0 , or K$^{0}_{S}$ω. The measurement is performed combining the final data samples collected at the Υ(4S) resonance by the BABAR and Belle experiments at the asymmetric-energy B factories PEP-II at SLAC and KEKB at KEK, respectively. The data samples contain (471 ± 3) × 10 6 BB¯ pairs recorded by the BABAR detector and (772 ± 11) × 10 6 BB¯ pairs recorded by the Belle detector. We measure the CP asymmetry parameters –ηfS = +0.66 ± 0.10(stat) ± 0.06(syst) and C = –0.02 ± 0.07(stat) ± 0.03(syst). Here, these results correspond to the first observation of CP violation in B¯ 0 → D$^{(*)}_{CP}$h 0 decays. The hypothesis of no mixing-induced CP violation is excluded in these decays at the level of 5.4 standard deviations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

On the estimation of statistical uncertainties on powder diffraction and small-angle scattering data from two-dimensional X-ray detectors

Optimal methods are explored for obtaining one-dimensional powder pattern intensities from two-dimensional planar detectors with good estimates of their standard deviations. Methods are described to estimate uncertainties when the same image is measured in multiple frames as well as from a single frame. The importance of considering the correlation of diffraction points during the integration and the resampling process of data analysis is shown. It is found that correlations between adjacent pixels in the image can lead to seriously overestimated uncertainties if such correlations are neglected in the integration process. Off-diagonal entries in the variance–covariance (VC) matrix are problematic as virtually all data processing and modeling programs cannot handle the full VC matrix. It is shown that the off-diagonal terms come mainly from the pixel-splitting algorithm used as the default integration algorithm in many popular two-dimensional integration programs, as well as from rebinning and resampling steps later in the processing. When the full VC matrix can be propagated during the data reduction, it is possible to get accurate refined parameters and their uncertainties at the cost of increasing computational complexity. However, as this is not normally possible, the best approximate methods for data processing in order to estimate uncertainties on refined parameters with the greatest accuracy from just the diagonal variance terms in the VC matrix is explored.

Yang, X.↗

A priori checking of the light-response and data quality before extended data collection in pump–probe photocrystallography experiments

In picosecond and slower pump–probe diffraction experiments, collection of response–ratio correlation sets prior to full data collection provides an invaluable confirmation of the existence of a light-induced signal prior to full data collection. If a response to light exposure is observed, the quality of the data being collected can be assessed. We present a number of such correlation plots both for synchrotron and in-house pump–probe data collection.

Coppens, Philip↗

Transparent in Situ Data Transformations in ADIOS

Though an abundance of novel "data transformation" technologies have been developed (such as compression, level-of-detail, layout optimization, and indexing), there remains a notable gap in the adoption of such services by scientific applications. In response, we develop an in situ data transformation framework in the ADIOS I/O middleware with a "plug in" interface, thus greatly simplifying both the deployment and use of data transform services in scientific applications. Our approach ensures user-transparency, runtime-configurability, compatibility with existing I/O optimizations, and the potential for exploiting read-optimizing transforms (such as level-of-detail) to achieve I/O reduction. We demonstrate use of our framework with the QLG simulation at up to 8,192 cores on the leadership-class Titan supercomputer, showing negligible overhead. We also explore the read performance implications of data transforms with respect to parameters such as chunk size, access pattern, and the "opacity" of different transform methods including compression and level-of-detail.

Computer Science↗

ACDT: Architected Composite Data Types Trading-in Unfettered Data Access for Improved Execution

With Exascale performance and its challenges in mind, one ubiquitous concern among architects is energy efficiency. Petascale systems projected to Exascale systems are unsustainable at current power consumption rates. One major contributor to system-wide power consumption is the number of memory operations leading to data movement and management techniques applied by the runtime system. To address this problem, we present the concept of the Architected Composite Data Types (ACDT) framework. The framework is made aware of data composites, assigning them a specific layout, transformations and operators. Data manipulation overhead is amortized over a larger number of elements and program performance and power efficiency can be significantly improved. We developed the fundamentals of an ACDT framework on a massively multithreaded adaptive runtime system geared towards Exascale clusters. Showcasing the capability of ACDT, we exercised the framework with two representative processing kernels - Matrix Vector Multiply and the Cholesky Decomposition – applied to sparse matrices. As transformation modules, we applied optimized compress/decompress engines and configured invariant operators for maximum energy/performance efficiency. Additionally, we explored two different approaches based on transformation opaqueness in relation to the application. Under the first approach, the application is agnostic to compression and decompression activity. Such approach entails minimal changes to the original application code, but leaves out potential applicationspecific optimizations. The second approach exposes the decompression process to the application, hereby exposing optimization opportunities that can only be exploited with application knowledge. The experimental results show that the two approaches have their strengths in HW and SW respectively, where the SW approach can yield performance and power improvements that are an order of magnitude better than ACDT-oblivious, hand-optimized implementations.We consider the ACDT runtime framework an important component of compute nodes that will lead towards power efficient Exascale clusters.

exascale↗

Parallel State Estimation Assessment with Practical Data

This paper presents a full-cycle parallel state estimation (PSE) implementation using a preconditioned conjugate gradient algorithm. The developed code is able to solve large-size power system state estimation within 5 seconds using real-world data, comparable to the Supervisory Control And Data Acquisition (SCADA) rate. This achievement allows the operators to know the system status much faster to help improve grid reliability. Case study results of the Bonneville Power Administration (BPA) system with real measurements are presented. The benefits of fast state estimation are also discussed.

State Estimation, Preconditioned Conjugate Gradien↗

Data Management in the Continuum: Cross-facility Object-based Data Transfers

Scientific workflows are evolving from relying on a monolithic storage subsystem at a single High-Performance Computing (HPC) facility to using geographically distributed file systems, repositories, and cloud storage. As a result, storing, accessing, transferring, and managing scientific data have become highly complex and prone to performance inefficiencies. This paper delves into these challenges by exploring an optimized end-to-end interface designed to seamlessly connect various local and remote storage systems, enabling efficient data movement of objects across HPC–Cloud and HPC–HPC environments. We showcase this capability through an object-focused data management runtime system, discuss the effects of relaxed consistency semantics in distributed object scenarios, and illustrate its application in an earthquake simulation workflow. Besides reducing the amount of data by selectively transferring regions of interest, our facility-local results achieved a speedup of 45 × over an optimized HDF5 usage and 15 × over the HDF5 with caching by using the new interface in PDC-XF.

Bez, Jean Luca↗

Inverse problems-based maximum likelihood estimation of ground reflectivity for selected regions of interest from stripmap SAR data [Regularized maximum likelihood estimation of ground reflectivity from stripmap SAR data]

In this study, we derive a comprehensive forward model for the data collected by stripmap synthetic aperture radar (SAR) that is linear in the ground reflectivity parameters. It is also shown that if the noise model is additive, then the forward model fits into the linear statistical model framework, and the ground reflectivity parameters can be estimated by statistical methods. We derive the maximum likelihood (ML) estimates for the ground reflectivity parameters in the case of additive white Gaussian noise. Furthermore, we show that obtaining the ML estimates of the ground reflectivity requires two steps. The first step amounts to a cross-correlation of the data with a model of the data acquisition parameters, and it is shown that this step has essentially the same processing as the so-called convolution back-projection algorithm. The second step is a complete system inversion that is capable of mitigating the sidelobes of the spatially variant impulse responses remaining after the correlation processing. We also state the Cramer-Rao lower bound (CRLB) for the ML ground reflectivity estimates.We show that the CRLB is linked to the SAR system parameters, the flight path of the SAR sensor, and the image reconstruction grid.We demonstrate the ML image formation and the CRLB bound for synthetically generated data.

47 OTHER INSTRUMENTATION↗