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All sourcesNASA NTRSDOE OSTI
NASA NTRSDate not supplied

Impact of Pacific Ocean Heatwaves on Phytoplankton Community Composition

Since 2013, marine heatwaves have become recurrent throughout the equatorial and northeastern Pacific Ocean and are expected to increase in intensity relative to historic norms. Among the ecological ramifications associated with these high temperature anoma- lies are increased mortality of higher trophic organisms such as marine mammals and sea- birds, which are likely triggered by changes in the composition of phytoplankton, the base of the marine trophic food web. Here, we assimilated satellite ocean color data into an ocean biogeochemical model to describe changes in the abundance of phytoplankton functional types (PFTs) during the last decade’s (2010s) warm anomalies in the equatorial and northeastern Pacific Ocean. We find important changes associated with the “Blob” warm anomaly in the Gulf of Alaska, where reduced silica supply led to a switch in community composition from diatoms to dinoflagellates, resulting in an increase in surface ocean chlorophyll during the Summer–Fall of 2014. A more dramatic change was observed in the equatorial Pacific, where the extreme warm conditions of the 2016 El Niño resulted in a major decline of about 40% in surface chlorophyll, which was associated with a nearly total collapse in diatoms.

Lionel A. Arteaga↗
NASA NTRS2024

Jefferson County Ecological Conservation: Quantifying the Effects of Hydrologic Restoration in the Camas National Wildlife Refuge and Mud Lake Wildlife Management Area

Wetlands in the Camas National Wildlife Refuge and Mud Lake Wildlife Management Area, a rare landscape feature in the Intermountain West, are crucial for migratory birds along the Pacific Flyway, yet these wetlands have experienced a noticeable decline in extent and inundation over the last 40+ years. Partners at the U.S. Fish and Wildlife Service and Idaho Department of Fish and Game have ongoing restoration efforts that are yet to be quantified. To assist these partners, we used NASA Earth observations to quantify change in wetland extent and determine if the restoration projects met the intended impact. The QA_PIXEL band from Landsat 5 Thematic Mapper (TM) and Landsat 8 Operational Land Imager (OLI) was used to identify water. Landsat 8 OLI imagery was also used for classifying landcover in ArcGIS Pro for 2016 and 2020 and to forecast landcover in 2060 using TerrSet’s Land Change Modeler. We also compared lidar data from 2011 and 2019 to detect changes in vegetation height, ground elevation, and surface water levels, and Sentinel-2 Multispectral Instrument (MSI) imagery to detect changes in vegetation health. Classification results indicated overall accuracies over 84% and Kappa indices above 0.80, well surpassing random classification performance. From 2016 to 2020 our classifications showed an 825 acre increase in wetland extent, and our forecasted 2060 model showed a 2795 acre decrease. Combining our partners’ knowledge of the area with our analyses, we created a remote sensing workflow to enhance future monitoring and decision-making. This study demonstrated the feasibility of NASA Earth observations in quantifying wetlands, informing restoration projects, and supporting avian conservation.

Cassidy Bromka↗
NASA NTRS2024

Platte River Water Resources: Assessing Urban Flood Vulnerability to Select Restoration Sites for Urban Woods and Prairies in the Great Plains

In the Platte River Basin, wetlands provide ecosystem services such as flood mitigation and wildlife habitat. However, increasing urban development in the area has impacted natural floodplain processes, leading to a decline in wildlife habitat and an elevated flood risk for nearby communities. To address this issue, Audubon Great Plains’ Urban Woods and Prairies (UWP) Initiative focuses on restoring vital habitats within urban areas to protect bird species and reduce flood hazards. Our project used remotely sensed data, including Landsat 8 Operational Land Imagery (OLI), Sentinel-2 Multispectral Instrument (MSI), and Sentinel-1 Synthetic Aperture Radar (SAR), to assess land use and land cover from 2013 to 2023, as well as flood extent. Broad-scale analysis of the LULC showed some changes in land use patterns across the Central Platte River Basin, with the most notable being a decrease in Agricultural land coverage and an increase in Vegetation and Grassland coverage. Land use changes varied across 13 focal cities across the entire basin. In particular, developed land in Grand Island, NE, nearly tripled from 2019 to 2023, making it a good possible candidate for restoration efforts. We overlaid a flood extent map with the LULC classifications in Grand Island to identify possible restoration sites under UWP. This data will inform Audubon Great Plains in identifying potential restoration sites in key cities.

Jennifer Mathis↗
NASA NTRSDate not supplied

X-57 Flight Systems Integration Path

The foundation for a safe and successful flight test of the National Aeronautics and Space Administration (NASA) X-57 Maxwell all-electric experimental airplane, or any X-Plane, is comprehensive system testing on the ground. This test campaign includes verification and validation (V&V) that the integrated system operates as designed and expected, as well as understanding how the system reacts and responds to failures that can occur during flight by performing failure modes and effects testing (FMET). The aircraft should be in the final flight configuration for these test activities because any modifications, even those that appear insignificant, could affect test outcomes. Although the plan was to perform V&V and FMET testing once the airplane was in the flight configuration, due to multiple component redesigns, concurrent software development, and other problems with on-aircraft testing, the X-57 Maxwell never made it into a full-flight configuration. As a result, a build-up approach was followed to test software and hardware as they became ready in order to continue making progress wherever possible. Using this approach revealed problems with the hardware and software faster than waiting for a full-flight configuration, allowing solutions to be found more quickly and in parallel with other project tasks. Other than unloaded motor testing in a lab setting, the only other test setup was on the airplane itself. On-aircraft testing was preferrable in order to test things as close to a flight configuration as possible but was time consuming due to the requirements for testing on the airplane. To overcome some of the on-aircraft barriers, off-aircraft test configurations, such as the Systems Integration Laboratory (SIL) and hardware-in-the-loop (HIL) setups, were used, but each of these setups had limitations to be considered. As a result, solutions found in the SIL or HIL configurations did not always work as expected on the airplane, resulting in an iterative process between on- and off-aircraft testing to find the final solution. Having a dedicated test platform such as an iron bird that closely represents the aircraft - without flight hardware - would have been the most effective off-aircraft test setup, which could have allowed the project to save time and money and potentially reach flight. This paper will highlight the V&V and FMET considerations and testing prerequisites, the build-up approaches to both software and system testing, the benefits and drawbacks to different test configurations, as well as battery testing and operations.

Kassidy M. Mclaughlin↗
NASA NTRS2024

Effective Visualization of Radar Data for Users Impacted By Color Vision Deficiency

Color Vision Deficiency (CVD) is a decreased ability to discern between particular colors. Eight percent of genetic males and half a percent of genetic females have some form of CVD, with many in the radar community falling into this group. When presenting data on a two-dimensional plane, it is common to use colors to represent values via a colormap. Colormap choice in the radar community is influenced by the ability to highlight scientifically interesting features in data, institutional choices, and domain dominance of legacy colormaps. The problem with these current colormaps is that many do not project well for those with CVD (i.e., green next to red). In working with the CVD community to address this problem, multiple colormaps for moments such as equivalent reflectivity factor and Doppler velocity were created for users with forms of CVD such as deuteranomaly, protanomaly, protanopia, and deuteranopia using Python tools such as colorspacious and viscm. We show how these colormaps can improve interpretability for four cases: a mesoscale convective system, a pyrocumulonimbus storm, a wintertime mid-latitude cyclone, and widespread storms with a large bird migration. These new radar equivalent reflectivity factor, Doppler velocity, and polarization colormaps are designed to highlight rain, frozen precipitation, non-meteorological targets, velocity-based items, be perceptually uniform, and visually friendly for those with CVD.

Zachary Sherman↗
NASA NTRSDate not supplied

X-57 Flight Systems Integration Path

The foundation for a safe and successful flight test of the National Aeronautics and Space Administration (NASA) X-57 Maxwell all-electric experimental airplane, or any X-Plane, is comprehensive system testing on the ground. This test campaign includes verification and validation (V&V) that the integrated system operates as designed and expected, as well as understanding how the system reacts and responds to failures that can occur during flight by performing failure modes and effects testing (FMET). The aircraft should be in the final flight configuration for these test activities because any modifications, even those that appear insignificant, could affect test outcomes. Although the plan was to perform V&V and FMET testing once the airplane was in the flight configuration, due to multiple component redesigns, concurrent software development, and other problems with on-aircraft testing, the X-57 Maxwell never made it into a full-flight configuration. As a result, a build-up approach was followed to test software and hardware as they became ready in order to continue making progress wherever possible. Using this approach revealed problems with the hardware and software faster than waiting for a full-flight configuration, allowing solutions to be found more quickly and in parallel with other project tasks. Other than unloaded motor testing in a lab setting, the only other test setup was on the airplane itself. On-aircraft testing was preferrable in order to test things as close to a flight configuration as possible but was time consuming due to the requirements for testing on the airplane. To overcome some of the on-aircraft barriers, off-aircraft test configurations, such as the Systems Integration Laboratory (SIL) and hardware-in-the-loop (HIL) setups, were used, but each of these setups had limitations to be considered. As a result, solutions found in the SIL or HIL configurations did not always work as expected on the airplane, resulting in an iterative process between on- and off-aircraft testing to find the final solution. Having a dedicated test platform such as an iron bird that closely represents the aircraft - without flight hardware - would have been the most effective off-aircraft test setup, which could have allowed the project to save time and money and potentially reach flight. This paper will highlight the V&V and FMET considerations and testing prerequisites, the build-up approaches to both software and system testing, the benefits and drawbacks to different test configurations, as well as battery testing and operations.

Kassidy McLaughlin↗
NASA NTRS2025

Distributed Sensing Node Configuration

A vision and radar sensor integration strategy for surveillance of Advance Air Mobility Mission concept of airspace is contained in the CAD drawing in this publication developed as part of NASA's Transformational Tools and Technology project. High-density airspace operations with multiple aircraft type and potentially noncooperative aircraft require distributed sensor detection and tracking systems to monitor airspace for safe, autonomous flight operations for advanced air mobility, urban air mobility, and high density small uncrewed air systems (SUAS) flight concepts. Contained herein are drawings that are available in the stp and creo file formats of the distributed sensing nodes. Additional dovetail integration is included to enable rapid changing of embedded system. A day in the life node deployment is included in the 2023_last_flight_day.mp4. Please cite this publication if you use these drawings. This sensor configuration methodology is presented in detail in the publication reference below. Chester Dolph, Thomas Lombaerts, Corey A. Ippolito, Vahram Stepanyan, Evan Kawamura, Keerthana Kannan, George Szatkowski, Todd Ferante, Christopher Morris, Federica Vitiello, Flavia Causa, Roberto Opromolla and Giancarmine Fasano. "Distributed Sensor Fusion of Ground and Air Nodes using Vision and Radar Modalities for Tracking Multirotor Small Uncrewed Air Systems and Birds," AIAA 2024-1781. AIAA SCITECH 2024 Forum. January 2024.

Chester V Dolph↗
DOE OSTI2020

Mesoscale Modeling to Characterize Eagle Soaring Habitat

Uncovering drivers of risk is crucial to understanding interactions between wildlife and wind turbines, and identifying options for impact minimization. These drivers tie to co-variates linked to behavior and movement patterns that allow us to estimate locations and periods of risk. For volant species, atmospheric flow can have significant influence on flight patterns. For obligate soaring birds, like golden eagles, updraft velocities can inform where eagles are likely to travel, at what altitude, and where conditions are not likely sufficient to sustain soaring flight. This has been an active area of study in recent years, using relatively coarse atmospheric data generally at the 20km x 20km scale or larger. Leveraging a 20-year dataset from the Weather Research and Forecasting Model (WRF) (https://www.mmm.ucar.edu/weather-research-and-forecasting-model), we are quantifying vertical velocities across the continental United States at a 2km x 2km resolution. Wind resource data sets originally were static maps showing the mean annual wind speed over an area. However, for these data sets to be optimally used for various applications they must be high-resolution time series, seamlessly span large geographic contexts, and account for uncertainty in wind speed. The National Renewable Energy Laboratory is producing public available datasets that meet these criteria and will be bias corrected to yield the most accurate wind resource data. This effort is an augment to the current WIND Toolkit which houses a high resolution data set. In the new iteration of the WIND Toolkit, a 20-year dataset will be used to improve the accuracy and estimate uncertainty using ensemble and machine-learning techniques. The resulting product will be the most accurate dataset of its size and at a 2km x 2km spatial and 5-minute temporal resolution. Through this work, a mesoscale vertical velocity layer will be produced by calculating the likelihood of orographic updraft and thermal updraft conditions across the continental United States. Specifically, we will use WRF model output combined with digital elevation maps to predict updrafts and then determine if vertical velocities are sufficient to support Golden Eagle soaring and gliding. Ultimately this data layer will be made available as a GIS layer in the Wind Prospector (maps.nrel.gov/wind-prospector/) tool or a similar framework. Data that will be incorporated include wind speed, direction temperature, relative humidity, barometric pressure, air density, precipitation rate, solar radiation, atmospheric stability, skin temperature, and upward heat flux. These products will advance research on interactions between volant species and wind energy by providing open access to highly resolved data with uncertainty quantification not previously available at this scale.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2021

Methods and compositions for identification of source of microbial contamination in a sample

Herein are described 1058 different bacterial taxa that were unique to either human, grazing mammal, or bird fecal wastes. These identified taxa can serve as specific identifier taxa for these sources in environmental waters. Two field tests in marine waters demonstrate the capacity of phylogenetic microarray analysis to track multiple sources with one test.

Andersen, Gary L.↗
DOE OSTI2022

Interacting with the COVID virus model in VR environment

The Disaster Response Complex at Idaho State University (ISU) hosts an annual Disaster Preparedness and Response Conference which will give a bird's eye view of disasters and pandemics in the U.S. We'll demonstrate virtual reality (VR) and augmented reality (AR) capabilities at the conference. This VR demo displays the structure and components of the COVID virus model, and let users to interact with it in an immersive environment. The 3D model used in this demo is open source and downloaded from this site: https://sketchfab.com/GLS.

3D↗
DOE OSTI2021

The Role of Quantum Science Concepts in Enhancing Sensing and Imaging Technologies: Applications for Biology: Proceedings of a Workshop

Quantum concepts hold the potential to enable significant advances in sensing and imaging technologies that could be vital to the study of biological systems. The workshop Quantum Science Concepts in Enhancing Sensing and Imaging Technologies: Applications for Biology, held online March 8–10, 2021, was organized to examine the research and development needs to advance biological applications of quantum technology. Hosted by the National Academies of Sciences, Engineering, and Medicine, the event brought together experts working on state-of-the-art, quantum-enabled technologies and scientists who are interested in applying these technologies to biological systems. Through talks, panels, and discussions, the workshop facilitated a better understanding of the current and future biological applications of quantum-enabled technologies in fields such as microbiology, molecular biology, cell biology, plant science, mycology, and many others. The workshop was organized around three main themes. The first, quantum in biology, examined quantum concepts that are hypothesized to be important for life processes and that researchers are working to observe through biological imaging and sensing. The second, quantum for biology, addressed ways to use quantum concepts to enhance technologies for biological imaging and sensing. The third, biology for quantum, offered a wider discussion of how the frontiers of biological imaging and sensing could enable future study using quantum concepts, tools, or technologies. Throughout the workshop, participants identified a wide range of emerging approaches and opportunities at the intersection of quantum physics and biological sensing and imaging. During the workshop, there were some differences in how each speaker defined the term quantum. During one of the panels, Prem Kumar offered thoughts on what phenomena are classical versus quantum, explaining that techniques get progressively more quantum as you move from just having superposition to having superposition with measurement and entanglement. Another explanation from Clarice Aiello delineates the definition into several levels. This includes a base level of “quantum-ness,” which reflects that all matter is made of atoms, and when these particles are isolated they behave based on quantum mechanical principles. A second level is related to quantum coherence, where a single quantum object might be found in a coherent superposition state. A final level, which she described as the quantum-entangled level, involves multiple quantum systems which are entangled among themselves. Overall, the workshop touched on concepts such as superposition, entanglement, and squeezing and their potential implications for communication, computing, and simulation, in addition to the workshop’s main focal area, biological sensing and imaging. At the opening of the workshop, Thorsten Ritz of the University of California, Irvine, identified two questions at the heart of quantum biology: Is the machinery of life quantum mechanical, and can quantum mechanics be used to study the machinery of life in new ways? Participants highlighted systems in which researchers have explored these questions, from the vast array of molecular interactions involved in biological processes such as photosynthesis, to the mechanics involved in cellular functions such as differentiation and aggregation, to the role of oscillating magnetic fields in flight orientation among birds. Sensing and imaging technologies are crucial to biological research; these technologies could both enhance the study of quantum effects and be enhanced by quantum concepts. A critical challenge in biological research is to develop imaging and sensing tools that do not damage or interfere with the often fragile and fleeting systems being studied. Attendees discussed a variety of established and emerging technologies that could enhance noninvasive biological imaging, including single- and two-photon spectroscopy, single-molecule spectroscopy, quantum illumination, ghost imaging, and cryo-electron microscopy. One example came from Marlan Scully who gave a keynote address on the first day of the workshop. Scully emphasized the use of different laser technologies, which exhibit coherence and other quantum properties, in moving toward real-world biological applications, such as the detection of SARS-CoV-2. Both tools and theory will play an important role in advancing quantum biology research and applications. Several participants suggested theorists and experimentalists should work in tandem to understand and model biological processes. While physics often reduces systems to their simplest forms for fundamental insights, participants also noted the value of observing and understanding biological systems in all their “messiness,” capturing both the inner workings of biological systems and the complex interactions that occur within and between organisms. In discussions among participants, several attendees stressed the need to match emerging tools with the right scientific questions. Rather than developing quantum technologies as “a hammer looking for a nail,” participants emphasized a focus on exploring the problems these technologies are best suited to address. For example, it is important to consider the size of the phenomenon being studied, the timescales that are important in answering the scientific question, and other relevant considerations. Every tool along the spectrum from classical to quantum involves its own set of trade-offs. For example, Ted Laurence of the Lawrence Livermore National Laboratory said that quantum measurements, such as single photon counting, fluorescence transitions, and lasers, can take longer to produce the same results as classical measurements. These quantum measurements, however, do not require calibration and can enable new research questions to be answered. Prem Kumar, Northwestern University, noted that, despite their promise, quantum approaches should not be used simply for the sake of using quantum, especially in situations where classical approaches better meet the needs of the researcher. Understanding and applying quantum concepts could enable advances in a wide range of application areas including energy, synthetic biology, medicine, and sustainability. For example, Michelle O’Malley, University of California, Santa Barbara, described how improved noninvasive imaging approaches could help capture the complex interactions and functions involved in the breakdown of organic matter by microbial communities and lead to new technologies for capturing valuable products from plant waste. Several other participants discussed needs in tracking the movement of metabolites and molecules in microbial communities for insights into nutrient cycling in environments such as soil. Margaret Ahmad, Sorbonne University, discussed potential opportunities to leverage the magnetic properties of cryptochromes to advance new treatment approaches for diseases such as COVID-19 and cancer. Looking toward the future development of the field, participants discussed challenges to advancing quantum biology that arise from disciplinary disconnects between physicists and biologists. The siloing of academic research disciplines represents a significant barrier to progress. Disconnects in terminology, motivations and priorities, and structural barriers to collaborative work underscore the need for concerted efforts to bridge these divides. Attendees and speakers offered suggestions for resolving these divergences, establishing a shared language, moving the field forward, and fostering meaningful feedback between disciplines. Overall, participants stressed a need for balance, open communication, collaboration, unity, and clear dialogue on trade-offs between quantum and classical approaches. Keiko Torii, The University of Texas at Austin, said that the best collaborations happen when the project provides mutual advantages that can show off everyone’s talents, each team finds the work interesting, and partners develop a camaraderie to pursue new knowledge. To enable near- and long-term opportunities in this space, participants suggested that exploratory, high-risk funding could improve existing instrumentation to explore quantum enhancement collaboratively. They also emphasized the need for collaboration between quantum physicists and sensing/imaging scientists, which could be advanced through a dedicated quantum biology investigator program. People, even more than technology, will be crucial to the future of quantum biology. Participants explored training, education, and workforce needs to further develop this burgeoning field and cultivate the next generation of scientists. While many programs are still in their nascent stages, participants highlighted examples of approaches and programs being developed at various types of institutions to engage students and professional scientists in quantum biology research. Several participants stressed the need for an inclusive approach, spanning disciplines as well as communities to foster a diverse field fueled by the intellectual contributions of a wide range of people, including historically under-resourced schools and students. To increase awareness and excitement about quantum physics and related areas of biology, attendees suggested capitalizing on the “buzz” around quantum. Several participants emphasized the need to start early, introducing students to quantum concepts and their appealing “weirdness” in K–12 education. Engaging students early—before they become entrenched in traditional disciplinary siloes as typically happens in graduate school—could help to galvanize interest in the area and foster a generation of scientists with the interdisciplinary mindset and skills needed to advance this interdisciplinary field. While these efforts could be advanced at many levels and across multiple sectors, several participants suggested a national quantum biology center could be a valuable hub to coordinate and support quantum biology education and workforce development across academia, industry, and government.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2022

Apparatus and amendment of wind turbine blade impact detection and analysis

A multisensory system provides both temporal and spatial coverage capacities for auto-detection of bird collision events. The system includes an apparatus having a first circuitry to capture and store a series of images or video of a blade of a wind turbine; and a memory to store the images from the first circuitry. The apparatus also has one or more sensors to continuously sense vibration of the blade or for acoustic recordings; and a second circuitry to analyze the sensor data stream and/or the series of images or video to identify a cause of the vibration and to trigger the camera(s). A communication interface transmits data from the second circuitry to another device, wherein the second circuitry applies artificial intelligence or machine learning to control sensitivity of the one or more sensors.

Johnston, Matthew↗
DOE OSTI2020

Amphiphilic Block Copolymers for Flocculation and Hydrophobization of Legacy Waste Suspensions in Flotation Driven Dewatering Operations

There exists a degrading legacy fuel pond at the Sellafield site (UK), known as the First-Generation Magnox Storage Pond (FGMSP). After being placed into a passive care and maintenance regime resulting in a long storage period, the fuel rods, primarily their cladding, corroded in the pond forming magnesium hydroxide based sludges and suspended material. These ponds are a grave concern to the British government in terms of hazard and risk reduction. Therefore, decommissioning of these ponds is a top priority beginning with the contaminant retrievals process [1]. The pond has accumulated significant quantities of waste materials amongst the skips of fuel, including but not limited to: large inventories of corroded Magnox sludge, fuel rod fragments, metal fragments (from fuel skips), concrete degradation products (from the pond infrastructure), wind-blown sand, and other materials such as bird guano and animal remains. This challenge requires a chemically robust technology to complete sludge retrievals [2]. As nuclear is different, a more stringent process operation criteria is required. From the criteria, flotation was selected as a viable technology. Flotation involves the application of collector molecules which modify the hydrophobicity of suspended particles allowing them to adsorb to rising bubbles. As some particles lack inertia for flotation due to their size, dual flocculant/collector agents can be deployed for greater particle recovery, in this case, amphiphilic diblock copolymers. Two copolymers of Poly(acrylic acid)-b-poly(n-butyl acrylate) (or PAA-b-PnBA), of different hydrophobic chain lengths (PBA) were synthesized for flotation campaigns. Flotation has shown promise to be a valuable rapid dewatering strategy for decommissioning of legacy waste ponds whilst upholding the required operational criteria. This research has shown: PAA-b-PnBA copolymers promote flocculation of Mg(OH){sub 2} particulates. Diblock copolymers retain more fluid than traditional surfactant based collectors wrt. relative particulate recovery performance- where longer PnBA chain length polymers performed best. Performance appears to be hydrodynamically limited due to over-flocculation of Mg(OH){sub 2}. Potential to combine with sedimentation for high particle recovery with low fluid carryover.

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2024

VLM4Bio: A Benchmark Dataset to Evaluate Pretrained Vision-Language Models for Trait Discovery from Biological Images

Images are increasingly becoming the currency for documenting biodiversity on the planet, providing novel opportunities for accelerating scientific discoveries in the field of organismal biology, especially with the advent of large vision-language models (VLMs). We ask if pre-trained VLMs can aid scientists in answering a range of biologically relevant questions without any additional fine-tuning. In this paper, we evaluate the effectiveness of 12 state-of-the-art (SOTA) VLMs in the field of organismal biology using a novel dataset, VLM4Bio, consisting of 469K question8 answer pairs involving 30K images from three groups of organisms: fishes, birds, and butterflies, covering five biologically relevant tasks. We also explore the effects of applying prompting techniques and tests for reasoning hallucination on the performance of VLMs, shedding new light on the capabilities of current SOTA VLMs in answering biologically relevant questions using images

Maruf, M [Virginia Tech, Blacksburg]↗
DOE OSTI2022

BFSVBF (BatFinder Smart Video BioFilter) [SWR-22-87] and Multi-class BatFinder Smart Video BioFilter Keras

Bats are notoriously difficult to study, therefore, identifying specific behavioral trends and the precise environmental conditions at the time of collision requires a monitoring solution that can reliably collect relevant data. To date, thermal infrared video surveillance has been extensively applied to study bats and has proven to be a powerful yet cumbersome tool. Current analytical approaches are time consuming because data processing data has not been fully automated. In the past, steps have been taken to record avian and bat activity in conjunction with complicated image processing techniques that separate species from other moving objects within the field of view (i.e. clouds and portions of the wind turbine). Once the videos are collected, the post-processing does not allow real time monitoring and identification, leading to a delay in both studying the behavior of these species and determining the effectiveness of any impact reduction strategy being studied. Moreover, object identification capability is lacking, thus limiting the usefulness of video data. To resolve these issues, we are using open source computer vision and machine learning techniques allowing for automatic detection of objects in real-time with the ability to correlate these objects with environmental variables and recording the flight paths of each object. The code has gone through five rounds of development with images used to train the models. This advancement allows for automated real-time data collection, identification, and tracking, thereby eliminating the need for long and tedious post-analysis processing of the videos. We will discuss the two open source and publicly available machine learning models developed within this scope of this work: 1) a binary model with a 97.5% accuracy in identifying the difference between an object and an empty scene, including wind turbine and clouds; and 2) a multiple classification model with the capability of identifying the type of object detected: bats (90% accuracy), birds (83% accuracy), insects (69% accuracy) and non-biological (99% accuracy).

Yarbrough, John↗
DOE OSTI2021

Operando X-Ray Tomography Imaging of Solid-State Electrolyte Response to Li Evolution under Realistic Operating Conditions

Solid-state Li-ion conductors are a next-generation battery technology that are particularly promising for electric vehicles, offering the capacitive benefits of Li metal anodes with nonflammable electrolytes. Microstructural evolution in these solid-state batteries, especially the Li anode, requires deeper understanding of the conditions under which certain undesired behaviors are more likely to occur. This study utilizes operando X-ray computed tomography to visualize the behavior of lithium in response to device operation, considering variables that are relevant to a realistic battery: stack pressure, microscale defects such as pores, and temperature. This work demonstrates that experimental and operational conditions, especially temperature, affect the fundamental driving forces of realistic solid electrolyte systems and provides visual insight into possible mechanisms of Li migration. In particular, the effect of these variables on Li propagation from the anode through pre-existing defects and Li nucleation within the imperfectly electron-insulating electrolyte is highlighted.

battery↗
DOE OSTI2020

Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community

Abstract Interactive microbial communities are ubiquitous, influencing biogeochemical cycles and host health. One widespread interaction is nutrient exchange, or cross-feeding, wherein metabolites are transferred between microbes. Some cross-fed metabolites, such as vitamins, amino acids, and ammonium (NH4+), are communally valuable and impose a cost on the producer. The mechanisms that enforce cross-feeding of communally valuable metabolites are not fully understood. Previously we engineered a cross-feeding coculture between N2-fixing Rhodopseudomonas palustris and fermentative Escherichia coli. Engineered R. palustris excretes essential nitrogen as NH4+ to E. coli, while E. coli excretes essential carbon as fermentation products to R. palustris. Here, we sought to determine whether a reciprocal cross-feeding relationship would evolve spontaneously in cocultures with wild-type R. palustris, which is not known to excrete NH4+. Indeed, we observed the emergence of NH4+ cross-feeding, but driven by adaptation of E. coli alone. A missense mutation in E. coli NtrC, a regulator of nitrogen scavenging, resulted in constitutive activation of an NH4+ transporter. This activity likely allowed E. coli to subsist on the small amount of leaked NH4+ and better reciprocate through elevated excretion of fermentation products from a larger E. coli population. Our results indicate that enhanced nutrient uptake by recipients, rather than increased excretion by producers, is an underappreciated yet possibly prevalent mechanism by which cross-feeding can emerge.

Fritts, Ryan K.↗